Wall clock time and date at job start Tue Mar 31 2020 20:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.50929 * 2 1 4 4 C 1.53271 * 109.50795 * 239.90047 * 2 1 3 5 5 N 1.47165 * 108.55624 * 187.03422 * 4 2 1 6 6 C 1.34784 * 121.07583 * 231.25042 * 5 4 2 7 7 O 1.21627 * 120.00147 * 173.39174 * 6 5 4 8 8 C 1.47099 * 119.99677 * 353.39099 * 6 5 4 9 9 C 1.38386 * 127.99602 * 159.61018 * 8 6 5 10 10 C 1.37582 * 111.26320 * 179.97438 * 9 8 6 11 11 N 1.29555 * 117.94941 * 0.02562 * 10 9 8 12 12 S 1.56307 * 110.38072 * 359.69143 * 11 10 9 13 13 C 1.47334 * 117.85153 * 51.22790 * 5 4 2 14 14 C 1.52352 * 108.39816 * 310.80116 * 13 5 4 15 15 C 1.54374 * 110.38905 * 286.62709 * 14 13 5 16 16 C 1.54460 * 102.86694 * 207.58380 * 15 14 13 17 17 N 1.47088 * 107.30007 * 21.49568 * 16 15 14 18 18 C 1.36935 * 125.63114 * 180.97999 * 17 16 15 19 19 H 1.08000 * 119.99859 * 180.02562 * 18 17 16 20 20 C 1.38816 * 120.00022 * 0.02805 * 18 17 16 21 21 N 1.31624 * 119.99677 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00092 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46867 * 269.99923 * 22 20 18 24 24 H 1.48502 * 109.47056 * 29.99392 * 22 20 18 25 25 H 1.48493 * 109.47180 * 149.99942 * 22 20 18 26 26 C 1.47575 * 108.74188 * 1.24341 * 17 16 15 27 27 O 1.41890 * 111.44418 * 50.09674 * 14 13 5 28 28 H 1.08996 * 109.47350 * 180.09874 * 1 2 3 29 29 H 1.09001 * 109.46756 * 300.10098 * 1 2 3 30 30 H 1.08999 * 109.47018 * 60.09691 * 1 2 3 31 31 H 1.09002 * 109.62590 * 67.31635 * 4 2 1 32 32 H 1.09000 * 109.78121 * 306.84444 * 4 2 1 33 33 H 1.07999 * 124.37355 * 359.96425 * 9 8 6 34 34 H 1.07997 * 121.02549 * 179.97438 * 10 9 8 35 35 H 1.09007 * 109.67614 * 191.07592 * 13 5 4 36 36 H 1.08997 * 109.71042 * 70.55137 * 13 5 4 37 37 H 1.09004 * 110.73401 * 89.23454 * 15 14 13 38 38 H 1.09004 * 110.73408 * 325.92305 * 15 14 13 39 39 H 1.09005 * 109.88013 * 262.07376 * 16 15 14 40 40 H 1.08998 * 109.88239 * 140.92770 * 16 15 14 41 41 H 0.97002 * 119.99836 * 180.02562 * 21 20 18 42 42 H 1.09005 * 110.37148 * 95.25877 * 26 17 16 43 43 H 1.08994 * 110.37832 * 217.60900 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0419 -0.7245 -1.2499 5 7 3.5034 -0.8619 -1.1461 6 6 4.3119 -0.4729 -2.1520 7 8 5.5187 -0.4825 -2.0006 8 6 3.7347 -0.0369 -3.4328 9 6 4.3268 0.7389 -4.4139 10 6 3.4735 0.9389 -5.4745 11 7 2.2951 0.4039 -5.4150 12 16 2.1244 -0.3896 -4.0792 13 6 4.0544 -1.4377 0.0930 14 6 3.4228 -0.7199 1.2792 15 6 4.0033 0.7038 1.4175 16 6 3.8586 0.9890 2.9286 17 7 3.7532 -0.3098 3.6107 18 6 3.5927 -0.4924 4.9583 19 1 3.5259 -1.4912 5.3637 20 6 3.5158 0.6062 5.8033 21 7 3.5976 1.8234 5.3092 22 14 3.2976 0.3571 7.6417 23 1 1.8493 0.3179 7.9674 24 1 3.9307 -0.9239 8.0462 25 1 3.9392 1.4791 8.3729 26 6 3.8553 -1.3839 2.6038 27 8 2.0090 -0.6769 1.1666 28 1 -0.3634 -1.0276 0.0018 29 1 -0.3633 0.5154 0.8891 30 1 -0.3633 0.5123 -0.8908 31 1 1.7909 -0.1444 -2.1379 32 1 1.5853 -1.7120 -1.3168 33 1 5.3293 1.1363 -4.3547 34 1 3.7764 1.5246 -6.3298 35 1 5.1354 -1.2991 0.1132 36 1 3.8199 -2.5011 0.1402 37 1 3.4214 1.4163 0.8327 38 1 5.0517 0.7237 1.1197 39 1 2.9589 1.5771 3.1103 40 1 4.7348 1.5274 3.2898 41 1 3.5442 2.5912 5.8997 42 1 4.8824 -1.7423 2.5342 43 1 3.1824 -2.2039 2.8541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071174141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:09 Heat of formation + Delta-G solvation = -5.661187 kcal Electronic energy + Delta-G solvation = -28015.702865 eV Core-core repulsion = 24188.611941 eV Total energy + Delta-G solvation = -3827.090924 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.93356 -40.49744 -39.64948 -37.99161 -35.96219 -34.82851 -33.07596 -32.58721 -31.11197 -30.13725 -27.98883 -27.69870 -26.57156 -25.30217 -23.24223 -22.80489 -22.04479 -20.96096 -20.18588 -19.60953 -18.95257 -18.11113 -17.73667 -17.42800 -16.81509 -16.65758 -16.13406 -16.02397 -15.70515 -15.48418 -15.27648 -15.13162 -14.64504 -14.42253 -14.24687 -14.02613 -13.77941 -13.58461 -13.24625 -13.11491 -13.01110 -12.80782 -12.76686 -12.49298 -12.28082 -12.07841 -12.00677 -11.85993 -11.82341 -11.60680 -11.56496 -11.14257 -10.95651 -10.81230 -10.69667 -9.74086 -9.64189 -8.90256 -7.83481 -5.19094 -0.79880 0.15720 0.83441 1.18710 1.46582 1.49162 1.55331 1.57833 1.90302 2.49902 2.57463 3.17431 3.35205 3.45348 3.52890 3.74141 3.83938 3.84830 3.95472 4.00203 4.05680 4.09470 4.34543 4.36223 4.45431 4.55904 4.63845 4.69812 4.74663 4.77847 4.84771 4.86777 4.95047 5.01899 5.07876 5.13925 5.32675 5.44542 5.48897 5.58510 5.71215 6.05931 6.18014 6.34858 6.79480 7.09666 7.76543 8.41247 9.27429 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.024665 B = 0.003056 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.959838 B = 9159.949327 C = 9555.756551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.065 3.935 3 H 0.051 0.949 4 C 0.074 3.926 5 N -0.605 5.605 6 C 0.598 3.402 7 O -0.558 6.558 8 C -0.299 4.299 9 C -0.104 4.104 10 C 0.066 3.934 11 N -0.553 5.553 12 S 0.467 5.533 13 C 0.108 3.892 14 C 0.107 3.893 15 C -0.151 4.151 16 C 0.199 3.801 17 N -0.621 5.621 18 C -0.237 4.237 19 H 0.087 0.913 20 C -0.069 4.069 21 N -0.954 5.954 22 Si 0.981 3.019 23 H -0.286 1.286 24 H -0.266 1.266 25 H -0.296 1.296 26 C 0.147 3.853 27 O -0.364 6.364 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.115 0.885 33 H 0.184 0.816 34 H 0.213 0.787 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.008 0.992 40 H 0.004 0.996 41 H 0.245 0.755 42 H 0.052 0.948 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.095 -5.149 -23.291 24.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.006 3.994 3 H 0.069 0.931 4 C -0.050 4.050 5 N -0.337 5.337 6 C 0.386 3.614 7 O -0.438 6.438 8 C -0.432 4.432 9 C -0.140 4.140 10 C -0.125 4.125 11 N -0.382 5.382 12 S 0.623 5.377 13 C -0.015 4.015 14 C 0.066 3.934 15 C -0.190 4.190 16 C 0.073 3.927 17 N -0.347 5.347 18 C -0.366 4.366 19 H 0.104 0.896 20 C -0.262 4.262 21 N -0.603 5.603 22 Si 0.809 3.191 23 H -0.213 1.213 24 H -0.191 1.191 25 H -0.223 1.223 26 C 0.021 3.979 27 O -0.283 6.283 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.133 0.867 33 H 0.202 0.798 34 H 0.229 0.771 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.026 0.974 40 H 0.022 0.978 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.654 -5.871 -23.217 24.855 hybrid contribution 2.015 1.448 1.130 2.727 sum -4.639 -4.423 -22.087 22.998 Atomic orbital electron populations 1.21758 0.89888 1.04340 1.03623 1.22683 0.97284 0.95151 0.84253 0.93071 1.23029 0.78721 1.04108 0.99160 1.48034 1.07663 1.61889 1.16133 1.17046 0.85521 0.76516 0.82296 1.90811 1.15200 1.55420 1.82345 1.26726 1.04900 1.10748 1.00817 1.22406 1.03027 0.97365 0.91194 1.22620 0.87183 1.01281 1.01453 1.72166 1.24756 1.18055 1.23197 1.81651 1.09074 1.43837 1.03148 1.22051 1.00034 0.98332 0.81054 1.22162 0.81735 0.94714 0.94829 1.23188 1.00742 0.97684 0.97357 1.20744 0.97123 0.87255 0.87534 1.44706 1.85745 1.01627 1.02654 1.19483 1.41779 0.93290 0.82068 0.89563 1.25679 1.02741 0.95082 1.02666 1.70208 1.58228 0.97519 1.34375 0.85042 0.77478 0.77093 0.79505 1.21322 1.19099 1.22289 1.21595 0.98473 0.91652 0.86162 1.87902 1.19554 1.77024 1.43830 0.90143 0.92864 0.87813 0.88099 0.86720 0.79837 0.77055 0.88499 0.87872 0.91147 0.91158 0.97402 0.97808 0.94573 0.93012 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.57 71.98 0.69 -1.91 16 2 C 0.06 1.59 3.19 30.69 0.10 1.69 16 3 H 0.05 1.42 6.22 -2.39 -0.01 1.41 16 4 C 0.07 1.39 5.08 86.34 0.44 1.83 16 5 N -0.60 -14.71 2.95 -822.94 -2.42 -17.14 16 6 C 0.60 15.64 7.68 86.57 0.66 16.31 16 7 O -0.56 -18.54 16.50 -4.12 -0.07 -18.61 16 8 C -0.30 -5.95 6.24 24.63 0.15 -5.80 16 9 C -0.10 -1.69 10.46 22.15 0.23 -1.46 16 10 C 0.07 0.90 11.15 84.87 0.95 1.84 16 11 N -0.55 -9.25 11.29 -85.47 -0.96 -10.22 16 12 S 0.47 6.90 19.53 -56.49 -1.10 5.80 16 13 C 0.11 2.97 5.32 86.01 0.46 3.43 16 14 C 0.11 3.70 0.84 -10.08 -0.01 3.69 16 15 C -0.15 -5.98 5.86 31.56 0.19 -5.80 16 16 C 0.20 10.33 5.38 86.76 0.47 10.80 16 17 N -0.62 -32.72 3.40 -692.26 -2.35 -35.08 16 18 C -0.24 -13.53 10.28 84.03 0.86 -12.67 16 19 H 0.09 4.64 7.83 -2.91 -0.02 4.62 16 20 C -0.07 -4.02 5.49 84.86 0.47 -3.56 16 21 N -0.95 -59.01 10.31 21.65 0.22 -58.78 16 22 Si 0.98 46.58 29.55 68.60 2.03 48.61 16 23 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 26 C 0.15 5.97 6.43 86.63 0.56 6.53 16 27 O -0.36 -12.34 9.94 -148.95 -1.48 -13.83 16 28 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.10 1.52 3.77 -20.16 -0.08 1.44 16 32 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.18 2.58 8.06 -2.91 -0.02 2.55 16 34 H 0.21 1.39 8.06 -2.91 -0.02 1.37 16 35 H 0.10 2.90 6.84 -2.38 -0.02 2.88 16 36 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.07 2.63 6.07 -2.38 -0.01 2.62 16 38 H 0.07 2.72 7.83 -2.38 -0.02 2.70 16 39 H 0.01 0.46 7.38 -2.38 -0.02 0.44 16 40 H 0.00 0.22 7.50 -2.39 -0.02 0.20 16 41 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 42 H 0.05 1.98 8.00 -2.38 -0.02 1.96 16 43 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -76.56 352.49 1.03 -75.53 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 0.97 Total: 8.79 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 6.21 Total: 14.92 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -5.52 Total: -121.22 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -1.55 Total: -32.43 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Atomic # 16 Polarization: 6.90 SS G_CDS: -1.10 Total: 5.80 kcal Total: -76.56 1.03 -75.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071174141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.867 kcal (2) G-P(sol) polarization free energy of solvation -76.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds