Wall clock time and date at job start Tue Mar 31 2020 20:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.51642 * 2 1 4 4 C 1.53288 * 109.51276 * 120.10501 * 2 1 3 5 5 N 1.47161 * 108.49903 * 172.95282 * 4 2 1 6 6 C 1.34773 * 121.06042 * 128.81214 * 5 4 2 7 7 O 1.21624 * 119.99943 * 3.95738 * 6 5 4 8 8 C 1.47256 * 120.00340 * 183.96740 * 6 5 4 9 9 N 1.30559 * 125.54458 * 136.06879 * 8 6 5 10 10 C 1.30705 * 115.90772 * 179.73719 * 9 8 6 11 11 C 1.34229 * 115.77996 * 0.02562 * 10 9 8 12 12 S 1.71064 * 109.09664 * 359.97438 * 11 10 9 13 13 C 1.47298 * 117.88306 * 309.07482 * 5 4 2 14 14 C 1.52069 * 108.69653 * 48.99791 * 13 5 4 15 15 C 1.54519 * 110.11981 * 187.41863 * 14 13 5 16 16 C 1.55026 * 101.52828 * 207.08444 * 15 14 13 17 17 N 1.47487 * 104.90063 * 36.37467 * 16 15 14 18 18 C 1.36932 * 125.66464 * 155.94763 * 17 16 15 19 19 H 1.07999 * 120.00032 * 152.77659 * 18 17 16 20 20 C 1.38811 * 120.00099 * 332.76742 * 18 17 16 21 21 N 1.31616 * 119.99960 * 157.68707 * 20 18 17 22 22 Si 1.86806 * 120.00204 * 337.69014 * 20 18 17 23 23 H 1.48491 * 109.47037 * 95.26949 * 22 20 18 24 24 H 1.48498 * 109.47060 * 215.27504 * 22 20 18 25 25 H 1.48502 * 109.46614 * 335.26930 * 22 20 18 26 26 C 1.47192 * 108.66720 * 335.97998 * 17 16 15 27 27 O 1.42066 * 111.21763 * 310.04661 * 14 13 5 28 28 H 1.08997 * 109.47212 * 299.89750 * 1 2 3 29 29 H 1.09001 * 109.47495 * 59.89592 * 1 2 3 30 30 H 1.09005 * 109.47643 * 179.89862 * 1 2 3 31 31 H 1.09002 * 109.63277 * 53.24888 * 4 2 1 32 32 H 1.08997 * 109.79550 * 292.75061 * 4 2 1 33 33 H 1.07999 * 122.10672 * 180.02562 * 10 9 8 34 34 H 1.08005 * 125.44818 * 180.02562 * 11 10 9 35 35 H 1.08999 * 109.63530 * 168.75713 * 13 5 4 36 36 H 1.09004 * 109.64045 * 289.37543 * 13 5 4 37 37 H 1.09002 * 111.01204 * 325.14515 * 15 14 13 38 38 H 1.09001 * 111.01805 * 89.02141 * 15 14 13 39 39 H 1.09007 * 110.35073 * 155.22741 * 16 15 14 40 40 H 1.08990 * 110.35430 * 277.40532 * 16 15 14 41 41 H 0.97007 * 120.00137 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.90502 * 242.13578 * 26 17 16 43 43 H 1.09001 * 109.90481 * 120.88656 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0420 -0.7247 1.2499 5 7 3.5034 -0.8615 1.1446 6 6 4.3124 -0.4736 2.1503 7 8 3.8350 -0.0688 3.1931 8 6 5.7743 -0.5395 1.9864 9 7 6.6208 0.3879 2.3443 10 6 7.8814 0.1299 2.1147 11 6 8.1395 -1.0555 1.5403 12 16 6.6659 -1.8852 1.2826 13 6 4.0542 -1.4306 -0.0974 14 6 3.4241 -0.7157 -1.2825 15 6 3.8357 -1.4083 -2.6010 16 6 3.7422 -0.2347 -3.6097 17 7 4.2020 0.9484 -2.8587 18 6 4.7290 2.0870 -3.4072 19 1 4.6341 3.0299 -2.8892 20 6 5.3854 2.0294 -4.6289 21 7 5.5032 3.1144 -5.3645 22 14 6.1014 0.4118 -5.2292 23 1 5.1274 -0.2572 -6.1286 24 1 7.3614 0.6730 -5.9705 25 1 6.3846 -0.4662 -4.0655 26 6 4.0011 0.7015 -1.4216 27 8 2.0088 -0.6769 -1.1662 28 1 -0.3633 0.5122 0.8909 29 1 -0.3634 0.5154 -0.8890 30 1 -0.3634 -1.0277 -0.0018 31 1 1.5853 -1.7124 1.3135 32 1 1.7914 -0.1475 2.1399 33 1 8.6658 0.8266 2.3710 34 1 9.1206 -1.4264 1.2828 35 1 5.1348 -1.2886 -0.1176 36 1 3.8204 -2.4940 -0.1484 37 1 4.8545 -1.7910 -2.5400 38 1 3.1362 -2.2030 -2.8601 39 1 4.3928 -0.4172 -4.4650 40 1 2.7123 -0.0996 -3.9397 41 1 5.9616 3.0741 -6.2185 42 1 3.2995 1.4296 -1.0145 43 1 4.9543 0.7675 -0.8969 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071223867.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:47 Heat of formation + Delta-G solvation = 26.814937 kcal Electronic energy + Delta-G solvation = -28587.400307 eV Core-core repulsion = 24761.717653 eV Total energy + Delta-G solvation = -3825.682653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.97785 -39.86063 -38.70441 -36.62675 -35.03370 -33.30100 -31.79790 -30.82088 -29.84002 -28.77750 -27.70238 -26.42895 -25.37596 -23.73044 -22.35399 -21.45301 -20.90247 -19.84552 -19.13068 -18.62360 -17.27425 -17.08860 -16.85366 -16.29208 -15.79187 -15.60491 -15.36807 -14.81144 -14.48339 -14.13975 -14.06443 -13.91057 -13.63017 -13.49138 -13.05902 -12.95916 -12.64988 -12.39612 -12.34610 -12.06704 -11.73281 -11.59955 -11.47721 -11.34087 -11.09961 -10.95960 -10.82726 -10.63098 -10.43798 -9.95700 -9.87598 -9.85231 -9.78461 -9.45943 -9.03748 -8.65539 -8.59030 -7.00392 -6.01089 -3.35010 0.10176 0.85929 1.37615 2.16394 2.38467 2.94783 3.27216 3.39656 3.44253 3.60189 3.87056 4.45073 4.49208 4.59452 4.68832 4.78653 4.88216 4.89278 4.98722 5.09406 5.13245 5.17890 5.18373 5.34730 5.38746 5.43654 5.56596 5.60817 5.79208 5.80244 5.88464 5.96052 6.01223 6.07318 6.15502 6.27725 6.38108 6.52611 6.77914 6.90293 7.36573 7.37640 7.73938 7.74753 8.28012 8.79962 9.63150 10.15527 11.15378 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.010030 B = 0.005608 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.937149 B = 4991.416324 C = 6692.337659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.067 3.933 3 H 0.073 0.927 4 C 0.088 3.912 5 N -0.601 5.601 6 C 0.606 3.394 7 O -0.505 6.505 8 C -0.003 4.003 9 N -0.401 5.401 10 C 0.032 3.968 11 C -0.269 4.269 12 S 0.189 5.811 13 C 0.078 3.922 14 C 0.096 3.904 15 C -0.120 4.120 16 C 0.125 3.875 17 N -0.604 5.604 18 C -0.245 4.245 19 H 0.086 0.914 20 C 0.028 3.972 21 N -0.902 5.902 22 Si 0.885 3.115 23 H -0.285 1.285 24 H -0.302 1.302 25 H -0.273 1.273 26 C 0.119 3.881 27 O -0.351 6.351 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.182 0.818 34 H 0.186 0.814 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.042 0.958 40 H 0.040 0.960 41 H 0.264 0.736 42 H 0.038 0.962 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.609 -14.615 13.257 19.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.009 3.991 3 H 0.091 0.909 4 C -0.033 4.033 5 N -0.335 5.335 6 C 0.389 3.611 7 O -0.380 6.380 8 C -0.279 4.279 9 N -0.117 5.117 10 C -0.124 4.124 11 C -0.409 4.409 12 S 0.443 5.557 13 C -0.046 4.046 14 C 0.055 3.945 15 C -0.159 4.159 16 C 0.001 3.999 17 N -0.331 5.331 18 C -0.373 4.373 19 H 0.104 0.896 20 C -0.172 4.172 21 N -0.545 5.545 22 Si 0.717 3.283 23 H -0.214 1.214 24 H -0.231 1.231 25 H -0.199 1.199 26 C -0.006 4.006 27 O -0.270 6.270 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.122 0.878 33 H 0.199 0.801 34 H 0.203 0.797 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.373 -14.775 13.365 20.064 hybrid contribution 1.746 -0.070 -0.176 1.756 sum -0.627 -14.845 13.189 19.868 Atomic orbital electron populations 1.21680 0.91892 1.03011 1.03092 1.22539 0.95630 0.96533 0.84383 0.90902 1.22486 0.77890 1.02440 1.00520 1.47947 1.07215 1.62389 1.15953 1.16662 0.82977 0.77810 0.83678 1.90833 1.74888 1.45479 1.26750 1.27345 0.98743 0.95403 1.06442 1.66640 1.01711 1.28025 1.15310 1.21847 0.92765 0.96657 1.01139 1.26863 1.05111 1.00692 1.08233 1.83962 0.96956 1.21822 1.52995 1.22677 0.99900 0.98668 0.83368 1.22093 0.81627 0.96739 0.94027 1.22776 1.01357 0.98624 0.93139 1.21860 0.98066 0.86162 0.93845 1.44635 1.72944 1.16243 0.99319 1.18558 1.29760 0.85019 1.03913 0.89639 1.25171 0.98422 0.96600 0.96969 1.69845 1.44305 1.28358 1.11971 0.86778 0.78361 0.85083 0.78119 1.21353 1.23080 1.19862 1.21857 0.97701 0.92759 0.88321 1.87858 1.19531 1.76912 1.42734 0.90851 0.91001 0.91684 0.90038 0.87764 0.80117 0.79660 0.88654 0.89374 0.89884 0.89707 0.93992 0.94165 0.92619 0.94382 0.94959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.57 37.16 0.36 -1.05 16 2 C 0.07 0.88 3.17 -26.58 -0.08 0.80 16 3 H 0.07 1.10 6.24 -51.93 -0.32 0.78 16 4 C 0.09 1.05 5.90 -3.53 -0.02 1.03 16 5 N -0.60 -8.18 2.96 -174.23 -0.51 -8.69 16 6 C 0.61 9.40 7.69 -12.60 -0.10 9.30 16 7 O -0.51 -9.07 16.59 5.26 0.09 -8.99 16 8 C 0.00 -0.04 6.53 -14.43 -0.09 -0.13 16 9 N -0.40 -6.23 10.65 -11.51 -0.12 -6.35 16 10 C 0.03 0.38 11.24 -19.44 -0.22 0.16 16 11 C -0.27 -2.68 11.09 29.32 0.33 -2.36 16 12 S 0.19 2.01 20.05 -107.50 -2.16 -0.14 16 13 C 0.08 1.02 4.52 -4.08 -0.02 1.00 16 14 C 0.10 1.54 0.80 -89.96 -0.07 1.47 16 15 C -0.12 -1.96 6.21 -24.86 -0.15 -2.11 16 16 C 0.13 2.68 6.22 -2.43 -0.02 2.66 16 17 N -0.60 -14.69 3.08 -170.23 -0.52 -15.21 16 18 C -0.25 -7.02 10.52 -15.06 -0.16 -7.18 16 19 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 20 C 0.03 0.82 5.43 -17.43 -0.09 0.72 16 21 N -0.90 -27.74 13.97 55.49 0.78 -26.96 16 22 Si 0.88 22.09 24.71 -169.99 -4.20 17.89 16 23 H -0.29 -6.93 6.86 56.52 0.39 -6.54 16 24 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 25 H -0.27 -6.45 7.02 56.52 0.40 -6.06 16 26 C 0.12 2.43 6.34 -3.32 -0.02 2.41 16 27 O -0.35 -5.42 9.90 -35.23 -0.35 -5.77 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.10 1.24 7.10 -51.93 -0.37 0.87 16 33 H 0.18 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.19 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.10 1.27 3.99 -33.34 -0.13 1.14 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 1.26 8.01 -51.93 -0.42 0.84 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.04 0.96 2.70 -51.93 -0.14 0.82 16 40 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 42 H 0.04 0.81 6.03 -51.93 -0.31 0.50 16 43 H 0.03 0.68 7.59 -51.93 -0.39 0.29 16 LS Contribution 349.27 15.07 5.26 5.26 Total: -1.00 -34.93 349.27 -7.58 -42.51 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -5.47 Total: -0.27 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -0.37 Total: 6.72 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.39 Total: -57.22 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.26 Total: -14.75 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.20 Total: 17.89 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.16 Total: -0.14 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.93 -7.58 -42.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071223867.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.321 kcal (2) G-P(sol) polarization free energy of solvation -34.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds