Wall clock time and date at job start Tue Mar 31 2020 20:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.89041 * 2 1 4 4 C 1.54912 * 111.00317 * 236.12364 * 2 1 3 5 5 N 1.47471 * 104.81180 * 204.94518 * 4 2 1 6 6 C 1.34773 * 125.63533 * 204.04570 * 5 4 2 7 7 O 1.21285 * 119.99301 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00490 * 179.97438 * 6 5 4 9 9 S 1.80996 * 109.47046 * 180.02562 * 8 6 5 10 10 C 1.76206 * 99.99893 * 180.02562 * 9 8 6 11 11 H 1.07994 * 119.99655 * 359.97438 * 10 9 8 12 12 C 1.38793 * 120.00020 * 179.97438 * 10 9 8 13 13 N 1.31626 * 120.00029 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99872 * 179.97438 * 12 10 9 15 15 H 1.48492 * 109.47298 * 60.00258 * 14 12 10 16 16 H 1.48504 * 109.47192 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46960 * 300.00071 * 14 12 10 18 18 C 1.47028 * 108.71990 * 24.07002 * 5 4 2 19 19 C 1.54319 * 107.27161 * 358.97693 * 18 5 4 20 20 H 1.09005 * 110.87619 * 219.37370 * 19 18 5 21 21 N 1.46501 * 110.72289 * 96.16774 * 19 18 5 22 22 C 1.34771 * 119.99850 * 91.48001 * 21 19 18 23 23 O 1.21699 * 120.00195 * 359.97438 * 22 21 19 24 24 C 1.46683 * 119.99886 * 179.97438 * 22 21 19 25 25 C 1.37875 * 126.22983 * 179.68781 * 24 22 21 26 26 C 1.39841 * 107.07931 * 179.84943 * 25 24 22 27 27 C 1.35448 * 107.86649 * 0.41663 * 26 25 24 28 28 N 1.35536 * 108.87171 * 359.74220 * 27 26 25 29 29 H 0.96998 * 125.67859 * 180.02562 * 28 27 26 30 30 H 1.09002 * 109.47153 * 299.29483 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.29674 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.29655 * 1 2 3 33 33 H 1.08997 * 110.37032 * 323.75124 * 4 2 1 34 34 H 1.09000 * 110.36843 * 86.07702 * 4 2 1 35 35 H 1.08994 * 109.46957 * 300.00499 * 8 6 5 36 36 H 1.09003 * 109.46557 * 60.00593 * 8 6 5 37 37 H 0.97007 * 119.99963 * 179.97438 * 13 12 10 38 38 H 1.08998 * 109.88565 * 239.55552 * 18 5 4 39 39 H 1.09002 * 110.00739 * 118.46416 * 18 5 4 40 40 H 0.97002 * 120.00069 * 271.47639 * 21 19 18 41 41 H 1.07994 * 126.45843 * 359.96421 * 25 24 22 42 42 H 1.08004 * 126.06567 * 180.17892 * 26 25 24 43 43 H 1.08001 * 125.56781 * 179.70505 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0852 -0.8061 -1.2007 5 7 3.4272 -1.2433 -0.7731 6 6 4.4476 -1.5624 -1.5936 7 8 4.3008 -1.5008 -2.7959 8 6 5.7712 -1.9948 -1.0172 9 16 6.9277 -2.3511 -2.3631 10 6 8.3475 -2.8193 -1.4304 11 1 8.3087 -2.8192 -0.3512 12 6 9.5157 -3.1882 -2.0828 13 7 9.5631 -3.1878 -3.3982 14 14 11.0211 -3.6839 -1.0941 15 1 10.6938 -4.8617 -0.2511 16 1 12.1295 -4.0298 -2.0198 17 1 11.4369 -2.5535 -0.2253 18 6 3.4675 -1.2738 0.6964 19 6 2.0862 -0.8076 1.2024 20 1 2.1892 -0.1699 2.0805 21 7 1.2269 -1.9570 1.4968 22 6 1.2062 -2.4826 2.7376 23 8 1.9017 -2.0027 3.6134 24 6 0.3454 -3.6331 3.0325 25 6 0.2288 -4.2732 4.2480 26 6 -0.6982 -5.3068 4.0806 27 6 -1.1152 -5.2863 2.7921 28 7 -0.4885 -4.2740 2.1445 29 1 -0.6081 -4.0398 1.2108 30 1 -0.3633 0.5028 0.8962 31 1 -0.3633 -1.0276 -0.0126 32 1 -0.3634 0.5247 -0.8836 33 1 1.4519 -1.6698 -1.4032 34 1 2.1559 -0.1711 -2.0838 35 1 6.1741 -1.1965 -0.3940 36 1 5.6290 -2.8908 -0.4131 37 1 10.3797 -3.4452 -3.8542 38 1 4.2426 -0.5993 1.0601 39 1 3.6663 -2.2880 1.0430 40 1 0.6728 -2.3397 0.7986 41 1 0.7530 -4.0224 5.1583 42 1 -1.0211 -6.0008 4.8426 43 1 -1.8299 -5.9662 2.3523 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071655889.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:59 Heat of formation + Delta-G solvation = -19.737304 kcal Electronic energy + Delta-G solvation = -26226.309525 eV Core-core repulsion = 22398.608215 eV Total energy + Delta-G solvation = -3827.701310 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.66921 -40.48607 -39.03333 -37.54957 -34.35859 -32.82869 -32.42944 -31.41627 -30.11154 -29.52072 -28.62367 -26.26423 -25.42097 -23.94799 -22.72328 -21.13002 -20.48550 -20.33307 -19.53309 -19.31776 -17.70483 -16.86788 -16.66463 -16.09244 -15.69271 -15.51637 -15.06428 -14.79970 -14.49903 -14.41109 -14.22107 -14.00449 -13.81360 -13.74260 -13.23498 -13.03662 -12.90627 -12.74739 -12.64815 -12.47439 -12.39932 -11.98201 -11.71442 -11.39573 -11.13021 -11.03128 -11.02986 -10.76282 -10.45532 -9.83365 -9.68587 -9.40555 -9.38450 -9.05741 -8.63232 -8.58180 -8.25587 -6.51297 -6.21600 -3.92668 1.10536 2.38954 2.61905 2.71658 2.86415 3.00539 3.06951 3.24608 3.26221 3.29782 3.58375 3.92937 4.20644 4.23070 4.43110 4.48169 4.66625 4.84629 4.92823 4.97215 4.98689 5.06013 5.11266 5.13736 5.22754 5.29633 5.47846 5.51850 5.56908 5.63154 5.69406 5.71289 5.75900 5.80923 5.89470 6.04863 6.13490 6.30901 6.32040 6.53112 6.90803 7.09422 7.56992 7.60152 7.79709 8.35445 8.49014 9.23738 10.85805 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012292 B = 0.002650 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.440878 B =10564.122397 C =11897.686097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 H 0.103 0.897 4 C 0.110 3.890 5 N -0.626 5.626 6 C 0.550 3.450 7 O -0.515 6.515 8 C -0.147 4.147 9 S -0.060 6.060 10 C -0.535 4.535 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.273 1.273 18 C 0.091 3.909 19 C 0.139 3.861 20 H 0.116 0.884 21 N -0.721 5.721 22 C 0.592 3.408 23 O -0.524 6.524 24 C -0.059 4.059 25 C -0.103 4.103 26 C -0.213 4.213 27 C 0.025 3.975 28 N -0.541 5.541 29 H 0.415 0.585 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.269 0.731 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.395 0.605 41 H 0.148 0.852 42 H 0.144 0.856 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.928 1.467 12.470 28.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.122 0.878 4 C -0.013 4.013 5 N -0.364 5.364 6 C 0.339 3.661 7 O -0.389 6.389 8 C -0.298 4.298 9 S 0.166 5.834 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.135 4.135 13 N -0.504 5.504 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.033 4.033 19 C 0.034 3.966 20 H 0.134 0.866 21 N -0.373 5.373 22 C 0.380 3.620 23 O -0.399 6.399 24 C -0.172 4.172 25 C -0.130 4.130 26 C -0.237 4.237 27 C -0.111 4.111 28 N -0.137 5.137 29 H 0.252 0.748 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.230 0.770 41 H 0.166 0.834 42 H 0.162 0.838 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -25.414 1.934 10.936 27.734 hybrid contribution 0.810 -0.660 1.248 1.628 sum -24.603 1.274 12.184 27.484 Atomic orbital electron populations 1.21636 0.93319 1.01776 1.02803 1.22727 0.96703 1.00173 0.93692 0.87832 1.22237 0.83669 0.97864 0.97550 1.48508 1.12136 1.69373 1.06382 1.20045 0.84037 0.76014 0.86031 1.90711 1.82304 1.51582 1.14264 1.23516 0.96208 1.03934 1.06137 1.85355 1.05115 1.87306 1.05609 1.22820 0.98026 1.52720 0.94787 0.90949 1.24987 0.98479 0.94906 0.95156 1.70008 1.28256 1.45006 1.07087 0.86220 0.80757 0.79091 0.79428 1.19900 1.20795 1.19885 1.22469 0.97491 1.02672 0.80708 1.21986 0.88690 0.87016 0.98929 0.86633 1.45895 1.46229 1.33727 1.11477 1.17071 0.81101 0.81618 0.82225 1.90871 1.42183 1.60919 1.45963 1.20405 1.03376 1.01342 0.92054 1.21374 0.99468 0.95792 0.96355 1.20945 1.03367 1.02898 0.96480 1.22078 1.01294 0.93980 0.93776 1.42033 1.34093 1.25913 1.11669 0.74792 0.91686 0.92927 0.91539 0.92050 0.89834 0.89200 0.89370 0.92123 0.89993 0.90755 0.77041 0.83387 0.83805 0.81122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 8.91 37.16 0.33 -0.36 16 2 C -0.11 -0.82 3.51 -88.47 -0.31 -1.13 16 3 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.11 1.15 6.34 -2.50 -0.02 1.13 16 5 N -0.63 -8.72 3.33 -170.48 -0.57 -9.28 16 6 C 0.55 10.58 7.87 -10.99 -0.09 10.49 16 7 O -0.51 -11.79 16.12 5.55 0.09 -11.70 16 8 C -0.15 -3.09 5.35 36.01 0.19 -2.90 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.54 -15.47 9.50 30.94 0.29 -15.17 16 11 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 12 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 13 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 14 Si 0.92 21.68 29.55 -169.99 -5.02 16.66 16 15 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 C 0.09 1.05 6.23 -3.06 -0.02 1.03 16 19 C 0.14 1.20 3.10 -66.10 -0.20 1.00 16 20 H 0.12 1.04 7.55 -51.93 -0.39 0.64 16 21 N -0.72 -5.72 4.43 -53.33 -0.24 -5.95 16 22 C 0.59 6.24 7.79 -12.85 -0.10 6.14 16 23 O -0.52 -7.40 16.53 5.19 0.09 -7.31 16 24 C -0.06 -0.55 7.06 -81.98 -0.58 -1.12 16 25 C -0.10 -0.98 10.65 -39.11 -0.42 -1.40 16 26 C -0.21 -1.57 10.81 -39.98 -0.43 -2.00 16 27 C 0.02 0.14 11.89 -16.91 -0.20 -0.06 16 28 N -0.54 -3.26 5.99 -9.39 -0.06 -3.32 16 29 H 0.42 1.33 8.19 -40.82 -0.33 1.00 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.21 6.40 -51.93 -0.33 -0.12 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.57 8.03 -51.93 -0.42 0.16 16 34 H 0.08 0.97 8.04 -51.93 -0.42 0.55 16 35 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 36 H 0.09 1.76 8.14 -51.92 -0.42 1.33 16 37 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.94 8.04 -51.93 -0.42 0.52 16 40 H 0.39 2.26 6.21 -40.82 -0.25 2.00 16 41 H 0.15 1.40 8.06 -52.49 -0.42 0.97 16 42 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 43 H 0.17 0.41 8.06 -52.49 -0.42 -0.01 16 LS Contribution 377.14 15.07 5.68 5.68 Total: -1.00 -37.75 377.14 -9.06 -46.81 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.91 Total: 0.25 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -1.64 Total: -2.32 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: -0.13 Total: -44.20 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: 0.18 Total: -19.01 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.75 -9.06 -46.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071655889.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.075 kcal (2) G-P(sol) polarization free energy of solvation -37.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds