Wall clock time and date at job start Tue Mar 31 2020 20:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.51371 * 2 1 4 4 C 1.53279 * 109.51255 * 120.09419 * 2 1 3 5 5 N 1.47158 * 108.55849 * 172.83948 * 4 2 1 6 6 C 1.34775 * 121.06242 * 128.88586 * 5 4 2 7 7 O 1.21624 * 119.99958 * 353.35873 * 6 5 4 8 8 C 1.47256 * 120.00639 * 173.35754 * 6 5 4 9 9 N 1.30562 * 125.53424 * 352.39253 * 8 6 5 10 10 C 1.30705 * 115.90362 * 179.81747 * 9 8 6 11 11 C 1.34238 * 115.78163 * 0.47608 * 10 9 8 12 12 S 1.71069 * 109.09304 * 359.74541 * 11 10 9 13 13 C 1.47309 * 117.87868 * 308.91049 * 5 4 2 14 14 C 1.52515 * 108.38420 * 49.39743 * 13 5 4 15 15 C 1.54518 * 110.04713 * 72.01206 * 14 13 5 16 16 C 1.55024 * 101.51997 * 153.10491 * 15 14 13 17 17 N 1.47481 * 104.90076 * 323.62084 * 16 15 14 18 18 C 1.36939 * 125.66519 * 203.98576 * 17 16 15 19 19 H 1.08000 * 119.99963 * 180.02562 * 18 17 16 20 20 C 1.38816 * 119.99586 * 0.02562 * 18 17 16 21 21 N 1.31614 * 120.00372 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99720 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47254 * 180.02562 * 22 20 18 24 24 H 1.48502 * 109.47122 * 299.99701 * 22 20 18 25 25 H 1.48495 * 109.47620 * 59.99662 * 22 20 18 26 26 C 1.47188 * 108.67467 * 24.24835 * 17 16 15 27 27 O 1.42071 * 111.09952 * 309.51610 * 14 13 5 28 28 H 1.09005 * 109.46797 * 299.90492 * 1 2 3 29 29 H 1.09002 * 109.47069 * 59.90512 * 1 2 3 30 30 H 1.09000 * 109.47090 * 179.90628 * 1 2 3 31 31 H 1.09004 * 109.62079 * 53.12294 * 4 2 1 32 32 H 1.09005 * 109.77730 * 292.65926 * 4 2 1 33 33 H 1.07995 * 122.11137 * 180.22290 * 10 9 8 34 34 H 1.07999 * 125.45423 * 179.75033 * 11 10 9 35 35 H 1.09006 * 109.68032 * 289.67330 * 13 5 4 36 36 H 1.09004 * 109.70912 * 169.14003 * 13 5 4 37 37 H 1.08999 * 111.01698 * 35.04955 * 15 14 13 38 38 H 1.08991 * 111.01224 * 271.16591 * 15 14 13 39 39 H 1.08997 * 110.35416 * 204.76238 * 16 15 14 40 40 H 1.09005 * 110.35257 * 82.47703 * 16 15 14 41 41 H 0.97001 * 120.00593 * 180.02562 * 21 20 18 42 42 H 1.08999 * 109.90998 * 117.62731 * 26 17 16 43 43 H 1.08998 * 109.91101 * 238.90117 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7244 1.2500 5 7 3.5031 -0.8644 1.1448 6 6 4.3129 -0.4785 2.1506 7 8 3.8514 0.1037 3.1136 8 6 5.7564 -0.7618 2.0839 9 7 6.3445 -1.4962 1.1786 10 6 7.6403 -1.6199 1.2973 11 6 8.1945 -0.9831 2.3410 12 16 6.9690 -0.1714 3.2161 13 6 4.0524 -1.4393 -0.0953 14 6 3.4245 -0.7142 -1.2810 15 6 3.9925 0.7189 -1.3868 16 6 3.8345 1.0035 -2.9025 17 7 4.1128 -0.2861 -3.5616 18 6 4.5437 -0.4470 -4.8514 19 1 4.7194 -1.4383 -5.2424 20 6 4.7548 0.6641 -5.6563 21 7 4.5403 1.8722 -5.1799 22 14 5.3419 0.4447 -7.4159 23 1 5.4898 1.7755 -8.0580 24 1 6.6527 -0.2532 -7.4171 25 1 4.3507 -0.3625 -8.1716 26 6 3.8446 -1.3720 -2.6048 27 8 2.0089 -0.6768 -1.1663 28 1 -0.3633 0.5124 0.8909 29 1 -0.3633 0.5153 -0.8891 30 1 -0.3633 -1.0277 -0.0017 31 1 1.5835 -1.7112 1.3147 32 1 1.7927 -0.1460 2.1396 33 1 8.2275 -2.2013 0.6020 34 1 9.2457 -0.9831 2.5885 35 1 3.8123 -2.5014 -0.1454 36 1 5.1341 -1.3062 -0.1145 37 1 5.0413 0.7465 -1.0913 38 1 3.4025 1.4179 -0.7942 39 1 4.5539 1.7566 -3.2239 40 1 2.8182 1.3304 -3.1229 41 1 4.6874 2.6486 -5.7424 42 1 3.0401 -2.0055 -2.9783 43 1 4.7469 -1.9642 -2.4529 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071223869.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:53 Heat of formation + Delta-G solvation = 27.222666 kcal Electronic energy + Delta-G solvation = -28287.787488 eV Core-core repulsion = 24462.122516 eV Total energy + Delta-G solvation = -3825.664973 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.87988 -39.67047 -38.63237 -36.23067 -34.75671 -33.08310 -31.47662 -30.78516 -29.25197 -28.42459 -27.33032 -25.95073 -25.26848 -23.64794 -22.19036 -21.53007 -20.19908 -19.73482 -19.18813 -18.22426 -17.02596 -16.95162 -16.54389 -15.91326 -15.60942 -15.52511 -14.83570 -14.58959 -14.31476 -14.11915 -13.94644 -13.68030 -13.31178 -13.22699 -12.94715 -12.54319 -12.30790 -12.18734 -12.01145 -11.69484 -11.60400 -11.50968 -11.01574 -10.92736 -10.84233 -10.58350 -10.54458 -10.26422 -10.08442 -9.99053 -9.94379 -9.59989 -9.51404 -9.42643 -9.17290 -8.61929 -8.35594 -6.80619 -5.61872 -3.03490 0.00834 0.88563 1.45380 2.13828 2.84593 3.01354 3.42563 3.46514 3.48032 3.80159 3.92893 4.50623 4.61067 4.79575 4.84838 5.05627 5.09668 5.11776 5.14937 5.30966 5.45749 5.51415 5.53828 5.60987 5.67286 5.72857 5.83698 5.90518 6.03476 6.09889 6.22029 6.25658 6.45442 6.53147 6.54848 6.64886 6.73327 7.13605 7.26985 7.56953 7.63752 7.70558 7.87703 7.88222 8.37731 9.24488 9.85096 10.50541 11.42140 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.011613 B = 0.004177 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.436069 B = 6702.243598 C = 8439.487429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.070 3.930 3 H 0.067 0.933 4 C 0.084 3.916 5 N -0.583 5.583 6 C 0.600 3.400 7 O -0.536 6.536 8 C -0.015 4.015 9 N -0.416 5.416 10 C 0.030 3.970 11 C -0.279 4.279 12 S 0.247 5.753 13 C 0.071 3.929 14 C 0.095 3.905 15 C -0.166 4.166 16 C 0.161 3.839 17 N -0.601 5.601 18 C -0.220 4.220 19 H 0.078 0.922 20 C -0.011 4.011 21 N -0.923 5.923 22 Si 0.915 3.085 23 H -0.290 1.290 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.155 3.845 27 O -0.354 6.354 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.181 0.819 34 H 0.185 0.815 35 H 0.073 0.927 36 H 0.141 0.859 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.105 0.895 40 H 0.014 0.986 41 H 0.252 0.748 42 H 0.036 0.964 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.346 -5.432 18.128 19.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.011 3.989 3 H 0.085 0.915 4 C -0.039 4.039 5 N -0.314 5.314 6 C 0.384 3.616 7 O -0.414 6.414 8 C -0.289 4.289 9 N -0.135 5.135 10 C -0.126 4.126 11 C -0.420 4.420 12 S 0.501 5.499 13 C -0.051 4.051 14 C 0.054 3.946 15 C -0.205 4.205 16 C 0.036 3.964 17 N -0.327 5.327 18 C -0.349 4.349 19 H 0.096 0.904 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.745 3.255 23 H -0.216 1.216 24 H -0.212 1.212 25 H -0.212 1.212 26 C 0.029 3.971 27 O -0.273 6.273 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.198 0.802 34 H 0.202 0.798 35 H 0.091 0.909 36 H 0.158 0.842 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.123 0.877 40 H 0.032 0.968 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.663 -4.678 18.818 19.462 hybrid contribution 1.082 -0.633 -1.488 1.946 sum 2.745 -5.311 17.330 18.332 Atomic orbital electron populations 1.21687 0.92350 1.02975 1.02760 1.22450 0.95351 0.96183 0.84897 0.91479 1.22493 0.78780 1.02212 1.00409 1.47915 1.06604 1.60495 1.16402 1.16716 0.82882 0.79034 0.82931 1.90827 1.75258 1.42098 1.33173 1.27664 0.99477 1.03991 0.97812 1.66854 1.09540 1.14781 1.22290 1.21889 0.89599 1.02180 0.98947 1.26910 1.06648 1.06258 1.02218 1.83992 0.95827 1.43785 1.26259 1.23197 1.03222 0.97362 0.81368 1.22347 0.80698 0.96587 0.94943 1.23496 0.99804 0.95221 1.01934 1.21873 0.99923 0.90061 0.84515 1.44493 1.78166 1.00381 1.09688 1.19027 1.36646 0.93039 0.86159 0.90429 1.24773 1.02070 0.95228 0.98558 1.69793 1.55222 0.97017 1.35113 0.86146 0.78550 0.76588 0.84167 1.21627 1.21191 1.21205 1.21039 0.97312 0.91961 0.86810 1.87909 1.20645 1.76682 1.42075 0.91132 0.91124 0.91744 0.90338 0.88157 0.80192 0.79786 0.90872 0.84173 0.91784 0.92135 0.87717 0.96783 0.93730 0.94584 0.94208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.57 37.16 0.36 -1.28 16 2 C 0.07 1.02 3.17 -26.59 -0.08 0.94 16 3 H 0.07 1.06 6.13 -51.93 -0.32 0.74 16 4 C 0.08 1.12 5.93 -3.54 -0.02 1.10 16 5 N -0.58 -8.74 2.91 -173.95 -0.51 -9.25 16 6 C 0.60 9.18 7.69 -12.60 -0.10 9.08 16 7 O -0.54 -8.94 16.42 5.26 0.09 -8.86 16 8 C -0.02 -0.21 7.18 -14.43 -0.10 -0.31 16 9 N -0.42 -5.50 7.07 -11.50 -0.08 -5.58 16 10 C 0.03 0.31 11.24 -19.44 -0.22 0.09 16 11 C -0.28 -2.37 11.09 29.32 0.33 -2.05 16 12 S 0.25 2.50 23.04 -107.50 -2.48 0.02 16 13 C 0.07 1.12 4.73 -3.85 -0.02 1.11 16 14 C 0.09 1.77 0.83 -89.72 -0.07 1.69 16 15 C -0.17 -3.36 5.91 -24.87 -0.15 -3.50 16 16 C 0.16 4.06 5.88 -2.44 -0.01 4.04 16 17 N -0.60 -15.68 3.40 -170.22 -0.58 -16.26 16 18 C -0.22 -6.19 10.28 -15.06 -0.15 -6.34 16 19 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 20 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 21 N -0.92 -27.18 10.09 55.49 0.56 -26.62 16 22 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 C 0.16 3.34 6.62 -3.32 -0.02 3.32 16 27 O -0.35 -6.50 9.86 -35.23 -0.35 -6.85 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.10 1.28 7.06 -51.93 -0.37 0.91 16 33 H 0.18 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.18 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.14 2.26 4.24 -53.66 -0.23 2.04 16 37 H 0.06 1.29 7.86 -51.93 -0.41 0.88 16 38 H 0.06 1.16 5.97 -51.93 -0.31 0.85 16 39 H 0.11 2.94 5.88 -51.93 -0.31 2.63 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 43 H 0.04 0.81 7.79 -51.93 -0.40 0.41 16 LS Contribution 353.38 15.07 5.33 5.33 Total: -1.00 -32.74 353.38 -9.10 -41.84 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.69 Total: 1.62 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -0.37 Total: 7.48 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.61 Total: -57.70 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.26 Total: -15.71 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.48 Total: 0.02 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.74 -9.10 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071223869.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.060 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds