Wall clock time and date at job start Tue Mar 31 2020 20:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.55180 * 2 1 4 4 C 1.53273 * 109.51051 * 239.88339 * 2 1 3 5 5 N 1.47147 * 108.70775 * 187.29889 * 4 2 1 6 6 C 1.34781 * 121.05476 * 230.98202 * 5 4 2 7 7 O 1.21581 * 120.00120 * 358.59749 * 6 5 4 8 8 C 1.47691 * 119.99736 * 178.59434 * 6 5 4 9 9 C 1.39489 * 122.10365 * 187.86219 * 8 6 5 10 10 C 1.34992 * 111.68498 * 179.97438 * 9 8 6 11 11 S 1.71755 * 105.45291 * 359.97438 * 10 9 8 12 12 N 1.30602 * 122.10653 * 7.57519 * 8 6 5 13 13 C 1.47306 * 117.88471 * 51.00318 * 5 4 2 14 14 C 1.52521 * 108.38967 * 310.60130 * 13 5 4 15 15 C 1.54515 * 110.04860 * 287.97485 * 14 13 5 16 16 C 1.55024 * 101.51883 * 206.89384 * 15 14 13 17 17 N 1.47493 * 104.89821 * 36.37604 * 16 15 14 18 18 C 1.36934 * 125.66700 * 155.98378 * 17 16 15 19 19 H 1.07996 * 120.00108 * 180.02562 * 18 17 16 20 20 C 1.38817 * 119.99652 * 0.02562 * 18 17 16 21 21 N 1.31611 * 120.00221 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46881 * 60.00527 * 22 20 18 24 24 H 1.48498 * 109.46901 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47613 * 300.00426 * 22 20 18 26 26 C 1.47190 * 108.66743 * 335.97777 * 17 16 15 27 27 O 1.42072 * 111.09410 * 50.46405 * 14 13 5 28 28 H 1.08996 * 109.47271 * 180.11927 * 1 2 3 29 29 H 1.09007 * 109.46873 * 300.11922 * 1 2 3 30 30 H 1.09004 * 109.47012 * 60.11607 * 1 2 3 31 31 H 1.08998 * 109.62526 * 67.47958 * 4 2 1 32 32 H 1.09005 * 109.61531 * 307.10603 * 4 2 1 33 33 H 1.08003 * 124.15395 * 0.02562 * 9 8 6 34 34 H 1.08010 * 127.27210 * 179.97438 * 10 9 8 35 35 H 1.08998 * 109.67851 * 70.33033 * 13 5 4 36 36 H 1.08997 * 109.67660 * 190.87824 * 13 5 4 37 37 H 1.08996 * 111.01798 * 324.94856 * 15 14 13 38 38 H 1.08998 * 111.02004 * 88.83458 * 15 14 13 39 39 H 1.08997 * 110.35796 * 155.22842 * 16 15 14 40 40 H 1.09000 * 110.35364 * 277.52048 * 16 15 14 41 41 H 0.97002 * 119.99859 * 179.97438 * 21 20 18 42 42 H 1.09005 * 109.90396 * 242.13895 * 26 17 16 43 43 H 1.08993 * 109.90679 * 120.88316 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0419 -0.7249 -1.2497 5 7 3.5026 -0.8696 -1.1463 6 6 4.3122 -0.4880 -2.1540 7 8 3.8367 -0.0391 -3.1790 8 6 5.7768 -0.6150 -2.0130 9 6 6.6607 -0.0888 -2.9552 10 6 7.9466 -0.3244 -2.6189 11 16 7.8809 -1.1905 -1.1372 12 7 6.3262 -1.2222 -0.9956 13 6 4.0518 -1.4453 0.0934 14 6 3.4280 -0.7173 1.2796 15 6 4.0011 0.7139 1.3838 16 6 3.8460 0.9999 2.8995 17 7 4.1209 -0.2905 3.5589 18 6 4.5535 -0.4522 4.8480 19 1 4.7269 -1.4438 5.2391 20 6 4.7691 0.6586 5.6522 21 7 4.5573 1.8671 5.1758 22 14 5.3600 0.4381 7.4105 23 1 6.6691 -0.2629 7.4085 24 1 5.5114 1.7686 8.0524 25 1 4.3687 -0.3667 8.1687 26 6 3.8527 -1.3755 2.6012 27 8 2.0124 -0.6750 1.1667 28 1 -0.3633 -1.0276 0.0021 29 1 -0.3633 0.5157 0.8890 30 1 -0.3633 0.5121 -0.8911 31 1 1.7935 -0.1436 -2.1376 32 1 1.5802 -1.7101 -1.3161 33 1 6.3538 0.4425 -3.8441 34 1 8.8302 -0.0303 -3.1661 35 1 3.8084 -2.5065 0.1446 36 1 5.1339 -1.3151 0.1106 37 1 5.0496 0.7377 1.0868 38 1 3.4127 1.4147 0.7916 39 1 4.5686 1.7506 3.2196 40 1 2.8313 1.3304 3.1211 41 1 4.7076 2.6432 5.7379 42 1 3.0490 -2.0102 2.9749 43 1 4.7553 -1.9669 2.4482 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071178016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:20 Heat of formation + Delta-G solvation = 26.928227 kcal Electronic energy + Delta-G solvation = -28424.856205 eV Core-core repulsion = 24599.178464 eV Total energy + Delta-G solvation = -3825.677741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.03204 -39.53515 -38.13387 -36.20892 -34.80131 -33.07695 -31.82497 -31.29959 -29.25110 -28.42378 -27.68390 -25.88908 -25.20465 -23.62131 -22.15383 -21.30642 -20.10435 -19.73546 -19.12851 -18.68332 -17.32756 -17.01967 -16.46354 -15.95886 -15.62512 -15.16967 -14.84278 -14.46327 -14.22538 -14.16270 -13.77406 -13.54434 -13.31835 -13.22675 -13.04017 -12.64280 -12.38238 -12.20437 -12.15569 -11.66253 -11.51034 -11.39170 -11.05389 -10.97273 -10.84919 -10.70780 -10.43085 -10.29165 -10.11163 -10.09404 -9.97342 -9.60426 -9.50773 -9.39442 -9.02327 -8.62590 -8.32057 -6.81570 -5.62635 -3.04288 0.37540 1.25762 1.58814 1.62684 2.84188 3.12443 3.41970 3.45986 3.47483 3.91527 4.30617 4.50623 4.58930 4.79767 5.06212 5.08187 5.12832 5.16434 5.30159 5.32545 5.48527 5.50803 5.54505 5.58027 5.65262 5.70821 5.84070 5.89925 6.01982 6.06465 6.13274 6.22565 6.26034 6.50764 6.52798 6.54376 6.64034 6.72697 7.28123 7.56286 7.63155 7.71267 7.87365 7.98360 8.36692 9.23676 9.84220 10.49826 11.41375 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.011056 B = 0.004505 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.971078 B = 6214.043772 C = 8129.482216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.070 3.930 3 H 0.066 0.934 4 C 0.083 3.917 5 N -0.589 5.589 6 C 0.593 3.407 7 O -0.538 6.538 8 C 0.053 3.947 9 C -0.134 4.134 10 C -0.280 4.280 11 S 0.461 5.539 12 N -0.505 5.505 13 C 0.059 3.941 14 C 0.097 3.903 15 C -0.164 4.164 16 C 0.161 3.839 17 N -0.601 5.601 18 C -0.221 4.221 19 H 0.078 0.922 20 C -0.011 4.011 21 N -0.923 5.923 22 Si 0.915 3.085 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.155 3.845 27 O -0.356 6.356 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.171 0.829 34 H 0.186 0.814 35 H 0.070 0.930 36 H 0.159 0.841 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.105 0.895 40 H 0.014 0.986 41 H 0.252 0.748 42 H 0.036 0.964 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.381 -5.128 -17.202 18.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.012 3.988 3 H 0.084 0.916 4 C -0.039 4.039 5 N -0.320 5.320 6 C 0.377 3.623 7 O -0.415 6.415 8 C -0.121 4.121 9 C -0.167 4.167 10 C -0.429 4.429 11 S 0.619 5.381 12 N -0.340 5.340 13 C -0.067 4.067 14 C 0.056 3.944 15 C -0.203 4.203 16 C 0.036 3.964 17 N -0.327 5.327 18 C -0.349 4.349 19 H 0.096 0.904 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.745 3.255 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.029 3.971 27 O -0.275 6.275 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.094 0.906 33 H 0.188 0.812 34 H 0.204 0.796 35 H 0.088 0.912 36 H 0.174 0.826 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.123 0.877 40 H 0.032 0.968 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.661 -5.894 -15.672 17.139 hybrid contribution -0.436 0.942 -0.785 1.301 sum 3.225 -4.952 -16.458 17.486 Atomic orbital electron populations 1.21683 0.92363 1.02964 1.02729 1.22455 0.95294 0.96122 0.84940 0.91618 1.22428 0.79267 1.02054 1.00174 1.47990 1.06646 1.60680 1.16713 1.17278 0.83929 0.77943 0.83193 1.90772 1.75448 1.46750 1.28562 1.21119 0.96616 1.02169 0.92167 1.21338 0.90843 1.02649 1.01830 1.27199 1.01933 1.07931 1.05835 1.80923 1.02362 1.41470 1.13296 1.72545 1.10247 1.25471 1.25709 1.23609 1.04188 0.97099 0.81759 1.22298 0.80649 0.96540 0.94893 1.23477 0.99711 0.95259 1.01860 1.21877 0.99967 0.90015 0.84516 1.44490 1.78188 1.00357 1.09665 1.19026 1.36625 0.93028 0.86217 0.90434 1.24775 1.02050 0.95219 0.98572 1.69795 1.55194 0.97011 1.35141 0.86146 0.78569 0.76598 0.84140 1.21161 1.21618 1.21212 1.21031 0.97217 0.91984 0.86912 1.87888 1.20651 1.76875 1.42042 0.91756 0.91148 0.91133 0.88331 0.90573 0.81168 0.79628 0.91195 0.82589 0.91868 0.92231 0.87727 0.96783 0.93724 0.94629 0.94326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.58 37.16 0.36 -1.32 16 2 C 0.07 1.06 3.18 -26.59 -0.08 0.98 16 3 H 0.07 1.06 6.15 -51.93 -0.32 0.74 16 4 C 0.08 1.16 5.90 -3.55 -0.02 1.14 16 5 N -0.59 -9.09 2.91 -173.81 -0.51 -9.59 16 6 C 0.59 9.28 7.70 -12.40 -0.10 9.18 16 7 O -0.54 -9.21 16.16 5.29 0.09 -9.13 16 8 C 0.05 0.72 6.55 -84.06 -0.55 0.17 16 9 C -0.13 -1.47 9.98 -40.27 -0.40 -1.87 16 10 C -0.28 -2.35 11.40 29.58 0.34 -2.01 16 11 S 0.46 4.43 23.20 -107.50 -2.49 1.94 16 12 N -0.51 -6.72 7.23 24.84 0.18 -6.54 16 13 C 0.06 0.95 4.87 -3.85 -0.02 0.93 16 14 C 0.10 1.84 0.83 -89.74 -0.07 1.76 16 15 C -0.16 -3.35 5.91 -24.87 -0.15 -3.50 16 16 C 0.16 4.07 5.89 -2.43 -0.01 4.05 16 17 N -0.60 -15.71 3.40 -170.24 -0.58 -16.29 16 18 C -0.22 -6.19 10.28 -15.06 -0.15 -6.35 16 19 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 20 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 21 N -0.92 -27.15 10.09 55.49 0.56 -26.59 16 22 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 26 C 0.15 3.36 6.61 -3.34 -0.02 3.34 16 27 O -0.36 -6.66 9.87 -35.23 -0.35 -7.01 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.10 1.32 7.08 -51.93 -0.37 0.95 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.17 1.70 8.00 -52.48 -0.42 1.28 16 34 H 0.19 0.93 8.06 -52.48 -0.42 0.51 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.16 2.55 3.61 -87.13 -0.31 2.23 16 37 H 0.06 1.28 7.86 -51.93 -0.41 0.87 16 38 H 0.06 1.16 5.99 -51.93 -0.31 0.85 16 39 H 0.11 2.93 5.88 -51.93 -0.31 2.63 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 43 H 0.04 0.80 7.79 -51.93 -0.40 0.39 16 LS Contribution 351.39 15.07 5.30 5.30 Total: -1.00 -32.99 351.39 -9.59 -42.58 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.77 Total: 2.14 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -0.99 Total: 6.11 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: -0.35 Total: -59.01 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.26 Total: -16.14 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 4.43 SS G_CDS: -2.49 Total: 1.94 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.99 -9.59 -42.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071178016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.509 kcal (2) G-P(sol) polarization free energy of solvation -32.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds