Wall clock time and date at job start Tue Mar 31 2020 20:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.51200 * 2 1 4 4 C 1.53283 * 109.51353 * 120.10282 * 2 1 3 5 5 N 1.47163 * 108.54059 * 172.85172 * 4 2 1 6 6 C 1.34776 * 121.05904 * 128.90545 * 5 4 2 7 7 O 1.21578 * 119.99977 * 353.29469 * 6 5 4 8 8 C 1.47685 * 120.00174 * 173.28993 * 6 5 4 9 9 C 1.39479 * 122.10760 * 172.50886 * 8 6 5 10 10 C 1.35000 * 111.68689 * 180.02562 * 9 8 6 11 11 S 1.71752 * 105.45073 * 359.97438 * 10 9 8 12 12 N 1.30613 * 122.10056 * 352.22148 * 8 6 5 13 13 C 1.47307 * 117.88309 * 308.88533 * 5 4 2 14 14 C 1.52510 * 108.37943 * 49.41553 * 13 5 4 15 15 C 1.54519 * 110.06023 * 72.02664 * 14 13 5 16 16 C 1.55026 * 101.51766 * 153.09777 * 15 14 13 17 17 N 1.47486 * 104.90440 * 323.61991 * 16 15 14 18 18 C 1.36927 * 125.66633 * 204.02437 * 17 16 15 19 19 H 1.07997 * 120.00331 * 180.02562 * 18 17 16 20 20 C 1.38822 * 119.99914 * 0.03163 * 18 17 16 21 21 N 1.31619 * 119.99830 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00097 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47349 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.46644 * 299.99765 * 22 20 18 25 25 H 1.48497 * 109.47133 * 59.99194 * 22 20 18 26 26 C 1.47194 * 108.66903 * 24.29242 * 17 16 15 27 27 O 1.42072 * 111.09829 * 309.51747 * 14 13 5 28 28 H 1.09002 * 109.46651 * 299.89786 * 1 2 3 29 29 H 1.08996 * 109.47440 * 59.89931 * 1 2 3 30 30 H 1.09001 * 109.47368 * 179.90490 * 1 2 3 31 31 H 1.08999 * 109.62618 * 53.13229 * 4 2 1 32 32 H 1.09003 * 109.77885 * 292.65568 * 4 2 1 33 33 H 1.08002 * 124.16030 * 0.03634 * 9 8 6 34 34 H 1.08008 * 127.27267 * 180.02562 * 10 9 8 35 35 H 1.09002 * 109.68128 * 289.69298 * 13 5 4 36 36 H 1.08992 * 109.68186 * 169.14096 * 13 5 4 37 37 H 1.09004 * 111.01227 * 35.03878 * 15 14 13 38 38 H 1.08993 * 111.01571 * 271.16094 * 15 14 13 39 39 H 1.09005 * 110.34726 * 204.76726 * 16 15 14 40 40 H 1.08996 * 110.35449 * 82.48341 * 16 15 14 41 41 H 0.96994 * 119.99742 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.90783 * 117.59176 * 26 17 16 43 43 H 1.09005 * 109.90373 * 238.85452 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7246 1.2499 5 7 3.5032 -0.8641 1.1444 6 6 4.3130 -0.4786 2.1504 7 8 3.8518 0.1037 3.1128 8 6 5.7606 -0.7635 2.0837 9 6 6.6603 -0.2542 3.0199 10 6 7.9260 -0.6447 2.7592 11 16 7.8229 -1.6188 1.3483 12 7 6.2780 -1.5129 1.1474 13 6 4.0526 -1.4390 -0.0957 14 6 3.4244 -0.7140 -1.2813 15 6 3.9924 0.7191 -1.3877 16 6 3.8340 1.0032 -2.9034 17 7 4.1124 -0.2867 -3.5622 18 6 4.5437 -0.4479 -4.8517 19 1 4.7193 -1.4392 -5.2425 20 6 4.7554 0.6631 -5.6568 21 7 4.5411 1.8713 -5.1806 22 14 5.3432 0.4432 -7.4162 23 1 5.4906 1.7738 -8.0588 24 1 6.6538 -0.2552 -7.4165 25 1 4.3520 -0.3640 -8.1719 26 6 3.8433 -1.3723 -2.6052 27 8 2.0088 -0.6768 -1.1664 28 1 -0.3633 0.5123 0.8909 29 1 -0.3634 0.5154 -0.8890 30 1 -0.3634 -1.0277 -0.0017 31 1 1.5837 -1.7115 1.3145 32 1 1.7928 -0.1463 2.1396 33 1 6.3790 0.3752 3.8513 34 1 8.8154 -0.3976 3.3200 35 1 3.8126 -2.5011 -0.1457 36 1 5.1341 -1.3052 -0.1146 37 1 5.0412 0.7468 -1.0922 38 1 3.4025 1.4183 -0.7951 39 1 4.5534 1.7562 -3.2251 40 1 2.8178 1.3299 -3.1237 41 1 4.6887 2.6474 -5.7432 42 1 3.0384 -2.0053 -2.9787 43 1 4.7453 -1.9652 -2.4535 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071178017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:22 Heat of formation + Delta-G solvation = 24.536702 kcal Electronic energy + Delta-G solvation = -28363.823407 eV Core-core repulsion = 24538.041962 eV Total energy + Delta-G solvation = -3825.781445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.02119 -39.55957 -38.12846 -36.21414 -34.80512 -33.07557 -31.81714 -31.29923 -29.26196 -28.42812 -27.69188 -25.89412 -25.21214 -23.62822 -22.14219 -21.32475 -20.10098 -19.74479 -19.08804 -18.66527 -17.36359 -17.02610 -16.48830 -15.93038 -15.63562 -15.19100 -14.86143 -14.46528 -14.23535 -14.09760 -13.81231 -13.53949 -13.32955 -13.19683 -13.01242 -12.62268 -12.36427 -12.19259 -12.12918 -11.66186 -11.51032 -11.41073 -11.09253 -10.98388 -10.84963 -10.75715 -10.48385 -10.28865 -10.11563 -10.08939 -9.97862 -9.62617 -9.55016 -9.45487 -9.03471 -8.62846 -8.32471 -6.81958 -5.62836 -3.04609 0.37285 1.25486 1.57269 1.63296 2.83599 3.11310 3.41926 3.45909 3.47459 3.91759 4.30266 4.50384 4.59682 4.79586 5.05600 5.07665 5.12164 5.15642 5.29464 5.31832 5.48237 5.50616 5.53507 5.57519 5.64272 5.70147 5.82206 5.89073 6.02139 6.06202 6.09381 6.20879 6.22582 6.46652 6.51814 6.53904 6.63605 6.71970 7.27102 7.55931 7.62588 7.69903 7.87082 7.97731 8.36546 9.23421 9.83921 10.49434 11.41158 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.011089 B = 0.004386 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.491179 B = 6383.045109 C = 8253.207224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.070 3.930 3 H 0.067 0.933 4 C 0.084 3.916 5 N -0.591 5.591 6 C 0.594 3.406 7 O -0.537 6.537 8 C 0.050 3.950 9 C -0.134 4.134 10 C -0.282 4.282 11 S 0.462 5.538 12 N -0.506 5.506 13 C 0.076 3.924 14 C 0.095 3.905 15 C -0.165 4.165 16 C 0.161 3.839 17 N -0.601 5.601 18 C -0.221 4.221 19 H 0.078 0.922 20 C -0.011 4.011 21 N -0.923 5.923 22 Si 0.915 3.085 23 H -0.290 1.290 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.155 3.845 27 O -0.354 6.354 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.171 0.829 34 H 0.186 0.814 35 H 0.071 0.929 36 H 0.141 0.859 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.106 0.894 40 H 0.014 0.986 41 H 0.252 0.748 42 H 0.037 0.963 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.218 -5.940 17.533 18.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.011 3.989 3 H 0.085 0.915 4 C -0.039 4.039 5 N -0.323 5.323 6 C 0.378 3.622 7 O -0.414 6.414 8 C -0.123 4.123 9 C -0.166 4.166 10 C -0.431 4.431 11 S 0.619 5.381 12 N -0.341 5.341 13 C -0.048 4.048 14 C 0.054 3.946 15 C -0.204 4.204 16 C 0.036 3.964 17 N -0.327 5.327 18 C -0.349 4.349 19 H 0.096 0.904 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.746 3.254 23 H -0.216 1.216 24 H -0.212 1.212 25 H -0.212 1.212 26 C 0.029 3.971 27 O -0.273 6.273 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.188 0.812 34 H 0.204 0.796 35 H 0.090 0.910 36 H 0.158 0.842 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.123 0.877 40 H 0.032 0.968 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.431 -6.840 16.082 17.810 hybrid contribution -0.337 1.131 0.700 1.372 sum 3.094 -5.709 16.781 17.994 Atomic orbital electron populations 1.21685 0.92397 1.02946 1.02734 1.22451 0.95318 0.96171 0.84949 0.91523 1.22441 0.79138 1.02022 1.00273 1.47981 1.06657 1.61023 1.16598 1.17266 0.83739 0.78665 0.82562 1.90772 1.75397 1.41900 1.33327 1.21108 0.96907 1.00397 0.93896 1.21353 0.90885 1.02847 1.01533 1.27197 1.02237 1.07268 1.06365 1.80836 1.02389 1.38428 1.16417 1.72693 1.11291 1.23634 1.26481 1.23196 1.02612 0.97317 0.81699 1.22351 0.80776 0.96583 0.94891 1.23488 0.99721 0.95244 1.01940 1.21880 0.99954 0.90053 0.84497 1.44495 1.78144 1.00363 1.09714 1.19025 1.36678 0.93048 0.86176 0.90426 1.24780 1.02040 0.95222 0.98579 1.69794 1.55179 0.97026 1.35131 0.86141 0.78557 0.76604 0.84127 1.21610 1.21158 1.21205 1.21042 0.97264 0.91976 0.86865 1.87908 1.20568 1.76714 1.42124 0.91143 0.91154 0.91771 0.90558 0.88255 0.81168 0.79636 0.91035 0.84235 0.91906 0.92098 0.87678 0.96762 0.93712 0.94559 0.94348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.57 37.16 0.36 -1.32 16 2 C 0.07 1.05 3.17 -26.59 -0.08 0.96 16 3 H 0.07 1.08 6.13 -51.93 -0.32 0.76 16 4 C 0.08 1.16 5.93 -3.53 -0.02 1.14 16 5 N -0.59 -9.08 2.91 -173.80 -0.51 -9.59 16 6 C 0.59 9.29 7.68 -12.40 -0.10 9.19 16 7 O -0.54 -9.21 16.15 5.30 0.09 -9.13 16 8 C 0.05 0.69 6.48 -84.06 -0.54 0.14 16 9 C -0.13 -1.47 9.98 -40.27 -0.40 -1.87 16 10 C -0.28 -2.34 11.41 29.58 0.34 -2.01 16 11 S 0.46 4.33 23.20 -107.50 -2.49 1.84 16 12 N -0.51 -6.63 7.38 24.84 0.18 -6.45 16 13 C 0.08 1.23 4.64 -3.85 -0.02 1.21 16 14 C 0.09 1.79 0.83 -89.72 -0.07 1.72 16 15 C -0.17 -3.37 5.91 -24.86 -0.15 -3.52 16 16 C 0.16 4.07 5.89 -2.43 -0.01 4.05 16 17 N -0.60 -15.72 3.40 -170.21 -0.58 -16.30 16 18 C -0.22 -6.21 10.28 -15.06 -0.15 -6.36 16 19 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 20 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 21 N -0.92 -27.18 10.09 55.49 0.56 -26.62 16 22 Si 0.92 22.13 29.55 -169.99 -5.02 17.10 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 C 0.15 3.36 6.62 -3.31 -0.02 3.34 16 27 O -0.35 -6.61 9.86 -35.23 -0.35 -6.95 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.10 1.32 7.06 -51.93 -0.37 0.95 16 33 H 0.17 1.71 8.00 -52.49 -0.42 1.29 16 34 H 0.19 0.92 8.06 -52.48 -0.42 0.50 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.14 2.28 4.11 -66.54 -0.27 2.01 16 37 H 0.06 1.27 7.86 -51.93 -0.41 0.87 16 38 H 0.06 1.18 5.98 -51.93 -0.31 0.87 16 39 H 0.11 2.95 5.88 -51.93 -0.31 2.65 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 42 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 43 H 0.04 0.79 7.79 -51.93 -0.40 0.39 16 LS Contribution 351.66 15.07 5.30 5.30 Total: -1.00 -32.99 351.66 -9.53 -42.53 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.73 Total: 1.99 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -0.98 Total: 6.27 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: -0.34 Total: -58.95 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.26 Total: -16.08 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 4.33 SS G_CDS: -2.49 Total: 1.84 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.99 -9.53 -42.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071178017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.063 kcal (2) G-P(sol) polarization free energy of solvation -32.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds