Wall clock time and date at job start Tue Mar 31 2020 20:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.89041 * 2 1 4 4 C 1.54912 * 111.00317 * 236.12364 * 2 1 3 5 5 N 1.47471 * 104.81180 * 204.94518 * 4 2 1 6 6 C 1.34773 * 125.63533 * 204.04570 * 5 4 2 7 7 O 1.21285 * 119.99301 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00490 * 179.97438 * 6 5 4 9 9 S 1.80996 * 109.47046 * 180.02562 * 8 6 5 10 10 C 1.76206 * 99.99893 * 180.02562 * 9 8 6 11 11 H 1.07994 * 119.99655 * 359.97438 * 10 9 8 12 12 C 1.38793 * 120.00020 * 179.97438 * 10 9 8 13 13 N 1.31626 * 120.00029 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99872 * 179.97438 * 12 10 9 15 15 H 1.48492 * 109.47298 * 60.00258 * 14 12 10 16 16 H 1.48504 * 109.47192 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46960 * 300.00071 * 14 12 10 18 18 C 1.47028 * 108.71990 * 24.07002 * 5 4 2 19 19 C 1.54319 * 107.27161 * 358.97693 * 18 5 4 20 20 H 1.09005 * 110.87619 * 219.37370 * 19 18 5 21 21 N 1.46501 * 110.72289 * 96.16774 * 19 18 5 22 22 C 1.34771 * 119.99850 * 91.48001 * 21 19 18 23 23 O 1.21699 * 120.00195 * 359.97438 * 22 21 19 24 24 C 1.46683 * 119.99886 * 179.97438 * 22 21 19 25 25 C 1.37875 * 126.22983 * 179.68781 * 24 22 21 26 26 C 1.39841 * 107.07931 * 179.84943 * 25 24 22 27 27 C 1.35448 * 107.86649 * 0.41663 * 26 25 24 28 28 N 1.35536 * 108.87171 * 359.74220 * 27 26 25 29 29 H 0.96998 * 125.67859 * 180.02562 * 28 27 26 30 30 H 1.09002 * 109.47153 * 299.29483 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.29674 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.29655 * 1 2 3 33 33 H 1.08997 * 110.37032 * 323.75124 * 4 2 1 34 34 H 1.09000 * 110.36843 * 86.07702 * 4 2 1 35 35 H 1.08994 * 109.46957 * 300.00499 * 8 6 5 36 36 H 1.09003 * 109.46557 * 60.00593 * 8 6 5 37 37 H 0.97007 * 119.99963 * 179.97438 * 13 12 10 38 38 H 1.08998 * 109.88565 * 239.55552 * 18 5 4 39 39 H 1.09002 * 110.00739 * 118.46416 * 18 5 4 40 40 H 0.97002 * 120.00069 * 271.47639 * 21 19 18 41 41 H 1.07994 * 126.45843 * 359.96421 * 25 24 22 42 42 H 1.08004 * 126.06567 * 180.17892 * 26 25 24 43 43 H 1.08001 * 125.56781 * 179.70505 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0852 -0.8061 -1.2007 5 7 3.4272 -1.2433 -0.7731 6 6 4.4476 -1.5624 -1.5936 7 8 4.3008 -1.5008 -2.7959 8 6 5.7712 -1.9948 -1.0172 9 16 6.9277 -2.3511 -2.3631 10 6 8.3475 -2.8193 -1.4304 11 1 8.3087 -2.8192 -0.3512 12 6 9.5157 -3.1882 -2.0828 13 7 9.5631 -3.1878 -3.3982 14 14 11.0211 -3.6839 -1.0941 15 1 10.6938 -4.8617 -0.2511 16 1 12.1295 -4.0298 -2.0198 17 1 11.4369 -2.5535 -0.2253 18 6 3.4675 -1.2738 0.6964 19 6 2.0862 -0.8076 1.2024 20 1 2.1892 -0.1699 2.0805 21 7 1.2269 -1.9570 1.4968 22 6 1.2062 -2.4826 2.7376 23 8 1.9017 -2.0027 3.6134 24 6 0.3454 -3.6331 3.0325 25 6 0.2288 -4.2732 4.2480 26 6 -0.6982 -5.3068 4.0806 27 6 -1.1152 -5.2863 2.7921 28 7 -0.4885 -4.2740 2.1445 29 1 -0.6081 -4.0398 1.2108 30 1 -0.3633 0.5028 0.8962 31 1 -0.3633 -1.0276 -0.0126 32 1 -0.3634 0.5247 -0.8836 33 1 1.4519 -1.6698 -1.4032 34 1 2.1559 -0.1711 -2.0838 35 1 6.1741 -1.1965 -0.3940 36 1 5.6290 -2.8908 -0.4131 37 1 10.3797 -3.4452 -3.8542 38 1 4.2426 -0.5993 1.0601 39 1 3.6663 -2.2880 1.0430 40 1 0.6728 -2.3397 0.7986 41 1 0.7530 -4.0224 5.1583 42 1 -1.0211 -6.0008 4.8426 43 1 -1.8299 -5.9662 2.3523 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071655889.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:59 Heat of formation + Delta-G solvation = -46.828538 kcal Electronic energy + Delta-G solvation = -26227.484289 eV Core-core repulsion = 22398.608215 eV Total energy + Delta-G solvation = -3828.876074 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.29142 -41.43493 -40.12668 -38.68112 -35.36252 -34.62467 -33.67654 -31.98555 -31.00231 -30.84073 -29.40103 -27.79227 -26.99452 -24.80869 -23.53852 -21.69222 -21.19731 -20.99466 -20.79056 -20.09674 -19.58929 -18.09317 -17.79537 -16.91756 -16.86616 -16.75664 -16.56379 -16.18490 -15.70480 -15.46953 -15.17949 -14.88635 -14.69617 -14.58761 -14.50424 -14.17836 -13.85397 -13.63143 -13.49269 -13.44121 -13.24042 -13.19081 -13.18085 -12.90038 -12.68739 -12.45417 -12.02809 -11.82742 -11.74393 -11.31705 -11.16547 -11.08715 -10.39472 -10.34998 -9.95283 -9.80047 -9.19114 -8.72296 -8.38274 -6.17339 0.43850 1.19140 1.40987 1.41425 1.47619 1.52146 1.83295 1.90864 2.02922 2.23430 2.23955 2.33357 2.95683 3.09106 3.30389 3.41620 3.72457 3.81632 3.85841 4.10154 4.14525 4.25127 4.33718 4.37132 4.42097 4.42379 4.50739 4.53868 4.64278 4.70278 4.73943 4.98553 5.09028 5.11907 5.18911 5.26712 5.30416 5.36417 5.37637 5.73536 5.92751 6.15776 6.24208 6.36007 6.58720 7.02012 7.02840 7.05117 8.70800 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012292 B = 0.002650 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.440878 B =10564.122397 C =11897.686097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.111 0.889 4 C 0.102 3.898 5 N -0.613 5.613 6 C 0.549 3.451 7 O -0.560 6.560 8 C -0.124 4.124 9 S -0.142 6.142 10 C -0.550 4.550 11 H 0.079 0.921 12 C 0.016 3.984 13 N -0.909 5.909 14 Si 0.998 3.002 15 H -0.263 1.263 16 H -0.275 1.275 17 H -0.262 1.262 18 C 0.085 3.915 19 C 0.147 3.853 20 H 0.118 0.882 21 N -0.706 5.706 22 C 0.592 3.408 23 O -0.568 6.568 24 C -0.083 4.083 25 C -0.127 4.127 26 C -0.232 4.232 27 C 0.045 3.955 28 N -0.528 5.528 29 H 0.430 0.570 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.273 0.727 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.408 0.592 41 H 0.135 0.865 42 H 0.158 0.842 43 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.903 1.015 13.731 31.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.114 4.114 3 H 0.129 0.871 4 C -0.020 4.020 5 N -0.348 5.348 6 C 0.338 3.662 7 O -0.438 6.438 8 C -0.275 4.275 9 S 0.085 5.915 10 C -0.698 4.698 11 H 0.097 0.903 12 C -0.189 4.189 13 N -0.546 5.546 14 Si 0.819 3.181 15 H -0.188 1.188 16 H -0.200 1.200 17 H -0.187 1.187 18 C -0.039 4.039 19 C 0.041 3.959 20 H 0.136 0.864 21 N -0.358 5.358 22 C 0.382 3.618 23 O -0.447 6.447 24 C -0.196 4.196 25 C -0.154 4.154 26 C -0.255 4.255 27 C -0.092 4.092 28 N -0.125 5.125 29 H 0.269 0.731 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.245 0.755 41 H 0.153 0.847 42 H 0.176 0.824 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -27.456 1.499 12.194 30.079 hybrid contribution 1.262 -0.537 0.915 1.649 sum -26.193 0.962 13.109 29.306 Atomic orbital electron populations 1.21651 0.90999 1.02954 1.03628 1.22675 0.98352 0.99582 0.90772 0.87080 1.22568 0.81845 0.98923 0.98648 1.48372 1.12248 1.67074 1.07126 1.19647 0.84474 0.76389 0.85736 1.90691 1.83059 1.54049 1.16020 1.23323 0.95821 1.04867 1.03468 1.85463 1.07685 1.87818 1.10545 1.23145 0.98536 1.52997 0.95106 0.90274 1.26111 1.02010 0.94480 0.96312 1.70164 1.29364 1.45938 1.09097 0.85017 0.76113 0.79137 0.77825 1.18758 1.20034 1.18699 1.22678 0.99806 1.02441 0.78983 1.21898 0.87306 0.87230 0.99445 0.86370 1.45734 1.45742 1.33250 1.11121 1.17272 0.80651 0.81651 0.82267 1.90843 1.44149 1.62383 1.47367 1.20191 1.04768 1.01820 0.92817 1.21538 1.00422 0.97062 0.96391 1.21225 1.03398 1.02907 0.97989 1.22718 1.00213 0.93148 0.93091 1.42020 1.33023 1.25398 1.12093 0.73056 0.91025 0.91635 0.90568 0.90273 0.90844 0.87857 0.88341 0.91843 0.89572 0.91720 0.75488 0.84714 0.82395 0.77183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.88 8.91 71.98 0.64 -0.24 16 2 C -0.09 -1.12 3.51 -9.40 -0.03 -1.15 16 3 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 4 C 0.10 1.94 6.34 86.85 0.55 2.49 16 5 N -0.61 -16.52 3.33 -811.67 -2.70 -19.22 16 6 C 0.55 21.29 7.87 87.66 0.69 21.98 16 7 O -0.56 -26.32 16.12 -3.05 -0.05 -26.37 16 8 C -0.12 -5.25 5.35 71.24 0.38 -4.86 16 9 S -0.14 -8.10 20.57 -56.49 -1.16 -9.26 16 10 C -0.55 -32.24 9.50 67.95 0.65 -31.60 16 11 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 12 C 0.02 0.92 5.49 84.86 0.47 1.39 16 13 N -0.91 -56.39 13.22 21.65 0.29 -56.10 16 14 Si 1.00 44.41 29.55 68.60 2.03 46.44 16 15 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 16 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 18 C 0.08 1.86 6.23 86.73 0.54 2.40 16 19 C 0.15 2.27 3.10 46.18 0.14 2.41 16 20 H 0.12 1.92 7.55 -2.38 -0.02 1.90 16 21 N -0.71 -9.83 4.43 -440.86 -1.95 -11.79 16 22 C 0.59 12.02 7.79 86.45 0.67 12.69 16 23 O -0.57 -16.20 16.53 -4.34 -0.07 -16.28 16 24 C -0.08 -1.45 7.06 40.35 0.28 -1.16 16 25 C -0.13 -2.39 10.65 22.57 0.24 -2.15 16 26 C -0.23 -3.01 10.81 22.01 0.24 -2.78 16 27 C 0.05 0.37 11.89 83.48 0.99 1.36 16 28 N -0.53 -4.94 5.99 -183.62 -1.10 -6.04 16 29 H 0.43 1.29 8.19 -92.71 -0.76 0.53 16 30 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.27 6.40 -2.39 -0.02 0.25 16 32 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 33 H 0.08 1.27 8.03 -2.39 -0.02 1.25 16 34 H 0.07 1.62 8.04 -2.39 -0.02 1.60 16 35 H 0.10 4.06 8.14 -2.40 -0.02 4.04 16 36 H 0.10 3.94 8.14 -2.39 -0.02 3.92 16 37 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 38 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 39 H 0.06 1.58 8.04 -2.39 -0.02 1.57 16 40 H 0.41 3.48 6.21 -92.71 -0.58 2.91 16 41 H 0.13 2.74 8.06 -2.91 -0.02 2.71 16 42 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 43 H 0.21 -0.03 8.06 -2.91 -0.02 -0.05 16 Total: -1.00 -86.08 377.14 1.44 -84.64 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -0.29 Total: 13.19 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 6.45 Total: 0.78 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -5.47 Total: -93.14 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -0.12 Total: -42.64 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: -8.10 SS G_CDS: -1.16 Total: -9.26 kcal Total: -86.08 1.44 -84.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071655889.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.809 kcal (2) G-P(sol) polarization free energy of solvation -86.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds