Wall clock time and date at job start Tue Mar 31 2020 20:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.77520 * 2 1 4 4 C 1.54320 * 110.71962 * 123.23703 * 2 1 3 5 5 N 1.47029 * 107.27041 * 140.55838 * 4 2 1 6 6 C 1.34773 * 125.64772 * 181.02382 * 5 4 2 7 7 O 1.21696 * 120.00356 * 358.14950 * 6 5 4 8 8 C 1.46682 * 119.99671 * 178.15251 * 6 5 4 9 9 C 1.37867 * 126.22928 * 188.04887 * 8 6 5 10 10 C 1.39835 * 107.08582 * 180.02562 * 9 8 6 11 11 C 1.35455 * 107.86414 * 359.97438 * 10 9 8 12 12 N 1.35535 * 108.87059 * 359.73538 * 11 10 9 13 13 H 0.96998 * 125.67980 * 180.30022 * 12 11 10 14 14 C 1.47425 * 108.69971 * 1.06007 * 5 4 2 15 15 C 1.54905 * 104.83435 * 335.87164 * 14 5 4 16 16 H 1.08998 * 111.00722 * 155.09014 * 15 14 5 17 17 N 1.46505 * 111.00582 * 278.93707 * 15 14 5 18 18 C 1.34772 * 120.00319 * 273.54851 * 17 15 14 19 19 O 1.21288 * 119.99542 * 359.97438 * 18 17 15 20 20 C 1.50703 * 120.00500 * 179.97438 * 18 17 15 21 21 S 1.80997 * 109.47233 * 180.02562 * 20 18 17 22 22 C 1.76193 * 99.99885 * 180.02562 * 21 20 18 23 23 H 1.08006 * 120.00260 * 359.97438 * 22 21 20 24 24 C 1.38804 * 120.00074 * 179.97438 * 22 21 20 25 25 N 1.31625 * 120.00004 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99960 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47095 * 90.00391 * 26 24 22 28 28 H 1.48497 * 109.46962 * 209.99951 * 26 24 22 29 29 H 1.48490 * 109.47204 * 330.00118 * 26 24 22 30 30 H 1.09000 * 109.47176 * 183.23753 * 1 2 3 31 31 H 1.09002 * 109.47508 * 303.23692 * 1 2 3 32 32 H 1.08998 * 109.47686 * 63.23778 * 1 2 3 33 33 H 1.09002 * 109.88695 * 21.13903 * 4 2 1 34 34 H 1.09006 * 109.88615 * 259.97365 * 4 2 1 35 35 H 1.08007 * 126.46228 * 0.03764 * 9 8 6 36 36 H 1.08005 * 126.07267 * 179.97438 * 10 9 8 37 37 H 1.07997 * 125.56719 * 179.97438 * 11 10 9 38 38 H 1.08996 * 110.36510 * 217.03355 * 14 5 4 39 39 H 1.09002 * 110.36708 * 94.70827 * 14 5 4 40 40 H 0.97003 * 120.00219 * 93.54217 * 17 15 14 41 41 H 1.09002 * 109.46878 * 300.00192 * 20 18 17 42 42 H 1.08999 * 109.46759 * 59.99592 * 20 18 17 43 43 H 0.97004 * 120.00185 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9166 1.0192 0.0000 4 6 2.0760 -0.7911 1.2073 5 7 3.2445 -1.5507 0.7390 6 6 3.9923 -2.3835 1.4898 7 8 3.7391 -2.5308 2.6710 8 6 5.1114 -3.1123 0.8831 9 6 5.8578 -4.1047 1.4821 10 6 6.8145 -4.5185 0.5500 11 6 6.6394 -3.7882 -0.5773 12 7 5.6035 -2.9344 -0.3900 13 1 5.2667 -2.3016 -1.0435 14 6 3.4633 -1.2497 -0.6875 15 6 2.0790 -0.7954 -1.2138 16 1 2.1849 -0.1518 -2.0871 17 7 1.2271 -1.9487 -1.5144 18 6 1.2971 -2.5415 -2.7228 19 8 2.0650 -2.1197 -3.5615 20 6 0.4212 -3.7282 -3.0319 21 16 0.7462 -4.2945 -4.7201 22 6 -0.3792 -5.6471 -4.8110 23 1 -0.9997 -5.8915 -3.9614 24 6 -0.4684 -6.3987 -5.9745 25 7 0.2874 -6.1007 -7.0101 26 14 -1.6611 -7.8333 -6.0706 27 1 -2.9727 -7.3535 -6.5753 28 1 -1.1223 -8.8638 -6.9941 29 1 -1.8363 -8.4227 -4.7190 30 1 -0.3633 -1.0260 0.0580 31 1 -0.3634 0.5633 0.8595 32 1 -0.3634 0.4627 -0.9175 33 1 1.3129 -1.4758 1.5776 34 1 2.3741 -0.1023 1.9978 35 1 5.7279 -4.4902 2.4826 36 1 7.5607 -5.2843 0.7019 37 1 7.2265 -3.8750 -1.4796 38 1 3.7960 -2.1425 -1.2169 39 1 4.1931 -0.4477 -0.7984 40 1 0.6127 -2.2859 -0.8438 41 1 0.6397 -4.5335 -2.3306 42 1 -0.6261 -3.4406 -2.9400 43 1 0.2253 -6.6262 -7.8231 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071589851.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:19 Heat of formation + Delta-G solvation = -9.993724 kcal Electronic energy + Delta-G solvation = -26766.304439 eV Core-core repulsion = 22939.025642 eV Total energy + Delta-G solvation = -3827.278796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.63066 -40.38357 -38.98210 -37.68366 -34.27214 -32.85476 -32.48122 -31.20739 -30.18141 -29.59831 -28.31537 -26.77610 -25.54285 -23.98161 -22.00572 -21.07730 -20.75975 -20.32991 -20.13525 -18.08683 -17.91582 -16.94832 -16.73347 -16.19950 -15.88396 -15.32079 -15.05796 -14.84951 -14.76350 -14.15229 -14.10764 -14.01216 -13.63295 -13.41366 -13.25868 -13.16666 -12.88531 -12.72831 -12.61389 -12.53798 -12.37963 -12.10053 -11.70644 -11.39492 -11.16917 -11.10500 -11.07554 -10.80222 -10.33891 -9.87881 -9.60794 -9.35268 -9.15141 -9.11323 -8.92050 -8.36171 -8.32710 -6.57194 -6.27360 -3.98492 1.31783 2.54527 2.61538 2.85377 2.87561 3.00528 3.19089 3.21744 3.24220 3.27846 3.56892 3.86477 4.06734 4.15334 4.35547 4.49860 4.74695 4.84005 4.93326 4.94602 4.99551 5.08249 5.09340 5.21264 5.24375 5.29771 5.34467 5.38951 5.53298 5.57358 5.65605 5.78481 5.82506 5.85764 5.93263 6.04992 6.06123 6.40200 6.56519 6.77868 7.09963 7.21444 7.48835 7.54824 7.88756 8.29841 8.40051 9.18535 10.80069 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.011166 B = 0.003152 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.038393 B = 8880.914961 C =10301.054789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 H 0.101 0.899 4 C 0.111 3.889 5 N -0.618 5.618 6 C 0.607 3.393 7 O -0.531 6.531 8 C -0.059 4.059 9 C -0.105 4.105 10 C -0.214 4.214 11 C 0.026 3.974 12 N -0.543 5.543 13 H 0.419 0.581 14 C 0.070 3.930 15 C 0.143 3.857 16 H 0.114 0.886 17 N -0.727 5.727 18 C 0.535 3.465 19 O -0.517 6.517 20 C -0.155 4.155 21 S -0.058 6.058 22 C -0.537 4.537 23 H 0.073 0.927 24 C 0.075 3.925 25 N -0.868 5.868 26 Si 0.918 3.082 27 H -0.276 1.276 28 H -0.281 1.281 29 H -0.272 1.272 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.172 0.828 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.401 0.599 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.138 12.322 15.619 21.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 H 0.120 0.880 4 C -0.011 4.011 5 N -0.353 5.353 6 C 0.398 3.602 7 O -0.408 6.408 8 C -0.172 4.172 9 C -0.132 4.132 10 C -0.238 4.238 11 C -0.111 4.111 12 N -0.144 5.144 13 H 0.263 0.737 14 C -0.055 4.055 15 C 0.036 3.964 16 H 0.132 0.868 17 N -0.382 5.382 18 C 0.322 3.678 19 O -0.391 6.391 20 C -0.306 4.306 21 S 0.169 5.831 22 C -0.685 4.685 23 H 0.091 0.909 24 C -0.134 4.134 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.202 1.202 28 H -0.207 1.207 29 H -0.197 1.197 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.164 0.836 36 H 0.161 0.839 37 H 0.190 0.810 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.236 0.764 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.276 12.982 14.623 21.233 hybrid contribution -1.975 -1.385 0.764 2.531 sum 6.301 11.596 15.387 20.272 Atomic orbital electron populations 1.21720 0.92776 1.02573 1.02913 1.22565 0.97535 0.99683 0.93080 0.88038 1.22074 0.87614 0.94738 0.96682 1.48336 1.30727 1.45273 1.10928 1.16731 0.80496 0.77748 0.85222 1.90838 1.70431 1.64868 1.14639 1.20259 1.02947 1.06827 0.87126 1.21302 0.95589 0.96326 0.99996 1.20914 1.03845 1.04922 0.94082 1.22176 0.93099 0.94753 1.01023 1.42894 1.26762 1.32117 1.12648 0.73745 1.23147 0.99408 1.01344 0.81572 1.21943 0.88258 0.88146 0.98070 0.86774 1.46013 1.43383 1.32653 1.16145 1.20384 0.82932 0.83699 0.80786 1.90698 1.38320 1.63696 1.46379 1.23542 1.01602 0.97677 1.07733 1.85329 1.54694 1.38184 1.04912 1.22862 1.26066 1.16755 1.02819 0.90915 1.24980 0.96160 0.97661 0.94642 1.70007 1.37582 1.39245 1.03461 0.86170 0.80323 0.80808 0.78245 1.20225 1.20694 1.19655 0.92116 0.91716 0.91287 0.90831 0.90792 0.83588 0.83852 0.81036 0.89760 0.89904 0.76360 0.89247 0.89096 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 8.71 37.16 0.32 -0.55 16 2 C -0.11 -0.72 3.42 -88.79 -0.30 -1.03 16 3 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 4 C 0.11 0.95 6.46 -3.06 -0.02 0.93 16 5 N -0.62 -6.56 3.33 -172.05 -0.57 -7.14 16 6 C 0.61 8.23 7.81 -12.85 -0.10 8.13 16 7 O -0.53 -8.71 17.22 5.19 0.09 -8.62 16 8 C -0.06 -0.75 6.84 -81.98 -0.56 -1.31 16 9 C -0.11 -1.31 10.66 -39.12 -0.42 -1.72 16 10 C -0.21 -2.27 10.81 -39.98 -0.43 -2.70 16 11 C 0.03 0.26 11.89 -16.91 -0.20 0.06 16 12 N -0.54 -5.81 5.39 -9.39 -0.05 -5.86 16 13 H 0.42 3.88 5.21 -40.82 -0.21 3.67 16 14 C 0.07 0.65 5.15 -2.53 -0.01 0.64 16 15 C 0.14 1.32 3.07 -65.78 -0.20 1.12 16 16 H 0.11 1.11 7.73 -51.93 -0.40 0.71 16 17 N -0.73 -8.39 4.69 -51.73 -0.24 -8.63 16 18 C 0.54 8.91 7.85 -10.99 -0.09 8.83 16 19 O -0.52 -10.29 15.61 5.55 0.09 -10.20 16 20 C -0.15 -2.96 6.16 36.01 0.22 -2.74 16 21 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 22 C -0.54 -15.00 9.50 30.94 0.29 -14.70 16 23 H 0.07 1.93 7.80 -52.48 -0.41 1.53 16 24 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 25 N -0.87 -25.66 13.22 55.49 0.73 -24.93 16 26 Si 0.92 21.13 29.55 -169.99 -5.02 16.10 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 30 H 0.06 0.39 6.35 -51.93 -0.33 0.06 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.66 7.77 -51.93 -0.40 0.26 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.15 1.72 8.06 -52.48 -0.42 1.29 16 36 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 37 H 0.17 1.19 8.06 -52.49 -0.42 0.76 16 38 H 0.08 0.93 5.53 -51.93 -0.29 0.64 16 39 H 0.08 0.59 8.11 -51.93 -0.42 0.17 16 40 H 0.40 3.98 6.89 -40.82 -0.28 3.70 16 41 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 42 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 43 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 371.46 15.07 5.60 5.60 Total: -1.00 -35.84 371.46 -8.87 -44.71 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.69 Total: 5.73 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -1.59 Total: -3.05 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: -0.13 Total: -46.56 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.18 Total: -18.81 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.84 -8.87 -44.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071589851.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.721 kcal (2) G-P(sol) polarization free energy of solvation -35.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds