Wall clock time and date at job start Tue Mar 31 2020 20:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.51607 * 2 1 4 4 C 1.53280 * 109.50961 * 239.89723 * 2 1 3 5 5 N 1.47173 * 108.56504 * 187.06086 * 4 2 1 6 6 C 1.34772 * 121.08261 * 231.26629 * 5 4 2 7 7 O 1.21576 * 120.00107 * 358.56100 * 6 5 4 8 8 C 1.47693 * 120.00004 * 178.56410 * 6 5 4 9 9 C 1.39483 * 122.10412 * 187.82976 * 8 6 5 10 10 C 1.35000 * 111.68937 * 179.97438 * 9 8 6 11 11 S 1.71763 * 105.44404 * 359.97438 * 10 9 8 12 12 N 1.30597 * 122.10349 * 7.53855 * 8 6 5 13 13 C 1.47331 * 117.83328 * 51.24833 * 5 4 2 14 14 C 1.52365 * 108.41570 * 310.82040 * 13 5 4 15 15 C 1.54360 * 110.41472 * 173.58595 * 14 13 5 16 16 C 1.54477 * 102.95167 * 152.17105 * 15 14 13 17 17 N 1.47077 * 107.29400 * 338.87095 * 16 15 14 18 18 C 1.36941 * 125.63206 * 178.87834 * 17 16 15 19 19 H 1.08001 * 120.00065 * 184.80161 * 18 17 16 20 20 C 1.38806 * 119.99479 * 4.80647 * 18 17 16 21 21 N 1.31617 * 120.00548 * 354.80000 * 20 18 17 22 22 Si 1.86807 * 119.99727 * 174.80166 * 20 18 17 23 23 H 1.48502 * 109.46716 * 274.99712 * 22 20 18 24 24 H 1.48495 * 109.47125 * 34.99825 * 22 20 18 25 25 H 1.48504 * 109.47011 * 155.00175 * 22 20 18 26 26 C 1.47575 * 108.73917 * 358.61838 * 17 16 15 27 27 O 1.41876 * 111.45566 * 50.05036 * 14 13 5 28 28 H 1.08991 * 109.46967 * 180.10128 * 1 2 3 29 29 H 1.08999 * 109.46456 * 300.10039 * 1 2 3 30 30 H 1.08999 * 109.47252 * 60.09673 * 1 2 3 31 31 H 1.09004 * 109.62073 * 67.34437 * 4 2 1 32 32 H 1.08997 * 109.62623 * 306.78717 * 4 2 1 33 33 H 1.08005 * 124.15891 * 359.95962 * 9 8 6 34 34 H 1.07990 * 127.28152 * 179.97438 * 10 9 8 35 35 H 1.09003 * 109.67220 * 191.09228 * 13 5 4 36 36 H 1.09000 * 109.70980 * 70.57378 * 13 5 4 37 37 H 1.08997 * 110.73398 * 270.73368 * 15 14 13 38 38 H 1.09003 * 110.72898 * 33.86147 * 15 14 13 39 39 H 1.08996 * 109.99447 * 219.37990 * 16 15 14 40 40 H 1.09005 * 109.76069 * 98.23182 * 16 15 14 41 41 H 0.97004 * 120.00748 * 180.02562 * 21 20 18 42 42 H 1.09008 * 110.37647 * 142.38999 * 26 17 16 43 43 H 1.08995 * 110.37481 * 264.62022 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0419 -0.7246 -1.2499 5 7 3.5035 -0.8626 -1.1460 6 6 4.3123 -0.4737 -2.1514 7 8 3.8360 -0.0242 -3.1756 8 6 5.7775 -0.5937 -2.0090 9 6 6.6597 -0.0607 -2.9487 10 6 7.9466 -0.2906 -2.6115 11 16 7.8833 -1.1609 -1.1321 12 7 6.3286 -1.2007 -0.9924 13 6 4.0536 -1.4393 0.0931 14 6 3.4217 -0.7222 1.2797 15 6 3.8433 -1.3962 2.6029 16 6 3.7709 -0.2363 3.6206 17 7 3.8529 1.0193 2.8591 18 6 3.8018 2.2800 3.3915 19 1 3.7926 3.1413 2.7400 20 6 3.7618 2.4507 4.7684 21 7 3.6697 1.4026 5.5592 22 14 3.8386 4.1682 5.4992 23 1 5.2573 4.5867 5.6314 24 1 3.1234 5.1174 4.6090 25 1 3.1964 4.1656 6.8382 26 6 4.0057 0.6963 1.4273 27 8 2.0082 -0.6777 1.1664 28 1 -0.3633 -1.0276 0.0018 29 1 -0.3632 0.5154 0.8891 30 1 -0.3634 0.5123 -0.8908 31 1 1.7914 -0.1442 -2.1379 32 1 1.5847 -1.7120 -1.3137 33 1 6.3513 0.4705 -3.8371 34 1 8.8292 0.0092 -3.1567 35 1 5.1346 -1.3010 0.1139 36 1 3.8188 -2.5027 0.1395 37 1 3.1472 -2.1913 2.8699 38 1 4.8600 -1.7829 2.5321 39 1 4.6049 -0.3011 4.3195 40 1 2.8262 -0.2801 4.1627 41 1 3.6414 1.5219 6.5215 42 1 3.4442 1.4034 0.8167 43 1 5.0588 0.7062 1.1464 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071178014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:15 Heat of formation + Delta-G solvation = 25.376913 kcal Electronic energy + Delta-G solvation = -28536.260222 eV Core-core repulsion = 24710.515211 eV Total energy + Delta-G solvation = -3825.745011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.01017 -39.50770 -38.12088 -36.16528 -34.76936 -33.09402 -31.83013 -31.25965 -29.37695 -28.19364 -27.65381 -25.95140 -25.17112 -23.67207 -22.08946 -21.28293 -20.13647 -19.75205 -19.08379 -18.66644 -17.32995 -16.87192 -16.48970 -15.98348 -15.58602 -15.16779 -14.74598 -14.48529 -14.24496 -14.01297 -13.73436 -13.55183 -13.42587 -13.35921 -13.11575 -12.51351 -12.29866 -12.13991 -11.99721 -11.73193 -11.50363 -11.41906 -11.04280 -10.85627 -10.82715 -10.71330 -10.37919 -10.20923 -10.17306 -10.09517 -10.05285 -9.64980 -9.50969 -9.38404 -9.02699 -8.54482 -8.29722 -6.77626 -5.68239 -3.00441 0.36526 1.24516 1.58783 1.61851 2.85815 3.14180 3.41797 3.46585 3.48410 3.98727 4.31571 4.51517 4.58842 4.85078 5.06662 5.11020 5.15686 5.21717 5.30730 5.35159 5.49713 5.55415 5.57952 5.61570 5.71539 5.75733 5.78560 5.91900 6.04150 6.11430 6.16520 6.23545 6.30712 6.44652 6.51671 6.51839 6.61838 6.67743 7.30268 7.58862 7.66174 7.77929 7.86604 8.00281 8.29307 9.25337 9.85202 10.52029 11.43763 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.011160 B = 0.004480 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.421004 B = 6248.764972 C = 7540.371193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.072 3.928 3 H 0.067 0.933 4 C 0.084 3.916 5 N -0.590 5.590 6 C 0.592 3.408 7 O -0.537 6.537 8 C 0.055 3.945 9 C -0.134 4.134 10 C -0.278 4.278 11 S 0.455 5.545 12 N -0.506 5.506 13 C 0.059 3.941 14 C 0.093 3.907 15 C -0.128 4.128 16 C 0.183 3.817 17 N -0.597 5.597 18 C -0.227 4.227 19 H 0.074 0.926 20 C -0.006 4.006 21 N -0.919 5.919 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.283 1.283 25 H -0.290 1.290 26 C 0.123 3.877 27 O -0.349 6.349 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.171 0.829 34 H 0.186 0.814 35 H 0.157 0.843 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.252 0.748 42 H 0.037 0.963 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.747 -8.427 -15.959 18.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.013 3.987 3 H 0.085 0.915 4 C -0.039 4.039 5 N -0.321 5.321 6 C 0.376 3.624 7 O -0.414 6.414 8 C -0.118 4.118 9 C -0.166 4.166 10 C -0.427 4.427 11 S 0.614 5.386 12 N -0.341 5.341 13 C -0.067 4.067 14 C 0.051 3.949 15 C -0.167 4.167 16 C 0.058 3.942 17 N -0.324 5.324 18 C -0.355 4.355 19 H 0.092 0.908 20 C -0.202 4.202 21 N -0.567 5.567 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.208 1.208 25 H -0.217 1.217 26 C -0.004 4.004 27 O -0.268 6.268 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.094 0.906 33 H 0.189 0.811 34 H 0.204 0.796 35 H 0.172 0.828 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 5.948 -9.218 -14.400 18.102 hybrid contribution -0.569 1.970 -1.226 2.389 sum 5.378 -7.248 -15.625 18.045 Atomic orbital electron populations 1.21669 0.92414 1.02770 1.02803 1.22437 0.95338 0.96226 0.84686 0.91486 1.22467 0.79097 1.02004 1.00328 1.48020 1.06710 1.60560 1.16848 1.17276 0.83916 0.77997 0.83227 1.90773 1.75385 1.46680 1.28576 1.21127 0.96650 1.01930 0.92119 1.21350 0.90846 1.02538 1.01874 1.27175 1.01923 1.07879 1.05717 1.80842 1.02486 1.41549 1.13768 1.72538 1.10108 1.25702 1.25714 1.23570 1.04112 0.97145 0.81841 1.22343 0.81286 0.96826 0.94450 1.22819 1.00059 0.99912 0.93910 1.21160 1.01111 0.81335 0.90574 1.44403 1.85898 1.02485 0.99572 1.18997 1.43769 0.82563 0.90169 0.90787 1.24773 1.02225 0.97312 0.95895 1.69963 1.56557 1.27245 1.02925 0.86174 0.77617 0.83719 0.78479 1.21592 1.20836 1.21657 1.21884 0.96691 0.93211 0.88599 1.87828 1.20174 1.76558 1.42232 0.91893 0.91042 0.91222 0.88315 0.90585 0.81121 0.79624 0.82766 0.91137 0.90946 0.90984 0.93565 0.93511 0.93763 0.94497 0.96258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.57 37.16 0.36 -1.46 16 2 C 0.07 1.16 3.20 -26.58 -0.08 1.07 16 3 H 0.07 1.22 6.26 -51.93 -0.32 0.89 16 4 C 0.08 1.21 5.90 -3.53 -0.02 1.18 16 5 N -0.59 -9.24 2.96 -173.85 -0.51 -9.75 16 6 C 0.59 9.41 7.70 -12.40 -0.10 9.31 16 7 O -0.54 -9.37 16.16 5.30 0.09 -9.28 16 8 C 0.06 0.76 6.55 -84.07 -0.55 0.21 16 9 C -0.13 -1.48 9.98 -40.27 -0.40 -1.88 16 10 C -0.28 -2.31 11.41 29.58 0.34 -1.97 16 11 S 0.46 4.19 23.20 -107.50 -2.49 1.70 16 12 N -0.51 -6.56 7.23 24.84 0.18 -6.38 16 13 C 0.06 0.93 5.00 -3.91 -0.02 0.91 16 14 C 0.09 1.74 0.83 -89.65 -0.07 1.67 16 15 C -0.13 -2.48 6.12 -25.24 -0.15 -2.63 16 16 C 0.18 4.55 5.39 -2.95 -0.02 4.54 16 17 N -0.60 -15.75 3.40 -170.31 -0.58 -16.33 16 18 C -0.23 -6.50 10.27 -15.06 -0.15 -6.65 16 19 H 0.07 2.07 7.83 -52.49 -0.41 1.66 16 20 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 21 N -0.92 -27.34 10.34 55.49 0.57 -26.76 16 22 Si 0.91 22.48 29.56 -169.99 -5.02 17.45 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 26 C 0.12 2.71 6.18 -2.87 -0.02 2.69 16 27 O -0.35 -6.72 9.92 -35.22 -0.35 -7.07 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.10 1.38 7.08 -51.93 -0.37 1.01 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.17 1.73 8.00 -52.48 -0.42 1.31 16 34 H 0.19 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.16 2.43 3.58 -86.74 -0.31 2.12 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.07 1.24 7.99 -51.93 -0.42 0.82 16 39 H 0.05 1.25 7.38 -51.93 -0.38 0.86 16 40 H 0.05 1.30 7.52 -51.93 -0.39 0.91 16 41 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.04 0.84 6.09 -51.92 -0.32 0.53 16 43 H 0.02 0.44 7.82 -51.93 -0.41 0.03 16 LS Contribution 352.45 15.07 5.31 5.31 Total: -1.00 -33.78 352.45 -9.64 -43.42 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.84 Total: 0.96 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -0.99 Total: 6.73 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -0.34 Total: -59.23 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.26 Total: -16.35 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -2.49 Total: 1.70 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.78 -9.64 -43.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071178014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.799 kcal (2) G-P(sol) polarization free energy of solvation -33.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds