Wall clock time and date at job start Tue Mar 31 2020 20:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.51642 * 2 1 4 4 C 1.53288 * 109.51276 * 120.10501 * 2 1 3 5 5 N 1.47161 * 108.49903 * 172.95282 * 4 2 1 6 6 C 1.34773 * 121.06042 * 128.81214 * 5 4 2 7 7 O 1.21624 * 119.99943 * 3.95738 * 6 5 4 8 8 C 1.47256 * 120.00340 * 183.96740 * 6 5 4 9 9 N 1.30559 * 125.54458 * 136.06879 * 8 6 5 10 10 C 1.30705 * 115.90772 * 179.73719 * 9 8 6 11 11 C 1.34229 * 115.77996 * 0.02562 * 10 9 8 12 12 S 1.71064 * 109.09664 * 359.97438 * 11 10 9 13 13 C 1.47298 * 117.88306 * 309.07482 * 5 4 2 14 14 C 1.52069 * 108.69653 * 48.99791 * 13 5 4 15 15 C 1.54519 * 110.11981 * 187.41863 * 14 13 5 16 16 C 1.55026 * 101.52828 * 207.08444 * 15 14 13 17 17 N 1.47487 * 104.90063 * 36.37467 * 16 15 14 18 18 C 1.36932 * 125.66464 * 155.94763 * 17 16 15 19 19 H 1.07999 * 120.00032 * 152.77659 * 18 17 16 20 20 C 1.38811 * 120.00099 * 332.76742 * 18 17 16 21 21 N 1.31616 * 119.99960 * 157.68707 * 20 18 17 22 22 Si 1.86806 * 120.00204 * 337.69014 * 20 18 17 23 23 H 1.48491 * 109.47037 * 95.26949 * 22 20 18 24 24 H 1.48498 * 109.47060 * 215.27504 * 22 20 18 25 25 H 1.48502 * 109.46614 * 335.26930 * 22 20 18 26 26 C 1.47192 * 108.66720 * 335.97998 * 17 16 15 27 27 O 1.42066 * 111.21763 * 310.04661 * 14 13 5 28 28 H 1.08997 * 109.47212 * 299.89750 * 1 2 3 29 29 H 1.09001 * 109.47495 * 59.89592 * 1 2 3 30 30 H 1.09005 * 109.47643 * 179.89862 * 1 2 3 31 31 H 1.09002 * 109.63277 * 53.24888 * 4 2 1 32 32 H 1.08997 * 109.79550 * 292.75061 * 4 2 1 33 33 H 1.07999 * 122.10672 * 180.02562 * 10 9 8 34 34 H 1.08005 * 125.44818 * 180.02562 * 11 10 9 35 35 H 1.08999 * 109.63530 * 168.75713 * 13 5 4 36 36 H 1.09004 * 109.64045 * 289.37543 * 13 5 4 37 37 H 1.09002 * 111.01204 * 325.14515 * 15 14 13 38 38 H 1.09001 * 111.01805 * 89.02141 * 15 14 13 39 39 H 1.09007 * 110.35073 * 155.22741 * 16 15 14 40 40 H 1.08990 * 110.35430 * 277.40532 * 16 15 14 41 41 H 0.97007 * 120.00137 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.90502 * 242.13578 * 26 17 16 43 43 H 1.09001 * 109.90481 * 120.88656 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0420 -0.7247 1.2499 5 7 3.5034 -0.8615 1.1446 6 6 4.3124 -0.4736 2.1503 7 8 3.8350 -0.0688 3.1931 8 6 5.7743 -0.5395 1.9864 9 7 6.6208 0.3879 2.3443 10 6 7.8814 0.1299 2.1147 11 6 8.1395 -1.0555 1.5403 12 16 6.6659 -1.8852 1.2826 13 6 4.0542 -1.4306 -0.0974 14 6 3.4241 -0.7157 -1.2825 15 6 3.8357 -1.4083 -2.6010 16 6 3.7422 -0.2347 -3.6097 17 7 4.2020 0.9484 -2.8587 18 6 4.7290 2.0870 -3.4072 19 1 4.6341 3.0299 -2.8892 20 6 5.3854 2.0294 -4.6289 21 7 5.5032 3.1144 -5.3645 22 14 6.1014 0.4118 -5.2292 23 1 5.1274 -0.2572 -6.1286 24 1 7.3614 0.6730 -5.9705 25 1 6.3846 -0.4662 -4.0655 26 6 4.0011 0.7015 -1.4216 27 8 2.0088 -0.6769 -1.1662 28 1 -0.3633 0.5122 0.8909 29 1 -0.3634 0.5154 -0.8890 30 1 -0.3634 -1.0277 -0.0018 31 1 1.5853 -1.7124 1.3135 32 1 1.7914 -0.1475 2.1399 33 1 8.6658 0.8266 2.3710 34 1 9.1206 -1.4264 1.2828 35 1 5.1348 -1.2886 -0.1176 36 1 3.8204 -2.4940 -0.1484 37 1 4.8545 -1.7910 -2.5400 38 1 3.1362 -2.2030 -2.8601 39 1 4.3928 -0.4172 -4.4650 40 1 2.7123 -0.0996 -3.9397 41 1 5.9616 3.0741 -6.2185 42 1 3.2995 1.4296 -1.0145 43 1 4.9543 0.7675 -0.8969 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071223867.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:47 Heat of formation + Delta-G solvation = 0.048247 kcal Electronic energy + Delta-G solvation = -28588.560997 eV Core-core repulsion = 24761.717653 eV Total energy + Delta-G solvation = -3826.843344 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.12141 -40.90168 -39.87296 -38.10157 -36.15841 -34.93616 -33.48443 -31.80889 -31.27593 -30.20798 -28.65499 -27.97837 -26.40892 -25.32067 -23.45501 -22.85665 -22.26547 -20.97015 -20.20359 -19.71737 -19.09561 -18.15895 -18.10248 -17.57554 -17.43165 -16.63486 -16.51678 -15.97957 -15.61195 -15.52126 -15.34930 -15.20914 -15.06997 -14.69137 -14.48942 -14.23124 -14.08188 -13.72071 -13.41067 -13.22763 -13.13203 -12.97590 -12.77823 -12.58239 -12.48499 -12.40235 -12.23248 -11.97020 -11.89780 -11.60278 -11.33899 -11.10274 -10.85655 -10.71244 -10.70695 -9.94031 -9.73458 -9.02977 -8.25041 -5.57835 -0.81054 -0.03895 0.53114 1.10055 1.28097 1.37888 1.42423 1.50704 1.94530 2.38565 2.46327 2.89201 2.93815 3.17574 3.48853 3.56343 3.61418 3.72121 3.80746 3.98423 3.99782 4.18842 4.24396 4.28442 4.31129 4.39001 4.41096 4.55649 4.59756 4.67552 4.70382 4.84128 4.90949 4.95603 4.97105 5.01810 5.06686 5.20225 5.30082 5.66442 5.83303 6.04566 6.17514 6.47856 6.66820 6.70380 7.45015 8.05212 8.95729 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.010030 B = 0.005608 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.937149 B = 4991.416324 C = 6692.337659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.065 3.935 3 H 0.038 0.962 4 C 0.091 3.909 5 N -0.599 5.599 6 C 0.602 3.398 7 O -0.545 6.545 8 C -0.054 4.054 9 N -0.444 5.444 10 C 0.005 3.995 11 C -0.254 4.254 12 S 0.260 5.740 13 C 0.082 3.918 14 C 0.106 3.894 15 C -0.108 4.108 16 C 0.113 3.887 17 N -0.621 5.621 18 C -0.251 4.251 19 H 0.036 0.964 20 C -0.032 4.032 21 N -0.953 5.953 22 Si 0.958 3.042 23 H -0.271 1.271 24 H -0.307 1.307 25 H -0.245 1.245 26 C 0.119 3.881 27 O -0.357 6.357 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.115 0.885 32 H 0.100 0.900 33 H 0.199 0.801 34 H 0.225 0.775 35 H 0.094 0.906 36 H 0.133 0.867 37 H 0.104 0.896 38 H 0.124 0.876 39 H 0.034 0.966 40 H 0.032 0.968 41 H 0.266 0.734 42 H 0.015 0.985 43 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.068 -19.590 13.273 23.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.006 3.994 3 H 0.056 0.944 4 C -0.031 4.031 5 N -0.332 5.332 6 C 0.386 3.614 7 O -0.422 6.422 8 C -0.328 4.328 9 N -0.161 5.161 10 C -0.150 4.150 11 C -0.394 4.394 12 S 0.514 5.486 13 C -0.042 4.042 14 C 0.065 3.935 15 C -0.146 4.146 16 C -0.010 4.010 17 N -0.348 5.348 18 C -0.380 4.380 19 H 0.054 0.946 20 C -0.227 4.227 21 N -0.598 5.598 22 Si 0.786 3.214 23 H -0.198 1.198 24 H -0.235 1.235 25 H -0.169 1.169 26 C -0.007 4.007 27 O -0.276 6.276 28 H 0.110 0.890 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.133 0.867 32 H 0.118 0.882 33 H 0.216 0.784 34 H 0.241 0.759 35 H 0.112 0.888 36 H 0.151 0.849 37 H 0.123 0.877 38 H 0.142 0.858 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.074 0.926 42 H 0.033 0.967 43 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -1.875 -19.788 13.391 23.966 hybrid contribution 1.549 1.618 -0.182 2.248 sum -0.325 -18.170 13.209 22.466 Atomic orbital electron populations 1.21683 0.89417 1.04471 1.03408 1.22666 0.97489 0.94762 0.84437 0.94362 1.22584 0.77187 1.03916 0.99362 1.48039 1.07752 1.61771 1.15641 1.16938 0.83800 0.77136 0.83514 1.90789 1.75849 1.47293 1.28314 1.27220 0.98520 0.97740 1.09333 1.66607 1.03286 1.29820 1.16432 1.22201 0.92181 0.98253 1.02367 1.27418 1.06802 0.99532 1.05640 1.83531 0.95697 1.18755 1.50606 1.22764 0.99570 1.00384 0.81453 1.21957 0.82122 0.93620 0.95827 1.22822 1.03860 0.97213 0.90680 1.22055 0.97109 0.86966 0.94904 1.44696 1.72695 1.16026 1.01395 1.18374 1.30256 0.85333 1.03990 0.94635 1.25940 0.98725 1.00982 0.97088 1.69998 1.45685 1.31368 1.12729 0.85620 0.77046 0.80253 0.78463 1.19777 1.23545 1.16891 1.21931 0.96944 0.95926 0.85877 1.87851 1.18983 1.76798 1.43952 0.89017 0.92281 0.89549 0.86716 0.88215 0.78406 0.75860 0.88787 0.84894 0.87727 0.85823 0.94864 0.94965 0.92555 0.96672 0.96063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 9.57 71.98 0.69 -1.76 16 2 C 0.06 1.63 3.17 30.69 0.10 1.73 16 3 H 0.04 1.23 6.24 -2.39 -0.01 1.21 16 4 C 0.09 1.99 5.90 86.35 0.51 2.50 16 5 N -0.60 -15.34 2.96 -823.38 -2.43 -17.77 16 6 C 0.60 18.61 7.69 86.61 0.67 19.28 16 7 O -0.55 -20.16 16.59 -4.11 -0.07 -20.22 16 8 C -0.05 -1.55 6.53 87.25 0.57 -0.98 16 9 N -0.44 -13.94 10.65 -190.31 -2.03 -15.97 16 10 C 0.01 0.12 11.24 83.94 0.94 1.07 16 11 C -0.25 -4.24 11.09 66.90 0.74 -3.49 16 12 S 0.26 4.67 20.05 -56.49 -1.13 3.54 16 13 C 0.08 1.84 4.52 85.92 0.39 2.23 16 14 C 0.11 3.13 0.80 -10.36 -0.01 3.13 16 15 C -0.11 -3.01 6.21 31.80 0.20 -2.81 16 16 C 0.11 4.62 6.22 86.88 0.54 5.16 16 17 N -0.62 -30.57 3.08 -692.49 -2.13 -32.70 16 18 C -0.25 -15.06 10.52 84.03 0.88 -14.17 16 19 H 0.04 2.40 8.06 -2.91 -0.02 2.38 16 20 C -0.03 -1.89 5.43 84.86 0.46 -1.43 16 21 N -0.95 -60.91 13.97 21.65 0.30 -60.61 16 22 Si 0.96 45.31 24.71 68.60 1.70 47.01 16 23 H -0.27 -12.09 6.86 99.48 0.68 -11.41 16 24 H -0.31 -14.62 7.11 99.48 0.71 -13.91 16 25 H -0.25 -10.36 7.02 99.48 0.70 -9.66 16 26 C 0.12 4.90 6.34 86.47 0.55 5.45 16 27 O -0.36 -10.20 9.90 -148.97 -1.47 -11.68 16 28 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.10 2.31 7.10 -2.39 -0.02 2.30 16 33 H 0.20 3.48 8.06 -2.91 -0.02 3.46 16 34 H 0.22 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.09 2.17 3.99 -14.21 -0.06 2.12 16 36 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.10 2.53 8.01 -2.39 -0.02 2.51 16 38 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.03 1.43 2.70 -2.38 -0.01 1.42 16 40 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.27 15.90 8.31 -92.70 -0.77 15.12 16 42 H 0.02 0.70 6.03 -2.39 -0.01 0.68 16 43 H 0.02 0.92 7.59 -2.39 -0.02 0.91 16 Total: -1.00 -83.07 349.27 0.92 -82.15 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 0.96 Total: 10.36 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 7.23 Total: 15.90 kcal Atomic # 7 Polarization: -120.76 SS G_CDS: -6.29 Total: -127.05 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -1.54 Total: -31.90 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.70 Total: 47.01 kcal Atomic # 16 Polarization: 4.67 SS G_CDS: -1.13 Total: 3.54 kcal Total: -83.07 0.92 -82.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071223867.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.195 kcal (2) G-P(sol) polarization free energy of solvation -83.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds