Wall clock time and date at job start Tue Mar 31 2020 20:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.64478 * 2 1 4 4 C 1.54326 * 110.71917 * 123.14423 * 2 1 3 5 5 N 1.47022 * 107.27064 * 140.55921 * 4 2 1 6 6 C 1.34773 * 125.64522 * 181.02431 * 5 4 2 7 7 O 1.21697 * 120.00509 * 5.73979 * 6 5 4 8 8 C 1.46679 * 119.99943 * 185.46153 * 6 5 4 9 9 C 1.37873 * 126.23478 * 186.68807 * 8 6 5 10 10 C 1.39842 * 107.08382 * 179.85092 * 9 8 6 11 11 C 1.35450 * 107.86609 * 0.41664 * 10 9 8 12 12 N 1.35531 * 108.86992 * 359.74475 * 11 10 9 13 13 H 0.97004 * 125.67854 * 179.97438 * 12 11 10 14 14 C 1.47425 * 108.70454 * 1.28389 * 5 4 2 15 15 C 1.55132 * 104.72253 * 335.55497 * 14 5 4 16 16 H 1.08999 * 111.19503 * 279.19333 * 15 14 5 17 17 N 1.46501 * 110.93876 * 155.28630 * 15 14 5 18 18 C 1.34773 * 119.99693 * 92.95678 * 17 15 14 19 19 O 1.21286 * 120.00028 * 0.02562 * 18 17 15 20 20 C 1.50700 * 120.00069 * 179.97438 * 18 17 15 21 21 S 1.80998 * 109.47427 * 180.02562 * 20 18 17 22 22 C 1.76200 * 100.00119 * 180.02562 * 21 20 18 23 23 H 1.08000 * 119.99919 * 359.97438 * 22 21 20 24 24 C 1.38794 * 119.99813 * 180.02562 * 22 21 20 25 25 N 1.31631 * 120.00352 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99872 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47327 * 59.99689 * 26 24 22 28 28 H 1.48500 * 109.47519 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47258 * 299.99728 * 26 24 22 30 30 H 1.08998 * 109.46916 * 298.31155 * 1 2 3 31 31 H 1.09006 * 109.46755 * 58.30836 * 1 2 3 32 32 H 1.08991 * 109.47349 * 178.30800 * 1 2 3 33 33 H 1.08997 * 109.88186 * 21.13470 * 4 2 1 34 34 H 1.09007 * 110.00873 * 260.04363 * 4 2 1 35 35 H 1.07996 * 126.45901 * 0.02562 * 9 8 6 36 36 H 1.08005 * 126.06596 * 180.16480 * 10 9 8 37 37 H 1.07994 * 125.56731 * 179.71930 * 11 10 9 38 38 H 1.08994 * 110.36702 * 94.48816 * 14 5 4 39 39 H 1.09000 * 110.36807 * 216.81169 * 14 5 4 40 40 H 0.96995 * 120.00298 * 272.96314 * 17 15 14 41 41 H 1.08996 * 109.47735 * 300.00611 * 20 18 17 42 42 H 1.09005 * 109.46822 * 60.00627 * 20 18 17 43 43 H 0.97003 * 119.99980 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7892 1.2086 5 7 3.2445 -1.5495 0.7416 6 6 3.9922 -2.3811 1.4938 7 8 3.6586 -2.6337 2.6365 8 6 5.2048 -2.9865 0.9330 9 6 5.9893 -3.9473 1.5350 10 6 7.0338 -4.2375 0.6516 11 6 6.8780 -3.4593 -0.4460 12 7 5.7704 -2.6945 -0.2875 13 1 5.4326 -2.0485 -0.9275 14 6 3.4666 -1.2467 -0.6840 15 6 2.0790 -0.7975 -1.2125 16 1 1.4451 -1.6560 -1.4347 17 7 2.2206 0.0654 -2.3879 18 6 2.1864 -0.4694 -3.6245 19 8 2.0378 -1.6649 -3.7642 20 6 2.3316 0.4183 -4.8336 21 16 2.2440 -0.5884 -6.3352 22 6 2.4369 0.6667 -7.5568 23 1 2.5596 1.6971 -7.2575 24 6 2.4301 0.3312 -8.9035 25 7 2.2790 -0.9245 -9.2683 26 14 2.6353 1.6617 -10.1985 27 1 3.9403 2.3435 -10.0053 28 1 2.5923 1.0479 -11.5501 29 1 1.5358 2.6515 -10.0699 30 1 -0.3633 0.4874 0.9047 31 1 -0.3633 0.5399 -0.8745 32 1 -0.3633 -1.0271 -0.0303 33 1 1.3129 -1.4731 1.5800 34 1 2.3736 -0.1010 1.9998 35 1 5.8261 -4.3940 2.5046 36 1 7.8266 -4.9521 0.8172 37 1 7.5302 -3.4495 -1.3068 38 1 4.1947 -0.4429 -0.7921 39 1 3.8031 -2.1382 -1.2132 40 1 2.3392 1.0216 -2.2761 41 1 1.5277 1.1544 -4.8427 42 1 3.2929 0.9307 -4.7949 43 1 2.2738 -1.1589 -10.2096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071589852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:21 Heat of formation + Delta-G solvation = -41.848147 kcal Electronic energy + Delta-G solvation = -26229.820426 eV Core-core repulsion = 22401.160318 eV Total energy + Delta-G solvation = -3828.660108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.46833 -41.22360 -40.21832 -38.74301 -35.43443 -34.57122 -33.92276 -32.05751 -31.35320 -30.45644 -29.21799 -27.63498 -27.48817 -24.77120 -22.89657 -22.02633 -21.64826 -21.38838 -21.06931 -19.79675 -18.99943 -18.04829 -17.81508 -17.42890 -16.86506 -16.58145 -16.48390 -16.24721 -15.87668 -15.26369 -15.03194 -14.95451 -14.68076 -14.66324 -14.38777 -14.34975 -14.13457 -13.64521 -13.55219 -13.42318 -13.22257 -13.18719 -13.15514 -12.86273 -12.63631 -12.40184 -12.22034 -11.84313 -11.70992 -11.41609 -11.11844 -11.00000 -10.32146 -10.25402 -10.05356 -9.91776 -9.23598 -8.64650 -8.33725 -6.11041 0.36256 1.25087 1.44078 1.44522 1.52298 1.55292 1.67407 1.76820 2.13430 2.25772 2.26121 2.29976 3.00844 3.14124 3.29759 3.33856 3.57426 3.77114 3.89498 3.99759 4.09649 4.17577 4.26289 4.33728 4.37801 4.43831 4.46864 4.55065 4.62621 4.64793 4.77451 4.92449 4.95739 5.06478 5.09856 5.23445 5.31379 5.40008 5.43261 5.70536 5.90392 6.16929 6.20636 6.41754 6.45287 6.87938 7.08290 7.19852 8.74857 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.014161 B = 0.002570 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.840339 B =10890.344049 C =12437.964029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.124 0.876 4 C 0.111 3.889 5 N -0.616 5.616 6 C 0.602 3.398 7 O -0.569 6.569 8 C -0.086 4.086 9 C -0.120 4.120 10 C -0.222 4.222 11 C 0.034 3.966 12 N -0.538 5.538 13 H 0.424 0.576 14 C 0.075 3.925 15 C 0.143 3.857 16 H 0.086 0.914 17 N -0.697 5.697 18 C 0.539 3.461 19 O -0.560 6.560 20 C -0.130 4.130 21 S -0.151 6.151 22 C -0.545 4.545 23 H 0.084 0.916 24 C 0.014 3.986 25 N -0.911 5.911 26 Si 0.995 3.005 27 H -0.261 1.261 28 H -0.282 1.282 29 H -0.263 1.263 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.144 0.856 36 H 0.165 0.835 37 H 0.205 0.795 38 H 0.102 0.898 39 H 0.071 0.929 40 H 0.423 0.577 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.116 5.145 20.658 21.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 H 0.142 0.858 4 C -0.011 4.011 5 N -0.350 5.350 6 C 0.394 3.606 7 O -0.449 6.449 8 C -0.199 4.199 9 C -0.148 4.148 10 C -0.246 4.246 11 C -0.103 4.103 12 N -0.139 5.139 13 H 0.267 0.733 14 C -0.049 4.049 15 C 0.036 3.964 16 H 0.104 0.896 17 N -0.351 5.351 18 C 0.326 3.674 19 O -0.437 6.437 20 C -0.281 4.281 21 S 0.076 5.924 22 C -0.693 4.693 23 H 0.102 0.898 24 C -0.191 4.191 25 N -0.548 5.548 26 Si 0.817 3.183 27 H -0.186 1.186 28 H -0.207 1.207 29 H -0.187 1.187 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.161 0.839 36 H 0.183 0.817 37 H 0.222 0.778 38 H 0.120 0.880 39 H 0.089 0.911 40 H 0.261 0.739 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.593 3.020 20.859 21.571 hybrid contribution 0.093 2.096 -1.041 2.342 sum 4.686 5.116 19.818 20.997 Atomic orbital electron populations 1.21772 0.92290 1.02383 1.03553 1.22505 0.97702 1.00288 0.90505 0.85846 1.22199 0.86837 0.94638 0.97461 1.48237 1.30780 1.44831 1.11105 1.16933 0.81815 0.77520 0.84349 1.90804 1.72296 1.62641 1.19111 1.20251 1.00301 1.08561 0.90750 1.21542 0.95331 0.97401 1.00504 1.21237 1.02533 1.05800 0.95019 1.22790 0.90862 0.94681 1.01966 1.42746 1.22142 1.33580 1.15391 0.73297 1.23066 0.99817 1.01584 0.80467 1.22048 0.94621 0.94653 0.85082 0.89619 1.45504 1.74624 1.11926 1.03093 1.20099 0.74804 0.87955 0.84586 1.90731 1.49107 1.17403 1.86469 1.23376 1.07080 1.02242 0.95443 1.85608 1.95705 1.14572 0.96486 1.23173 1.57615 0.95263 0.93253 0.89773 1.26085 0.93972 0.98581 1.00448 1.70171 1.47705 1.19023 1.17896 0.85052 0.79472 0.77595 0.76198 1.18587 1.20711 1.18734 0.90025 0.91473 0.93244 0.91327 0.89597 0.83851 0.81734 0.77782 0.88019 0.91121 0.73882 0.87017 0.86689 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.13 71.98 0.66 -0.96 16 2 C -0.09 -1.03 3.19 -9.60 -0.03 -1.06 16 3 H 0.12 0.75 8.01 -2.38 -0.02 0.73 16 4 C 0.11 1.75 6.47 86.73 0.56 2.31 16 5 N -0.62 -12.49 3.32 -816.04 -2.71 -15.21 16 6 C 0.60 15.89 7.81 86.45 0.67 16.57 16 7 O -0.57 -18.62 17.23 -4.34 -0.07 -18.69 16 8 C -0.09 -2.06 6.82 40.35 0.28 -1.79 16 9 C -0.12 -2.77 10.66 22.57 0.24 -2.53 16 10 C -0.22 -3.99 10.81 22.01 0.24 -3.75 16 11 C 0.03 0.54 11.89 83.48 0.99 1.53 16 12 N -0.54 -10.02 5.36 -183.62 -0.98 -11.01 16 13 H 0.42 6.64 5.36 -92.71 -0.50 6.14 16 14 C 0.08 1.29 4.95 86.93 0.43 1.72 16 15 C 0.14 2.52 2.88 46.46 0.13 2.65 16 16 H 0.09 2.07 7.43 -2.39 -0.02 2.05 16 17 N -0.70 -12.57 5.20 -435.59 -2.26 -14.83 16 18 C 0.54 16.42 7.85 87.66 0.69 17.11 16 19 O -0.56 -22.75 15.50 -3.05 -0.05 -22.80 16 20 C -0.13 -4.43 6.16 71.24 0.44 -3.99 16 21 S -0.15 -7.79 20.57 -56.49 -1.16 -8.96 16 22 C -0.55 -29.45 9.50 67.95 0.65 -28.80 16 23 H 0.08 4.17 7.80 -2.91 -0.02 4.15 16 24 C 0.01 0.77 5.49 84.86 0.47 1.23 16 25 N -0.91 -54.28 13.22 21.65 0.29 -53.99 16 26 Si 0.99 41.81 29.55 68.60 2.03 43.84 16 27 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 28 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 29 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 30 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.79 8.14 -2.38 -0.02 0.78 16 32 H 0.05 0.71 8.13 -2.39 -0.02 0.69 16 33 H 0.07 1.22 7.82 -2.39 -0.02 1.20 16 34 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 36 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 37 H 0.21 1.80 8.06 -2.91 -0.02 1.78 16 38 H 0.10 1.25 7.85 -2.39 -0.02 1.23 16 39 H 0.07 1.45 6.19 -2.39 -0.01 1.44 16 40 H 0.42 4.43 8.57 -92.71 -0.79 3.63 16 41 H 0.11 3.38 8.14 -2.40 -0.02 3.37 16 42 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 43 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -81.07 375.25 1.24 -79.83 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -0.24 Total: 21.59 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 6.41 Total: 0.23 kcal Atomic # 7 Polarization: -89.36 SS G_CDS: -5.67 Total: -95.04 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -0.12 Total: -41.49 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: -7.79 SS G_CDS: -1.16 Total: -8.96 kcal Total: -81.07 1.24 -79.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071589852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.983 kcal (2) G-P(sol) polarization free energy of solvation -81.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds