Wall clock time and date at job start Tue Mar 31 2020 20:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.77520 * 2 1 4 4 C 1.54320 * 110.71962 * 123.23703 * 2 1 3 5 5 N 1.47029 * 107.27041 * 140.55838 * 4 2 1 6 6 C 1.34773 * 125.64772 * 181.02382 * 5 4 2 7 7 O 1.21696 * 120.00356 * 358.14950 * 6 5 4 8 8 C 1.46682 * 119.99671 * 178.15251 * 6 5 4 9 9 C 1.37867 * 126.22928 * 188.04887 * 8 6 5 10 10 C 1.39835 * 107.08582 * 180.02562 * 9 8 6 11 11 C 1.35455 * 107.86414 * 359.97438 * 10 9 8 12 12 N 1.35535 * 108.87059 * 359.73538 * 11 10 9 13 13 H 0.96998 * 125.67980 * 180.30022 * 12 11 10 14 14 C 1.47425 * 108.69971 * 1.06007 * 5 4 2 15 15 C 1.54905 * 104.83435 * 335.87164 * 14 5 4 16 16 H 1.08998 * 111.00722 * 155.09014 * 15 14 5 17 17 N 1.46505 * 111.00582 * 278.93707 * 15 14 5 18 18 C 1.34772 * 120.00319 * 273.54851 * 17 15 14 19 19 O 1.21288 * 119.99542 * 359.97438 * 18 17 15 20 20 C 1.50703 * 120.00500 * 179.97438 * 18 17 15 21 21 S 1.80997 * 109.47233 * 180.02562 * 20 18 17 22 22 C 1.76193 * 99.99885 * 180.02562 * 21 20 18 23 23 H 1.08006 * 120.00260 * 359.97438 * 22 21 20 24 24 C 1.38804 * 120.00074 * 179.97438 * 22 21 20 25 25 N 1.31625 * 120.00004 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99960 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47095 * 90.00391 * 26 24 22 28 28 H 1.48497 * 109.46962 * 209.99951 * 26 24 22 29 29 H 1.48490 * 109.47204 * 330.00118 * 26 24 22 30 30 H 1.09000 * 109.47176 * 183.23753 * 1 2 3 31 31 H 1.09002 * 109.47508 * 303.23692 * 1 2 3 32 32 H 1.08998 * 109.47686 * 63.23778 * 1 2 3 33 33 H 1.09002 * 109.88695 * 21.13903 * 4 2 1 34 34 H 1.09006 * 109.88615 * 259.97365 * 4 2 1 35 35 H 1.08007 * 126.46228 * 0.03764 * 9 8 6 36 36 H 1.08005 * 126.07267 * 179.97438 * 10 9 8 37 37 H 1.07997 * 125.56719 * 179.97438 * 11 10 9 38 38 H 1.08996 * 110.36510 * 217.03355 * 14 5 4 39 39 H 1.09002 * 110.36708 * 94.70827 * 14 5 4 40 40 H 0.97003 * 120.00219 * 93.54217 * 17 15 14 41 41 H 1.09002 * 109.46878 * 300.00192 * 20 18 17 42 42 H 1.08999 * 109.46759 * 59.99592 * 20 18 17 43 43 H 0.97004 * 120.00185 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9166 1.0192 0.0000 4 6 2.0760 -0.7911 1.2073 5 7 3.2445 -1.5507 0.7390 6 6 3.9923 -2.3835 1.4898 7 8 3.7391 -2.5308 2.6710 8 6 5.1114 -3.1123 0.8831 9 6 5.8578 -4.1047 1.4821 10 6 6.8145 -4.5185 0.5500 11 6 6.6394 -3.7882 -0.5773 12 7 5.6035 -2.9344 -0.3900 13 1 5.2667 -2.3016 -1.0435 14 6 3.4633 -1.2497 -0.6875 15 6 2.0790 -0.7954 -1.2138 16 1 2.1849 -0.1518 -2.0871 17 7 1.2271 -1.9487 -1.5144 18 6 1.2971 -2.5415 -2.7228 19 8 2.0650 -2.1197 -3.5615 20 6 0.4212 -3.7282 -3.0319 21 16 0.7462 -4.2945 -4.7201 22 6 -0.3792 -5.6471 -4.8110 23 1 -0.9997 -5.8915 -3.9614 24 6 -0.4684 -6.3987 -5.9745 25 7 0.2874 -6.1007 -7.0101 26 14 -1.6611 -7.8333 -6.0706 27 1 -2.9727 -7.3535 -6.5753 28 1 -1.1223 -8.8638 -6.9941 29 1 -1.8363 -8.4227 -4.7190 30 1 -0.3633 -1.0260 0.0580 31 1 -0.3634 0.5633 0.8595 32 1 -0.3634 0.4627 -0.9175 33 1 1.3129 -1.4758 1.5776 34 1 2.3741 -0.1023 1.9978 35 1 5.7279 -4.4902 2.4826 36 1 7.5607 -5.2843 0.7019 37 1 7.2265 -3.8750 -1.4796 38 1 3.7960 -2.1425 -1.2169 39 1 4.1931 -0.4477 -0.7984 40 1 0.6127 -2.2859 -0.8438 41 1 0.6397 -4.5335 -2.3306 42 1 -0.6261 -3.4406 -2.9400 43 1 0.2253 -6.6262 -7.8231 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071589851.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:19 Heat of formation + Delta-G solvation = -34.896597 kcal Electronic energy + Delta-G solvation = -26767.384308 eV Core-core repulsion = 22939.025642 eV Total energy + Delta-G solvation = -3828.358666 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.49936 -41.32575 -40.12766 -38.73288 -35.29724 -34.59874 -33.72786 -32.07785 -31.34246 -30.45151 -29.45794 -27.66523 -27.45300 -24.83064 -22.93708 -21.98267 -21.73710 -21.16969 -20.99244 -19.88189 -18.90752 -18.00797 -17.86085 -17.22702 -16.93278 -16.88872 -16.44813 -16.19827 -15.80353 -15.52385 -15.05009 -14.94217 -14.69307 -14.56685 -14.39434 -14.12955 -13.89386 -13.69973 -13.54419 -13.49319 -13.27130 -13.18704 -13.13768 -12.90910 -12.65329 -12.40072 -12.01600 -11.83027 -11.70837 -11.37414 -11.15642 -10.99913 -10.39299 -10.30725 -10.03570 -9.83955 -9.21789 -8.66691 -8.36601 -6.13521 0.38396 1.24930 1.40722 1.44912 1.53584 1.55593 1.69056 1.77530 2.18085 2.18744 2.25914 2.27496 2.97976 3.15408 3.26750 3.32413 3.57433 3.81574 3.90988 4.09090 4.11657 4.23226 4.26240 4.29027 4.38317 4.44301 4.47799 4.49169 4.59446 4.68202 4.74066 4.96748 5.01291 5.07900 5.13584 5.24501 5.36523 5.40268 5.40720 5.71012 5.90900 6.18009 6.20003 6.38272 6.42159 6.91623 7.05616 7.14821 8.72345 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.011166 B = 0.003152 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.038393 B = 8880.914961 C =10301.054789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.129 0.871 4 C 0.105 3.895 5 N -0.613 5.613 6 C 0.601 3.399 7 O -0.571 6.571 8 C -0.084 4.084 9 C -0.124 4.124 10 C -0.223 4.223 11 C 0.031 3.969 12 N -0.538 5.538 13 H 0.424 0.576 14 C 0.070 3.930 15 C 0.137 3.863 16 H 0.117 0.883 17 N -0.704 5.704 18 C 0.541 3.459 19 O -0.552 6.552 20 C -0.135 4.135 21 S -0.137 6.137 22 C -0.551 4.551 23 H 0.079 0.921 24 C 0.018 3.982 25 N -0.909 5.909 26 Si 0.994 3.006 27 H -0.267 1.267 28 H -0.277 1.277 29 H -0.261 1.261 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.142 0.858 36 H 0.163 0.837 37 H 0.204 0.796 38 H 0.068 0.932 39 H 0.112 0.888 40 H 0.411 0.589 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.498 12.975 16.298 21.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 H 0.147 0.853 4 C -0.016 4.016 5 N -0.346 5.346 6 C 0.392 3.608 7 O -0.452 6.452 8 C -0.196 4.196 9 C -0.151 4.151 10 C -0.247 4.247 11 C -0.106 4.106 12 N -0.140 5.140 13 H 0.270 0.730 14 C -0.054 4.054 15 C 0.031 3.969 16 H 0.135 0.865 17 N -0.359 5.359 18 C 0.327 3.673 19 O -0.430 6.430 20 C -0.286 4.286 21 S 0.091 5.909 22 C -0.699 4.699 23 H 0.097 0.903 24 C -0.187 4.187 25 N -0.545 5.545 26 Si 0.816 3.184 27 H -0.192 1.192 28 H -0.202 1.202 29 H -0.186 1.186 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.160 0.840 36 H 0.181 0.819 37 H 0.221 0.779 38 H 0.086 0.914 39 H 0.130 0.870 40 H 0.249 0.751 41 H 0.117 0.883 42 H 0.127 0.873 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.612 13.678 15.323 21.905 hybrid contribution -1.732 -1.513 0.632 2.385 sum 5.880 12.165 15.955 20.908 Atomic orbital electron populations 1.21744 0.92112 1.02569 1.03639 1.22552 0.97891 1.00121 0.90208 0.85304 1.22270 0.86805 0.94763 0.97794 1.48349 1.30617 1.44381 1.11238 1.16894 0.80887 0.78021 0.84955 1.90801 1.71704 1.66435 1.16220 1.20286 1.03564 1.07615 0.88153 1.21523 0.96412 0.96778 1.00428 1.21224 1.03952 1.05588 0.93894 1.22774 0.92445 0.93547 1.01813 1.42922 1.26768 1.32288 1.12051 0.73042 1.23252 1.00061 1.01613 0.80473 1.22184 0.88036 0.87293 0.99342 0.86483 1.45777 1.43158 1.32517 1.14411 1.19908 0.82226 0.83200 0.81944 1.90690 1.39745 1.64646 1.47904 1.23395 1.03323 0.99122 1.02800 1.85399 1.55476 1.38805 1.11265 1.23207 1.26197 1.17150 1.03301 0.90307 1.26037 0.97948 1.00610 0.94110 1.70154 1.39428 1.40732 1.04185 0.85023 0.77833 0.76924 0.78664 1.19216 1.20203 1.18555 0.92632 0.90107 0.91355 0.91340 0.90104 0.83987 0.81897 0.77913 0.91368 0.87017 0.75134 0.88304 0.87335 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.71 71.98 0.63 -0.69 16 2 C -0.09 -0.90 3.42 -9.61 -0.03 -0.93 16 3 H 0.13 0.74 8.14 -2.38 -0.02 0.72 16 4 C 0.11 1.59 6.46 86.73 0.56 2.15 16 5 N -0.61 -12.27 3.33 -816.48 -2.72 -14.98 16 6 C 0.60 16.29 7.81 86.45 0.68 16.97 16 7 O -0.57 -19.16 17.22 -4.33 -0.07 -19.24 16 8 C -0.08 -2.14 6.84 40.35 0.28 -1.86 16 9 C -0.12 -3.12 10.66 22.57 0.24 -2.88 16 10 C -0.22 -4.54 10.81 22.01 0.24 -4.30 16 11 C 0.03 0.57 11.89 83.48 0.99 1.56 16 12 N -0.54 -11.04 5.39 -183.62 -0.99 -12.03 16 13 H 0.42 7.38 5.21 -92.71 -0.48 6.90 16 14 C 0.07 1.17 5.15 86.85 0.45 1.62 16 15 C 0.14 2.22 3.07 46.38 0.14 2.36 16 16 H 0.12 1.98 7.73 -2.39 -0.02 1.96 16 17 N -0.70 -15.00 4.69 -435.96 -2.05 -17.05 16 18 C 0.54 17.54 7.85 87.66 0.69 18.23 16 19 O -0.55 -21.88 15.61 -3.05 -0.05 -21.93 16 20 C -0.14 -5.08 6.16 71.24 0.44 -4.65 16 21 S -0.14 -7.26 20.57 -56.49 -1.16 -8.42 16 22 C -0.55 -30.90 9.50 67.96 0.65 -30.25 16 23 H 0.08 4.15 7.80 -2.91 -0.02 4.13 16 24 C 0.02 1.01 5.49 84.86 0.47 1.48 16 25 N -0.91 -54.56 13.22 21.65 0.29 -54.27 16 26 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 27 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 28 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 29 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 30 H 0.05 0.58 6.35 -2.39 -0.02 0.56 16 31 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 1.13 7.77 -2.39 -0.02 1.11 16 34 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 36 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 37 H 0.20 2.28 8.06 -2.91 -0.02 2.25 16 38 H 0.07 1.42 5.53 -2.39 -0.01 1.41 16 39 H 0.11 1.28 8.11 -2.39 -0.02 1.27 16 40 H 0.41 7.30 6.89 -92.71 -0.64 6.66 16 41 H 0.10 3.52 8.14 -2.39 -0.02 3.51 16 42 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 43 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -80.24 371.46 1.62 -78.62 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: -0.07 Total: 25.43 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 6.41 Total: -1.20 kcal Atomic # 7 Polarization: -92.87 SS G_CDS: -5.46 Total: -98.33 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -0.12 Total: -41.17 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: -7.26 SS G_CDS: -1.16 Total: -8.42 kcal Total: -80.24 1.62 -78.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071589851.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.724 kcal (2) G-P(sol) polarization free energy of solvation -80.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds