Wall clock time and date at job start Tue Mar 31 2020 20:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.51607 * 2 1 4 4 C 1.53280 * 109.50961 * 239.89723 * 2 1 3 5 5 N 1.47173 * 108.56504 * 187.06086 * 4 2 1 6 6 C 1.34772 * 121.08261 * 231.26629 * 5 4 2 7 7 O 1.21576 * 120.00107 * 358.56100 * 6 5 4 8 8 C 1.47693 * 120.00004 * 178.56410 * 6 5 4 9 9 C 1.39483 * 122.10412 * 187.82976 * 8 6 5 10 10 C 1.35000 * 111.68937 * 179.97438 * 9 8 6 11 11 S 1.71763 * 105.44404 * 359.97438 * 10 9 8 12 12 N 1.30597 * 122.10349 * 7.53855 * 8 6 5 13 13 C 1.47331 * 117.83328 * 51.24833 * 5 4 2 14 14 C 1.52365 * 108.41570 * 310.82040 * 13 5 4 15 15 C 1.54360 * 110.41472 * 173.58595 * 14 13 5 16 16 C 1.54477 * 102.95167 * 152.17105 * 15 14 13 17 17 N 1.47077 * 107.29400 * 338.87095 * 16 15 14 18 18 C 1.36941 * 125.63206 * 178.87834 * 17 16 15 19 19 H 1.08001 * 120.00065 * 184.80161 * 18 17 16 20 20 C 1.38806 * 119.99479 * 4.80647 * 18 17 16 21 21 N 1.31617 * 120.00548 * 354.80000 * 20 18 17 22 22 Si 1.86807 * 119.99727 * 174.80166 * 20 18 17 23 23 H 1.48502 * 109.46716 * 274.99712 * 22 20 18 24 24 H 1.48495 * 109.47125 * 34.99825 * 22 20 18 25 25 H 1.48504 * 109.47011 * 155.00175 * 22 20 18 26 26 C 1.47575 * 108.73917 * 358.61838 * 17 16 15 27 27 O 1.41876 * 111.45566 * 50.05036 * 14 13 5 28 28 H 1.08991 * 109.46967 * 180.10128 * 1 2 3 29 29 H 1.08999 * 109.46456 * 300.10039 * 1 2 3 30 30 H 1.08999 * 109.47252 * 60.09673 * 1 2 3 31 31 H 1.09004 * 109.62073 * 67.34437 * 4 2 1 32 32 H 1.08997 * 109.62623 * 306.78717 * 4 2 1 33 33 H 1.08005 * 124.15891 * 359.95962 * 9 8 6 34 34 H 1.07990 * 127.28152 * 179.97438 * 10 9 8 35 35 H 1.09003 * 109.67220 * 191.09228 * 13 5 4 36 36 H 1.09000 * 109.70980 * 70.57378 * 13 5 4 37 37 H 1.08997 * 110.73398 * 270.73368 * 15 14 13 38 38 H 1.09003 * 110.72898 * 33.86147 * 15 14 13 39 39 H 1.08996 * 109.99447 * 219.37990 * 16 15 14 40 40 H 1.09005 * 109.76069 * 98.23182 * 16 15 14 41 41 H 0.97004 * 120.00748 * 180.02562 * 21 20 18 42 42 H 1.09008 * 110.37647 * 142.38999 * 26 17 16 43 43 H 1.08995 * 110.37481 * 264.62022 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0419 -0.7246 -1.2499 5 7 3.5035 -0.8626 -1.1460 6 6 4.3123 -0.4737 -2.1514 7 8 3.8360 -0.0242 -3.1756 8 6 5.7775 -0.5937 -2.0090 9 6 6.6597 -0.0607 -2.9487 10 6 7.9466 -0.2906 -2.6115 11 16 7.8833 -1.1609 -1.1321 12 7 6.3286 -1.2007 -0.9924 13 6 4.0536 -1.4393 0.0931 14 6 3.4217 -0.7222 1.2797 15 6 3.8433 -1.3962 2.6029 16 6 3.7709 -0.2363 3.6206 17 7 3.8529 1.0193 2.8591 18 6 3.8018 2.2800 3.3915 19 1 3.7926 3.1413 2.7400 20 6 3.7618 2.4507 4.7684 21 7 3.6697 1.4026 5.5592 22 14 3.8386 4.1682 5.4992 23 1 5.2573 4.5867 5.6314 24 1 3.1234 5.1174 4.6090 25 1 3.1964 4.1656 6.8382 26 6 4.0057 0.6963 1.4273 27 8 2.0082 -0.6777 1.1664 28 1 -0.3633 -1.0276 0.0018 29 1 -0.3632 0.5154 0.8891 30 1 -0.3634 0.5123 -0.8908 31 1 1.7914 -0.1442 -2.1379 32 1 1.5847 -1.7120 -1.3137 33 1 6.3513 0.4705 -3.8371 34 1 8.8292 0.0092 -3.1567 35 1 5.1346 -1.3010 0.1139 36 1 3.8188 -2.5027 0.1395 37 1 3.1472 -2.1913 2.8699 38 1 4.8600 -1.7829 2.5321 39 1 4.6049 -0.3011 4.3195 40 1 2.8262 -0.2801 4.1627 41 1 3.6414 1.5219 6.5215 42 1 3.4442 1.4034 0.8167 43 1 5.0588 0.7062 1.1464 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071178014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:14 Heat of formation + Delta-G solvation = 2.517274 kcal Electronic energy + Delta-G solvation = -28537.251490 eV Core-core repulsion = 24710.515211 eV Total energy + Delta-G solvation = -3826.736279 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.17906 -40.74936 -39.28512 -37.83858 -36.02623 -34.85241 -33.11163 -32.52935 -31.14006 -29.81472 -28.71171 -27.62383 -26.41045 -25.35551 -23.32570 -22.48856 -21.86656 -20.98035 -20.32888 -19.60808 -19.00118 -18.39068 -17.76133 -17.19769 -16.89166 -16.70406 -16.43089 -15.84361 -15.64024 -15.25919 -15.14534 -15.10324 -14.56314 -14.40161 -14.19947 -13.98578 -13.85609 -13.63730 -13.34006 -13.19288 -13.05044 -12.82983 -12.72885 -12.29347 -12.22359 -12.10989 -12.07827 -12.02219 -11.76657 -11.69899 -11.55131 -10.99784 -10.89814 -10.70767 -10.51049 -9.88544 -9.54897 -8.91366 -7.87978 -5.23164 -0.48583 0.50753 0.70155 0.77745 1.42331 1.44911 1.53007 1.73462 2.05398 2.46051 2.62446 3.26955 3.30484 3.48263 3.69266 3.70496 3.77767 3.92100 3.94412 4.03287 4.18968 4.37803 4.39135 4.47900 4.54194 4.56136 4.60328 4.65155 4.73707 4.82813 4.88248 4.91850 4.93840 5.00724 5.10307 5.15531 5.22218 5.38534 5.40481 5.63663 5.73093 6.11991 6.15907 6.34586 6.83520 7.07254 7.72622 8.38353 9.22502 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.011160 B = 0.004480 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.421004 B = 6248.764972 C = 7540.371193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.069 3.931 3 H 0.038 0.962 4 C 0.089 3.911 5 N -0.596 5.596 6 C 0.587 3.413 7 O -0.562 6.562 8 C 0.029 3.971 9 C -0.153 4.153 10 C -0.255 4.255 11 S 0.514 5.486 12 N -0.543 5.543 13 C 0.068 3.932 14 C 0.101 3.899 15 C -0.115 4.115 16 C 0.192 3.808 17 N -0.618 5.618 18 C -0.248 4.248 19 H 0.072 0.928 20 C -0.058 4.058 21 N -0.946 5.946 22 Si 0.977 3.023 23 H -0.281 1.281 24 H -0.274 1.274 25 H -0.291 1.291 26 C 0.126 3.874 27 O -0.370 6.370 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.174 0.826 34 H 0.225 0.775 35 H 0.164 0.836 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.018 0.982 40 H 0.006 0.994 41 H 0.249 0.751 42 H 0.023 0.977 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.252 -9.073 -17.517 21.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.010 3.990 3 H 0.056 0.944 4 C -0.034 4.034 5 N -0.327 5.327 6 C 0.372 3.628 7 O -0.441 6.441 8 C -0.142 4.142 9 C -0.184 4.184 10 C -0.404 4.404 11 S 0.672 5.328 12 N -0.379 5.379 13 C -0.057 4.057 14 C 0.060 3.940 15 C -0.154 4.154 16 C 0.067 3.933 17 N -0.344 5.344 18 C -0.376 4.376 19 H 0.090 0.910 20 C -0.252 4.252 21 N -0.594 5.594 22 Si 0.805 3.195 23 H -0.208 1.208 24 H -0.199 1.199 25 H -0.217 1.217 26 C 0.000 4.000 27 O -0.290 6.290 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.114 0.886 33 H 0.192 0.808 34 H 0.242 0.758 35 H 0.179 0.821 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.117 0.883 39 H 0.036 0.964 40 H 0.024 0.976 41 H 0.058 0.942 42 H 0.041 0.959 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 7.444 -9.868 -15.994 20.214 hybrid contribution -0.927 2.194 -0.758 2.499 sum 6.517 -7.674 -16.751 19.544 Atomic orbital electron populations 1.21676 0.90135 1.03952 1.03221 1.22594 0.97109 0.94634 0.84629 0.94420 1.22457 0.78894 1.02833 0.99189 1.48107 1.07158 1.60623 1.16791 1.17667 0.85110 0.77236 0.82794 1.90741 1.76213 1.47748 1.29408 1.21020 0.95699 1.03971 0.93538 1.21438 0.91616 1.03415 1.01966 1.27604 1.02107 1.05698 1.05000 1.80594 0.99286 1.39763 1.13162 1.72052 1.12843 1.26642 1.26375 1.23496 1.04444 0.97401 0.80387 1.22244 0.81444 0.94667 0.95663 1.22712 1.02276 0.98002 0.92385 1.20891 0.97688 0.83205 0.91512 1.44677 1.85808 1.02295 1.01593 1.19318 1.43844 0.83764 0.90717 0.91045 1.25611 1.02142 1.01234 0.96195 1.70179 1.57241 1.29194 1.02768 0.85131 0.77781 0.79233 0.77378 1.20767 1.19935 1.21675 1.21968 0.96696 0.95270 0.86077 1.87800 1.20314 1.76824 1.44026 0.90280 0.92856 0.88551 0.87955 0.88557 0.80840 0.75805 0.82083 0.89354 0.89286 0.88280 0.96418 0.97620 0.94196 0.95882 0.95997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 9.57 71.98 0.69 -2.69 16 2 C 0.07 2.21 3.20 30.69 0.10 2.31 16 3 H 0.04 1.43 6.26 -2.39 -0.01 1.41 16 4 C 0.09 2.47 5.90 86.34 0.51 2.98 16 5 N -0.60 -18.20 2.96 -822.22 -2.43 -20.63 16 6 C 0.59 18.38 7.70 86.74 0.67 19.04 16 7 O -0.56 -19.57 16.16 -3.95 -0.06 -19.63 16 8 C 0.03 0.77 6.55 42.13 0.28 1.04 16 9 C -0.15 -3.09 9.98 21.82 0.22 -2.87 16 10 C -0.26 -3.34 11.41 67.07 0.77 -2.58 16 11 S 0.51 7.91 23.20 -56.49 -1.31 6.60 16 12 N -0.54 -13.07 7.23 -75.34 -0.54 -13.61 16 13 C 0.07 2.06 5.00 86.01 0.43 2.49 16 14 C 0.10 3.79 0.83 -10.17 -0.01 3.78 16 15 C -0.12 -4.40 6.12 31.56 0.19 -4.21 16 16 C 0.19 9.90 5.39 86.77 0.47 10.37 16 17 N -0.62 -33.63 3.40 -692.73 -2.36 -35.99 16 18 C -0.25 -14.62 10.27 84.03 0.86 -13.76 16 19 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 20 C -0.06 -3.42 5.48 84.86 0.47 -2.96 16 21 N -0.95 -58.07 10.34 21.65 0.22 -57.85 16 22 Si 0.98 46.99 29.56 68.60 2.03 49.01 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 24 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 26 C 0.13 5.66 6.18 86.55 0.53 6.20 16 27 O -0.37 -14.29 9.92 -148.95 -1.48 -15.76 16 28 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.10 1.91 8.14 -2.39 -0.02 1.90 16 31 H 0.10 2.79 7.08 -2.38 -0.02 2.77 16 32 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.17 3.31 8.00 -2.91 -0.02 3.29 16 34 H 0.23 1.09 8.06 -2.92 -0.02 1.06 16 35 H 0.16 4.83 3.58 -71.13 -0.25 4.58 16 36 H 0.09 2.38 8.14 -2.39 -0.02 2.37 16 37 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.10 3.24 7.99 -2.39 -0.02 3.22 16 39 H 0.02 0.99 7.38 -2.39 -0.02 0.98 16 40 H 0.01 0.33 7.52 -2.38 -0.02 0.31 16 41 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 42 H 0.02 1.09 6.09 -2.38 -0.01 1.08 16 43 H 0.02 0.99 7.82 -2.39 -0.02 0.97 16 Total: -1.00 -76.64 352.45 1.03 -75.61 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.79 Total: 13.09 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 6.17 Total: 19.16 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -5.11 Total: -128.09 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -1.54 Total: -35.40 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.01 kcal Atomic # 16 Polarization: 7.91 SS G_CDS: -1.31 Total: 6.60 kcal Total: -76.64 1.03 -75.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071178014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.129 kcal (2) G-P(sol) polarization free energy of solvation -76.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds