Wall clock time and date at job start Tue Mar 31 2020 20:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.88710 * 2 1 4 4 C 1.54904 * 111.00855 * 123.88740 * 2 1 3 5 5 N 1.47420 * 104.83635 * 155.08338 * 4 2 1 6 6 C 1.34774 * 125.64951 * 155.83786 * 5 4 2 7 7 O 1.21281 * 120.00308 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00142 * 180.02562 * 6 5 4 9 9 S 1.81003 * 109.47404 * 179.97438 * 8 6 5 10 10 C 1.76202 * 100.00230 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99701 * 0.02562 * 10 9 8 12 12 C 1.38795 * 119.99830 * 179.97438 * 10 9 8 13 13 N 1.31629 * 120.00477 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99603 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47080 * 90.00552 * 14 12 10 16 16 H 1.48503 * 109.46960 * 209.99731 * 14 12 10 17 17 H 1.48496 * 109.47326 * 330.00087 * 14 12 10 18 18 C 1.47018 * 108.70193 * 335.87134 * 5 4 2 19 19 C 1.54371 * 107.28954 * 1.09430 * 18 5 4 20 20 H 1.09000 * 110.69938 * 263.79651 * 19 18 5 21 21 N 1.46495 * 110.75708 * 140.50781 * 19 18 5 22 22 C 1.34779 * 120.00164 * 91.48224 * 21 19 18 23 23 O 1.21686 * 119.99972 * 359.97438 * 22 21 19 24 24 C 1.46683 * 119.99961 * 179.97438 * 22 21 19 25 25 C 1.37869 * 126.23177 * 179.69061 * 24 22 21 26 26 C 1.39839 * 107.08291 * 179.84614 * 25 24 22 27 27 C 1.35451 * 107.86254 * 0.41961 * 26 25 24 28 28 N 1.35531 * 108.87734 * 359.73757 * 27 26 25 29 29 H 0.96995 * 125.68344 * 179.97438 * 28 27 26 30 30 H 1.09002 * 109.47153 * 300.69429 * 1 2 3 31 31 H 1.09001 * 109.46832 * 180.69620 * 1 2 3 32 32 H 1.09004 * 109.47261 * 60.69601 * 1 2 3 33 33 H 1.09004 * 110.36628 * 273.92431 * 4 2 1 34 34 H 1.09001 * 110.36928 * 36.24245 * 4 2 1 35 35 H 1.09005 * 109.47184 * 299.99337 * 8 6 5 36 36 H 1.08998 * 109.47917 * 59.99534 * 8 6 5 37 37 H 0.97000 * 119.99984 * 180.02562 * 13 12 10 38 38 H 1.09002 * 109.88343 * 120.47841 * 18 5 4 39 39 H 1.09000 * 109.88049 * 241.48392 * 18 5 4 40 40 H 0.96999 * 120.00014 * 271.47886 * 21 19 18 41 41 H 1.08002 * 126.45641 * 359.96060 * 25 24 22 42 42 H 1.07995 * 126.06600 * 180.13761 * 26 25 24 43 43 H 1.08010 * 125.55965 * 179.70845 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8063 1.2004 5 7 3.4271 -1.2428 0.7736 6 6 4.4481 -1.5598 1.5943 7 8 4.3018 -1.4965 2.7966 8 6 5.7718 -1.9919 1.0181 9 16 6.9293 -2.3452 2.3641 10 6 8.3491 -2.8136 1.4317 11 1 8.3099 -2.8152 0.3524 12 6 9.5182 -3.1794 2.0843 13 7 9.5661 -3.1770 3.3997 14 14 11.0236 -3.6754 1.0957 15 1 11.8499 -2.4736 0.8158 16 1 11.8241 -4.6565 1.8716 17 1 10.5938 -4.2901 -0.1858 18 6 3.4674 -1.2743 -0.6957 19 6 2.0861 -0.8073 -1.2026 20 1 1.4468 -1.6625 -1.4217 21 7 2.2286 0.0507 -2.3815 22 6 2.2004 -0.4899 -3.6158 23 8 2.0570 -1.6907 -3.7510 24 6 2.3424 0.3693 -4.7962 25 6 2.3382 -0.0453 -6.1111 26 6 2.4969 1.0968 -6.9023 27 6 2.6025 2.1640 -6.0750 28 7 2.5102 1.7356 -4.7925 29 1 2.5553 2.2979 -4.0035 30 1 -0.3633 0.5246 0.8837 31 1 -0.3633 -1.0276 0.0125 32 1 -0.3634 0.5030 -0.8962 33 1 2.1560 -0.1714 2.0837 34 1 1.4520 -1.6700 1.4029 35 1 5.6303 -2.8891 0.4154 36 1 6.1741 -1.1943 0.3935 37 1 10.3833 -3.4323 3.8557 38 1 4.2426 -0.6000 -1.0599 39 1 3.6678 -2.2891 -1.0394 40 1 2.3432 1.0078 -2.2738 41 1 2.2306 -1.0604 -6.4636 42 1 2.5338 1.1226 -7.9813 43 1 2.7386 3.1892 -6.3865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071655888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:56 Heat of formation + Delta-G solvation = -50.687382 kcal Electronic energy + Delta-G solvation = -25963.439153 eV Core-core repulsion = 22134.395748 eV Total energy + Delta-G solvation = -3829.043406 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.25391 -41.37938 -40.15025 -38.68114 -35.48053 -34.62393 -33.87950 -31.99561 -31.01011 -30.80324 -29.23589 -27.79411 -26.98962 -24.93027 -23.08467 -21.96125 -21.45812 -21.00772 -20.82316 -19.81281 -19.64105 -18.23028 -17.81512 -16.92960 -16.90433 -16.76322 -16.48877 -16.24511 -15.86440 -15.28308 -15.00662 -14.82740 -14.64098 -14.55501 -14.52956 -14.35614 -14.05187 -13.65164 -13.50311 -13.42352 -13.20092 -13.18026 -13.10524 -12.91630 -12.66562 -12.44890 -12.22470 -11.81329 -11.75346 -11.32465 -11.17514 -11.09841 -10.38795 -10.34492 -9.94228 -9.82336 -9.18625 -8.72394 -8.38231 -6.17360 0.43498 1.17763 1.40046 1.40168 1.46185 1.53028 1.77163 1.84779 2.11264 2.23595 2.26232 2.32770 2.95775 3.09860 3.29356 3.40335 3.74268 3.79931 3.86559 4.01273 4.15699 4.19415 4.35367 4.36201 4.41100 4.42912 4.52558 4.55642 4.64587 4.70473 4.80149 4.93666 5.05021 5.13201 5.17602 5.26855 5.29111 5.37842 5.38411 5.74179 5.92974 6.16023 6.22669 6.37211 6.61517 7.00320 7.02857 7.05139 8.71111 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.010843 B = 0.002688 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.671637 B =10414.197361 C =12481.360668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 H 0.110 0.890 4 C 0.104 3.896 5 N -0.614 5.614 6 C 0.550 3.450 7 O -0.559 6.559 8 C -0.123 4.123 9 S -0.143 6.143 10 C -0.549 4.549 11 H 0.079 0.921 12 C 0.015 3.985 13 N -0.910 5.910 14 Si 0.999 3.001 15 H -0.265 1.265 16 H -0.275 1.275 17 H -0.261 1.261 18 C 0.085 3.915 19 C 0.150 3.850 20 H 0.104 0.896 21 N -0.703 5.703 22 C 0.592 3.408 23 O -0.570 6.570 24 C -0.082 4.082 25 C -0.128 4.128 26 C -0.233 4.233 27 C 0.048 3.952 28 N -0.526 5.526 29 H 0.432 0.568 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.272 0.728 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.414 0.586 41 H 0.133 0.867 42 H 0.158 0.842 43 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.400 15.923 -20.193 32.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.110 4.110 3 H 0.128 0.872 4 C -0.018 4.018 5 N -0.349 5.349 6 C 0.338 3.662 7 O -0.437 6.437 8 C -0.274 4.274 9 S 0.084 5.916 10 C -0.696 4.696 11 H 0.098 0.902 12 C -0.190 4.190 13 N -0.546 5.546 14 Si 0.820 3.180 15 H -0.190 1.190 16 H -0.201 1.201 17 H -0.185 1.185 18 C -0.039 4.039 19 C 0.044 3.956 20 H 0.122 0.878 21 N -0.355 5.355 22 C 0.381 3.619 23 O -0.449 6.449 24 C -0.195 4.195 25 C -0.155 4.155 26 C -0.256 4.256 27 C -0.090 4.090 28 N -0.123 5.123 29 H 0.272 0.728 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.251 0.749 41 H 0.151 0.849 42 H 0.175 0.825 43 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -20.576 15.171 -18.116 31.333 hybrid contribution 1.402 -0.212 -1.109 1.800 sum -19.174 14.960 -19.225 31.001 Atomic orbital electron populations 1.21702 0.91191 1.03030 1.03520 1.22610 0.98054 0.99587 0.90729 0.87174 1.22515 0.81664 0.99029 0.98595 1.48277 1.12283 1.67275 1.07041 1.19675 0.84491 0.76322 0.85720 1.90692 1.83091 1.53926 1.16008 1.23320 0.95683 1.04925 1.03488 1.85495 1.07646 1.87886 1.10554 1.23169 0.98362 1.53003 0.95095 0.90247 1.26123 1.02056 0.94482 0.96316 1.70172 1.29240 1.46058 1.09110 0.84952 0.76554 0.78416 0.78054 1.19034 1.20051 1.18478 1.22596 0.99777 1.02504 0.79020 1.21895 0.94147 0.94808 0.84756 0.87814 1.45557 1.74391 1.11455 1.04090 1.17323 0.75364 0.86732 0.82457 1.90853 1.51551 1.16033 1.86448 1.20113 1.20619 0.84140 0.94588 1.21540 1.02686 1.00018 0.91280 1.21223 1.11968 0.91696 1.00751 1.22722 1.02942 1.01359 0.81939 1.42003 1.55097 1.05731 1.09509 0.72797 0.90584 0.92256 0.90795 0.90366 0.90581 0.88263 0.87753 0.91852 0.90254 0.91495 0.74902 0.84898 0.82480 0.77059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.29 71.98 0.67 -0.53 16 2 C -0.09 -1.11 3.27 -9.40 -0.03 -1.14 16 3 H 0.11 0.97 8.01 -2.39 -0.02 0.95 16 4 C 0.10 2.18 6.38 86.85 0.55 2.74 16 5 N -0.61 -17.26 3.33 -811.73 -2.70 -19.96 16 6 C 0.55 21.72 7.87 87.66 0.69 22.41 16 7 O -0.56 -26.76 16.12 -3.03 -0.05 -26.81 16 8 C -0.12 -5.25 5.35 71.23 0.38 -4.87 16 9 S -0.14 -8.16 20.57 -56.49 -1.16 -9.33 16 10 C -0.55 -32.12 9.50 67.95 0.65 -31.47 16 11 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 12 C 0.02 0.88 5.49 84.86 0.47 1.35 16 13 N -0.91 -56.41 13.22 21.65 0.29 -56.12 16 14 Si 1.00 44.33 29.55 68.60 2.03 46.36 16 15 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 16 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 17 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 18 C 0.09 1.92 6.24 86.75 0.54 2.46 16 19 C 0.15 2.41 2.79 46.20 0.13 2.54 16 20 H 0.10 1.97 7.45 -2.39 -0.02 1.95 16 21 N -0.70 -8.97 5.10 -440.80 -2.25 -11.22 16 22 C 0.59 11.63 7.79 86.45 0.67 12.31 16 23 O -0.57 -16.45 16.53 -4.30 -0.07 -16.52 16 24 C -0.08 -1.33 7.06 40.35 0.28 -1.04 16 25 C -0.13 -2.31 10.65 22.57 0.24 -2.07 16 26 C -0.23 -2.81 10.81 22.01 0.24 -2.57 16 27 C 0.05 0.32 11.89 83.48 0.99 1.31 16 28 N -0.53 -4.00 5.99 -183.61 -1.10 -5.10 16 29 H 0.43 0.26 8.19 -92.71 -0.76 -0.50 16 30 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.60 8.13 -2.39 -0.02 0.58 16 32 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.08 1.79 8.04 -2.39 -0.02 1.77 16 34 H 0.08 1.56 8.03 -2.39 -0.02 1.54 16 35 H 0.10 4.01 8.14 -2.39 -0.02 3.99 16 36 H 0.10 4.06 8.14 -2.40 -0.02 4.04 16 37 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 38 H 0.08 1.69 8.03 -2.39 -0.02 1.67 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.41 2.32 7.69 -92.71 -0.71 1.61 16 41 H 0.13 2.66 8.06 -2.91 -0.02 2.63 16 42 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 43 H 0.21 -0.36 8.06 -2.91 -0.02 -0.38 16 Total: -1.00 -87.17 380.65 1.03 -86.14 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -0.43 Total: 11.13 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 6.47 Total: 1.42 kcal Atomic # 7 Polarization: -86.63 SS G_CDS: -5.76 Total: -92.40 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -0.12 Total: -43.33 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: -8.16 SS G_CDS: -1.16 Total: -9.33 kcal Total: -87.17 1.03 -86.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071655888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.453 kcal (2) G-P(sol) polarization free energy of solvation -87.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds