Wall clock time and date at job start Tue Mar 31 2020 20:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.50929 * 2 1 4 4 C 1.53271 * 109.50795 * 239.90047 * 2 1 3 5 5 N 1.47165 * 108.55624 * 187.03422 * 4 2 1 6 6 C 1.34784 * 121.07583 * 231.25042 * 5 4 2 7 7 O 1.21627 * 120.00147 * 173.39174 * 6 5 4 8 8 C 1.47099 * 119.99677 * 353.39099 * 6 5 4 9 9 C 1.38386 * 127.99602 * 159.61018 * 8 6 5 10 10 C 1.37582 * 111.26320 * 179.97438 * 9 8 6 11 11 N 1.29555 * 117.94941 * 0.02562 * 10 9 8 12 12 S 1.56307 * 110.38072 * 359.69143 * 11 10 9 13 13 C 1.47334 * 117.85153 * 51.22790 * 5 4 2 14 14 C 1.52352 * 108.39816 * 310.80116 * 13 5 4 15 15 C 1.54374 * 110.38905 * 286.62709 * 14 13 5 16 16 C 1.54460 * 102.86694 * 207.58380 * 15 14 13 17 17 N 1.47088 * 107.30007 * 21.49568 * 16 15 14 18 18 C 1.36935 * 125.63114 * 180.97999 * 17 16 15 19 19 H 1.08000 * 119.99859 * 180.02562 * 18 17 16 20 20 C 1.38816 * 120.00022 * 0.02805 * 18 17 16 21 21 N 1.31624 * 119.99677 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00092 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46867 * 269.99923 * 22 20 18 24 24 H 1.48502 * 109.47056 * 29.99392 * 22 20 18 25 25 H 1.48493 * 109.47180 * 149.99942 * 22 20 18 26 26 C 1.47575 * 108.74188 * 1.24341 * 17 16 15 27 27 O 1.41890 * 111.44418 * 50.09674 * 14 13 5 28 28 H 1.08996 * 109.47350 * 180.09874 * 1 2 3 29 29 H 1.09001 * 109.46756 * 300.10098 * 1 2 3 30 30 H 1.08999 * 109.47018 * 60.09691 * 1 2 3 31 31 H 1.09002 * 109.62590 * 67.31635 * 4 2 1 32 32 H 1.09000 * 109.78121 * 306.84444 * 4 2 1 33 33 H 1.07999 * 124.37355 * 359.96425 * 9 8 6 34 34 H 1.07997 * 121.02549 * 179.97438 * 10 9 8 35 35 H 1.09007 * 109.67614 * 191.07592 * 13 5 4 36 36 H 1.08997 * 109.71042 * 70.55137 * 13 5 4 37 37 H 1.09004 * 110.73401 * 89.23454 * 15 14 13 38 38 H 1.09004 * 110.73408 * 325.92305 * 15 14 13 39 39 H 1.09005 * 109.88013 * 262.07376 * 16 15 14 40 40 H 1.08998 * 109.88239 * 140.92770 * 16 15 14 41 41 H 0.97002 * 119.99836 * 180.02562 * 21 20 18 42 42 H 1.09005 * 110.37148 * 95.25877 * 26 17 16 43 43 H 1.08994 * 110.37832 * 217.60900 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0419 -0.7245 -1.2499 5 7 3.5034 -0.8619 -1.1461 6 6 4.3119 -0.4729 -2.1520 7 8 5.5187 -0.4825 -2.0006 8 6 3.7347 -0.0369 -3.4328 9 6 4.3268 0.7389 -4.4139 10 6 3.4735 0.9389 -5.4745 11 7 2.2951 0.4039 -5.4150 12 16 2.1244 -0.3896 -4.0792 13 6 4.0544 -1.4377 0.0930 14 6 3.4228 -0.7199 1.2792 15 6 4.0033 0.7038 1.4175 16 6 3.8586 0.9890 2.9286 17 7 3.7532 -0.3098 3.6107 18 6 3.5927 -0.4924 4.9583 19 1 3.5259 -1.4912 5.3637 20 6 3.5158 0.6062 5.8033 21 7 3.5976 1.8234 5.3092 22 14 3.2976 0.3571 7.6417 23 1 1.8493 0.3179 7.9674 24 1 3.9307 -0.9239 8.0462 25 1 3.9392 1.4791 8.3729 26 6 3.8553 -1.3839 2.6038 27 8 2.0090 -0.6769 1.1666 28 1 -0.3634 -1.0276 0.0018 29 1 -0.3633 0.5154 0.8891 30 1 -0.3633 0.5123 -0.8908 31 1 1.7909 -0.1444 -2.1379 32 1 1.5853 -1.7120 -1.3168 33 1 5.3293 1.1363 -4.3547 34 1 3.7764 1.5246 -6.3298 35 1 5.1354 -1.2991 0.1132 36 1 3.8199 -2.5011 0.1402 37 1 3.4214 1.4163 0.8327 38 1 5.0517 0.7237 1.1197 39 1 2.9589 1.5771 3.1103 40 1 4.7348 1.5274 3.2898 41 1 3.5442 2.5912 5.8997 42 1 4.8824 -1.7423 2.5342 43 1 3.1824 -2.2039 2.8541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071174141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:10 Heat of formation + Delta-G solvation = 17.629077 kcal Electronic energy + Delta-G solvation = -28014.692923 eV Core-core repulsion = 24188.611941 eV Total energy + Delta-G solvation = -3826.080982 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.76732 -39.60233 -38.57201 -36.44446 -34.78789 -33.21627 -31.86721 -31.37649 -29.43227 -28.65964 -26.83385 -26.63105 -25.19206 -23.77904 -22.02862 -21.89515 -20.22475 -19.87152 -19.07789 -18.69162 -17.14768 -17.04455 -16.65366 -16.32323 -15.67179 -15.20313 -14.88671 -14.64983 -14.55769 -14.27551 -13.94288 -13.68006 -13.55906 -13.40633 -13.07219 -12.61001 -12.34686 -12.29748 -12.02167 -11.91926 -11.71558 -11.63843 -11.06140 -10.97396 -10.89262 -10.85771 -10.48710 -10.25059 -10.19523 -10.09993 -10.02056 -9.97110 -9.71613 -9.56607 -9.05496 -8.56570 -8.51313 -6.81092 -5.67935 -3.01233 -0.02401 0.89246 1.52894 1.90526 2.54437 2.85105 3.42744 3.47383 3.49409 3.77228 4.06549 4.48878 4.54704 4.62923 4.67253 4.74767 4.94477 5.00758 5.09129 5.22680 5.32793 5.41000 5.44137 5.48376 5.55399 5.56303 5.73194 5.75271 5.83302 5.93932 6.08510 6.14443 6.16355 6.22673 6.45148 6.47712 6.52066 6.61875 7.06485 7.56697 7.61222 7.64605 7.82083 7.85212 8.27434 9.24183 9.84214 10.49539 11.43915 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.024665 B = 0.003056 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.959838 B = 9159.949327 C = 9555.756551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 H 0.068 0.932 4 C 0.069 3.931 5 N -0.604 5.604 6 C 0.598 3.402 7 O -0.519 6.519 8 C -0.268 4.268 9 C -0.111 4.111 10 C 0.061 3.939 11 N -0.535 5.535 12 S 0.430 5.570 13 C 0.099 3.901 14 C 0.091 3.909 15 C -0.166 4.166 16 C 0.186 3.814 17 N -0.599 5.599 18 C -0.225 4.225 19 H 0.079 0.921 20 C -0.009 4.009 21 N -0.922 5.922 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.281 1.281 25 H -0.291 1.291 26 C 0.154 3.846 27 O -0.340 6.340 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.176 0.824 34 H 0.182 0.818 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.043 0.957 41 H 0.251 0.749 42 H 0.038 0.962 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.964 -3.806 -21.017 21.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.014 3.986 3 H 0.086 0.914 4 C -0.056 4.056 5 N -0.337 5.337 6 C 0.384 3.616 7 O -0.395 6.395 8 C -0.401 4.401 9 C -0.146 4.146 10 C -0.131 4.131 11 N -0.363 5.363 12 S 0.585 5.415 13 C -0.023 4.023 14 C 0.050 3.950 15 C -0.205 4.205 16 C 0.061 3.939 17 N -0.325 5.325 18 C -0.353 4.353 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.570 5.570 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.207 1.207 25 H -0.218 1.218 26 C 0.027 3.973 27 O -0.258 6.258 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.193 0.807 34 H 0.199 0.801 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.490 -4.487 -20.914 22.084 hybrid contribution 1.706 1.009 0.507 2.045 sum -3.785 -3.479 -20.408 21.045 Atomic orbital electron populations 1.21718 0.92082 1.03264 1.02990 1.22401 0.95579 0.96045 0.84588 0.91445 1.22912 0.80196 1.02647 0.99858 1.47999 1.06679 1.62205 1.16821 1.16733 0.85974 0.77391 0.81514 1.90836 1.13521 1.53727 1.81451 1.26867 1.02947 1.08935 1.01357 1.22145 1.02512 0.98368 0.91571 1.22267 0.88042 1.01809 1.01001 1.72161 1.23997 1.17472 1.22648 1.81935 1.11044 1.44669 1.03859 1.22273 1.00869 0.97474 0.81657 1.22471 0.81031 0.96628 0.94890 1.23383 1.00092 0.95585 1.01414 1.21102 1.00821 0.87842 0.84119 1.44420 1.85863 1.00016 1.02247 1.19042 1.42772 0.92907 0.80568 0.90358 1.24793 1.02255 0.95275 0.98137 1.69969 1.56844 0.96908 1.33258 0.86107 0.77670 0.76944 0.84966 1.21647 1.20699 1.21760 1.21379 0.97525 0.92607 0.85818 1.87939 1.20117 1.76454 1.41324 0.91467 0.90746 0.91176 0.89963 0.89331 0.80698 0.80109 0.87564 0.90286 0.92081 0.91499 0.93473 0.93931 0.93832 0.94435 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.57 37.16 0.36 -1.14 16 2 C 0.07 0.96 3.19 -26.59 -0.08 0.87 16 3 H 0.07 0.96 6.22 -51.93 -0.32 0.63 16 4 C 0.07 0.74 5.08 -3.54 -0.02 0.73 16 5 N -0.60 -7.90 2.95 -174.09 -0.51 -8.42 16 6 C 0.60 8.23 7.68 -12.66 -0.10 8.14 16 7 O -0.52 -8.74 16.50 5.25 0.09 -8.65 16 8 C -0.27 -2.95 6.24 -35.93 -0.22 -3.18 16 9 C -0.11 -1.03 10.46 -39.77 -0.42 -1.45 16 10 C 0.06 0.51 11.15 -18.75 -0.21 0.30 16 11 N -0.53 -5.32 11.29 21.63 0.24 -5.08 16 12 S 0.43 3.84 19.53 -107.50 -2.10 1.74 16 13 C 0.10 1.44 5.32 -3.92 -0.02 1.42 16 14 C 0.09 1.59 0.84 -89.52 -0.08 1.52 16 15 C -0.17 -3.21 5.86 -25.25 -0.15 -3.36 16 16 C 0.19 4.58 5.38 -2.96 -0.02 4.57 16 17 N -0.60 -15.34 3.40 -170.16 -0.58 -15.91 16 18 C -0.22 -6.27 10.28 -15.06 -0.15 -6.43 16 19 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 20 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 21 N -0.92 -27.27 10.31 55.49 0.57 -26.69 16 22 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 C 0.15 3.13 6.43 -2.74 -0.02 3.11 16 27 O -0.34 -5.89 9.94 -35.22 -0.35 -6.24 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.75 3.77 -23.97 -0.09 0.66 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.18 1.40 8.06 -52.49 -0.42 0.97 16 34 H 0.18 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.11 1.63 6.84 -51.93 -0.36 1.28 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 1.11 6.07 -51.93 -0.32 0.80 16 38 H 0.07 1.27 7.83 -51.93 -0.41 0.86 16 39 H 0.05 1.30 7.38 -51.93 -0.38 0.92 16 40 H 0.04 1.16 7.50 -51.93 -0.39 0.77 16 41 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.04 0.73 8.00 -51.93 -0.42 0.32 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 352.49 15.07 5.31 5.31 Total: -1.00 -33.73 352.49 -9.18 -42.91 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.61 Total: -0.93 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -1.22 Total: 4.77 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.28 Total: -56.10 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.26 Total: -14.89 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -2.10 Total: 1.74 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.73 -9.18 -42.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071174141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.537 kcal (2) G-P(sol) polarization free energy of solvation -33.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds