Wall clock time and date at job start Tue Mar 31 2020 20:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.88710 * 2 1 4 4 C 1.54904 * 111.00855 * 123.88740 * 2 1 3 5 5 N 1.47420 * 104.83635 * 155.08338 * 4 2 1 6 6 C 1.34774 * 125.64951 * 155.83786 * 5 4 2 7 7 O 1.21281 * 120.00308 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00142 * 180.02562 * 6 5 4 9 9 S 1.81003 * 109.47404 * 179.97438 * 8 6 5 10 10 C 1.76202 * 100.00230 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99701 * 0.02562 * 10 9 8 12 12 C 1.38795 * 119.99830 * 179.97438 * 10 9 8 13 13 N 1.31629 * 120.00477 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99603 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47080 * 90.00552 * 14 12 10 16 16 H 1.48503 * 109.46960 * 209.99731 * 14 12 10 17 17 H 1.48496 * 109.47326 * 330.00087 * 14 12 10 18 18 C 1.47018 * 108.70193 * 335.87134 * 5 4 2 19 19 C 1.54371 * 107.28954 * 1.09430 * 18 5 4 20 20 H 1.09000 * 110.69938 * 263.79651 * 19 18 5 21 21 N 1.46495 * 110.75708 * 140.50781 * 19 18 5 22 22 C 1.34779 * 120.00164 * 91.48224 * 21 19 18 23 23 O 1.21686 * 119.99972 * 359.97438 * 22 21 19 24 24 C 1.46683 * 119.99961 * 179.97438 * 22 21 19 25 25 C 1.37869 * 126.23177 * 179.69061 * 24 22 21 26 26 C 1.39839 * 107.08291 * 179.84614 * 25 24 22 27 27 C 1.35451 * 107.86254 * 0.41961 * 26 25 24 28 28 N 1.35531 * 108.87734 * 359.73757 * 27 26 25 29 29 H 0.96995 * 125.68344 * 179.97438 * 28 27 26 30 30 H 1.09002 * 109.47153 * 300.69429 * 1 2 3 31 31 H 1.09001 * 109.46832 * 180.69620 * 1 2 3 32 32 H 1.09004 * 109.47261 * 60.69601 * 1 2 3 33 33 H 1.09004 * 110.36628 * 273.92431 * 4 2 1 34 34 H 1.09001 * 110.36928 * 36.24245 * 4 2 1 35 35 H 1.09005 * 109.47184 * 299.99337 * 8 6 5 36 36 H 1.08998 * 109.47917 * 59.99534 * 8 6 5 37 37 H 0.97000 * 119.99984 * 180.02562 * 13 12 10 38 38 H 1.09002 * 109.88343 * 120.47841 * 18 5 4 39 39 H 1.09000 * 109.88049 * 241.48392 * 18 5 4 40 40 H 0.96999 * 120.00014 * 271.47886 * 21 19 18 41 41 H 1.08002 * 126.45641 * 359.96060 * 25 24 22 42 42 H 1.07995 * 126.06600 * 180.13761 * 26 25 24 43 43 H 1.08010 * 125.55965 * 179.70845 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8063 1.2004 5 7 3.4271 -1.2428 0.7736 6 6 4.4481 -1.5598 1.5943 7 8 4.3018 -1.4965 2.7966 8 6 5.7718 -1.9919 1.0181 9 16 6.9293 -2.3452 2.3641 10 6 8.3491 -2.8136 1.4317 11 1 8.3099 -2.8152 0.3524 12 6 9.5182 -3.1794 2.0843 13 7 9.5661 -3.1770 3.3997 14 14 11.0236 -3.6754 1.0957 15 1 11.8499 -2.4736 0.8158 16 1 11.8241 -4.6565 1.8716 17 1 10.5938 -4.2901 -0.1858 18 6 3.4674 -1.2743 -0.6957 19 6 2.0861 -0.8073 -1.2026 20 1 1.4468 -1.6625 -1.4217 21 7 2.2286 0.0507 -2.3815 22 6 2.2004 -0.4899 -3.6158 23 8 2.0570 -1.6907 -3.7510 24 6 2.3424 0.3693 -4.7962 25 6 2.3382 -0.0453 -6.1111 26 6 2.4969 1.0968 -6.9023 27 6 2.6025 2.1640 -6.0750 28 7 2.5102 1.7356 -4.7925 29 1 2.5553 2.2979 -4.0035 30 1 -0.3633 0.5246 0.8837 31 1 -0.3633 -1.0276 0.0125 32 1 -0.3634 0.5030 -0.8962 33 1 2.1560 -0.1714 2.0837 34 1 1.4520 -1.6700 1.4029 35 1 5.6303 -2.8891 0.4154 36 1 6.1741 -1.1943 0.3935 37 1 10.3833 -3.4323 3.8557 38 1 4.2426 -0.6000 -1.0599 39 1 3.6678 -2.2891 -1.0394 40 1 2.3432 1.0078 -2.2738 41 1 2.2306 -1.0604 -6.4636 42 1 2.5338 1.1226 -7.9813 43 1 2.7386 3.1892 -6.3865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071655888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:57 Heat of formation + Delta-G solvation = -22.905158 kcal Electronic energy + Delta-G solvation = -25962.234426 eV Core-core repulsion = 22134.395748 eV Total energy + Delta-G solvation = -3827.838678 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.67651 -40.36980 -39.09778 -37.50889 -34.51898 -32.95634 -32.42853 -31.46643 -30.10777 -29.49691 -28.43196 -26.21620 -25.41731 -24.05811 -22.31538 -21.23053 -20.88830 -20.41867 -19.45528 -19.13940 -17.75743 -17.04840 -16.59939 -16.13832 -15.61423 -15.39778 -15.25064 -14.80109 -14.44676 -14.24814 -14.14369 -14.00951 -13.82071 -13.68980 -13.47549 -13.04350 -12.91833 -12.70240 -12.67046 -12.48315 -12.32634 -11.89530 -11.72024 -11.52833 -11.09624 -11.04926 -11.01575 -10.75613 -10.47540 -9.82287 -9.68892 -9.42374 -9.39140 -9.06511 -8.65290 -8.57514 -8.24640 -6.50895 -6.21632 -3.92500 1.07180 2.35772 2.51219 2.66450 2.93768 3.02280 3.03857 3.22778 3.26803 3.31314 3.60438 3.94626 4.20497 4.24801 4.45753 4.47554 4.63603 4.82361 4.95703 4.97632 5.00740 5.02434 5.06479 5.13616 5.33836 5.40302 5.47912 5.53525 5.60747 5.65835 5.67595 5.71712 5.78298 5.80981 5.91015 6.02756 6.13767 6.28053 6.33083 6.49996 6.87788 7.06346 7.57761 7.60392 7.76671 8.35578 8.50154 9.23769 10.85820 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.010843 B = 0.002688 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.671637 B =10414.197361 C =12481.360668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.089 0.911 4 C 0.113 3.887 5 N -0.626 5.626 6 C 0.550 3.450 7 O -0.513 6.513 8 C -0.147 4.147 9 S -0.060 6.060 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.091 3.909 19 C 0.140 3.860 20 H 0.113 0.887 21 N -0.722 5.722 22 C 0.591 3.409 23 O -0.521 6.521 24 C -0.059 4.059 25 C -0.103 4.103 26 C -0.213 4.213 27 C 0.025 3.975 28 N -0.541 5.541 29 H 0.416 0.584 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.268 0.732 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.396 0.604 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.881 13.512 -17.799 29.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 H 0.107 0.893 4 C -0.010 4.010 5 N -0.364 5.364 6 C 0.339 3.661 7 O -0.387 6.387 8 C -0.298 4.298 9 S 0.166 5.834 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.196 1.196 18 C -0.034 4.034 19 C 0.035 3.965 20 H 0.131 0.869 21 N -0.373 5.373 22 C 0.379 3.621 23 O -0.396 6.396 24 C -0.172 4.172 25 C -0.130 4.130 26 C -0.237 4.237 27 C -0.111 4.111 28 N -0.137 5.137 29 H 0.253 0.747 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.230 0.770 41 H 0.166 0.834 42 H 0.162 0.838 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -20.013 12.695 -15.709 28.433 hybrid contribution 1.359 0.470 -1.752 2.266 sum -18.653 13.165 -17.461 28.742 Atomic orbital electron populations 1.21704 0.92974 1.02838 1.02302 1.22672 0.96900 0.99622 0.93915 0.89267 1.22203 0.83505 0.98281 0.97006 1.48416 1.12265 1.69506 1.06172 1.20033 0.84009 0.76020 0.86020 1.90713 1.82303 1.51483 1.14210 1.23516 0.96205 1.03933 1.06133 1.85369 1.05032 1.87360 1.05601 1.22857 0.97931 1.52691 0.94804 0.90931 1.24990 0.98495 0.94921 0.95154 1.70017 1.28082 1.45137 1.07074 0.86165 0.81267 0.78442 0.79629 1.20277 1.20715 1.19633 1.22391 0.97496 1.02643 0.80833 1.22086 0.96171 0.94369 0.83871 0.86935 1.45790 1.75431 1.10729 1.05352 1.17094 0.76230 0.87196 0.81549 1.90879 1.49120 1.13917 1.85731 1.20395 1.18568 0.82712 0.95505 1.21387 1.01736 0.99655 0.90177 1.20949 1.11101 0.91905 0.99732 1.22078 1.06236 1.00134 0.82693 1.42028 1.56292 1.06948 1.08465 0.74743 0.91696 0.91826 0.92163 0.89796 0.91069 0.89194 0.89414 0.92176 0.91035 0.90373 0.77031 0.83364 0.83796 0.81115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.29 37.16 0.35 -0.48 16 2 C -0.11 -0.83 3.27 -88.48 -0.29 -1.12 16 3 H 0.09 0.57 8.01 -51.93 -0.42 0.16 16 4 C 0.11 1.26 6.38 -2.53 -0.02 1.24 16 5 N -0.63 -9.00 3.33 -170.50 -0.57 -9.57 16 6 C 0.55 10.75 7.87 -10.99 -0.09 10.66 16 7 O -0.51 -11.91 16.12 5.56 0.09 -11.82 16 8 C -0.15 -3.11 5.35 36.00 0.19 -2.92 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 10 C -0.53 -15.45 9.50 30.94 0.29 -15.16 16 11 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 12 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 13 N -0.87 -26.38 13.22 55.49 0.73 -25.64 16 14 Si 0.92 21.67 29.55 -169.99 -5.02 16.64 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 C 0.09 1.08 6.24 -3.04 -0.02 1.06 16 19 C 0.14 1.25 2.79 -66.07 -0.18 1.07 16 20 H 0.11 1.13 7.45 -51.93 -0.39 0.74 16 21 N -0.72 -5.39 5.10 -53.31 -0.27 -5.66 16 22 C 0.59 6.06 7.79 -12.85 -0.10 5.96 16 23 O -0.52 -7.38 16.53 5.20 0.09 -7.30 16 24 C -0.06 -0.52 7.06 -81.98 -0.58 -1.10 16 25 C -0.10 -0.94 10.65 -39.12 -0.42 -1.36 16 26 C -0.21 -1.48 10.81 -39.98 -0.43 -1.92 16 27 C 0.02 0.13 11.89 -16.91 -0.20 -0.07 16 28 N -0.54 -2.91 5.99 -9.39 -0.06 -2.97 16 29 H 0.42 0.96 8.19 -40.82 -0.33 0.62 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 34 H 0.07 0.76 8.03 -51.93 -0.42 0.34 16 35 H 0.09 1.81 8.14 -51.91 -0.42 1.38 16 36 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 37 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.07 0.83 8.03 -51.93 -0.42 0.41 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.40 1.79 7.69 -40.82 -0.31 1.48 16 41 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.17 0.32 8.06 -52.48 -0.42 -0.10 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -38.01 380.65 -9.12 -47.13 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.05 Total: -0.59 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -1.59 Total: -2.10 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: -0.16 Total: -43.83 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: 0.18 Total: -19.12 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.01 -9.12 -47.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071655888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.230 kcal (2) G-P(sol) polarization free energy of solvation -38.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds