Wall clock time and date at job start Tue Mar 31 2020 20:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 110.77543 * 2 1 4 4 C 1.54320 * 110.71646 * 123.23508 * 2 1 3 5 5 N 1.47018 * 107.27208 * 140.55517 * 4 2 1 6 6 C 1.34777 * 125.65319 * 181.01939 * 5 4 2 7 7 O 1.21278 * 119.99854 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00161 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.47178 * 180.02562 * 8 6 5 10 10 C 1.76198 * 100.00092 * 180.02562 * 9 8 6 11 11 H 1.08004 * 120.00019 * 0.02562 * 10 9 8 12 12 C 1.38795 * 119.99810 * 179.97438 * 10 9 8 13 13 N 1.31626 * 120.00234 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99664 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47169 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47114 * 120.00091 * 14 12 10 17 17 H 1.48505 * 109.46890 * 239.99700 * 14 12 10 18 18 C 1.47423 * 108.69955 * 1.28997 * 5 4 2 19 19 C 1.55123 * 104.72450 * 335.54881 * 18 5 4 20 20 H 1.09002 * 110.91127 * 155.27554 * 19 18 5 21 21 N 1.46505 * 111.19392 * 279.19325 * 19 18 5 22 22 C 1.34771 * 120.00026 * 267.18427 * 21 19 18 23 23 O 1.21630 * 119.99721 * 359.97438 * 22 21 19 24 24 C 1.47260 * 120.00005 * 179.97438 * 22 21 19 25 25 C 1.46686 * 126.94411 * 359.68635 * 24 22 21 26 26 C 1.34484 * 106.33459 * 179.88622 * 25 24 22 27 27 N 1.36443 * 108.85609 * 0.37740 * 26 25 24 28 28 H 0.97002 * 124.85203 * 179.76353 * 27 26 25 29 29 C 1.34663 * 110.29849 * 359.75016 * 27 26 25 30 30 H 1.09000 * 109.47281 * 298.22161 * 1 2 3 31 31 H 1.08999 * 109.46817 * 58.21581 * 1 2 3 32 32 H 1.09000 * 109.46973 * 178.21711 * 1 2 3 33 33 H 1.09008 * 109.88271 * 21.14102 * 4 2 1 34 34 H 1.09004 * 110.01499 * 260.04974 * 4 2 1 35 35 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 36 36 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 37 37 H 0.97005 * 119.99806 * 179.97438 * 13 12 10 38 38 H 1.09003 * 110.37092 * 94.48013 * 18 5 4 39 39 H 1.08999 * 110.36866 * 216.79994 * 18 5 4 40 40 H 0.96997 * 119.99462 * 87.18790 * 21 19 18 41 41 H 1.08005 * 126.83187 * 0.02562 * 25 24 22 42 42 H 1.08000 * 125.57065 * 180.15766 * 26 25 24 43 43 H 1.08005 * 125.80070 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7911 1.2073 5 7 3.2444 -1.5507 0.7392 6 6 3.9922 -2.3835 1.4900 7 8 3.7191 -2.5563 2.6589 8 6 5.1678 -3.1001 0.8770 9 16 5.9627 -4.1367 2.1298 10 6 7.2638 -4.8351 1.1685 11 1 7.3674 -4.5703 0.1266 12 6 8.1560 -5.7248 1.7506 13 7 8.0306 -6.0463 3.0208 14 14 9.5358 -6.4646 0.7316 15 1 9.4587 -5.9451 -0.6574 16 1 10.8446 -6.0941 1.3273 17 1 9.4004 -7.9434 0.7147 18 6 3.4666 -1.2456 -0.6859 19 6 2.0790 -0.7955 -1.2137 20 1 2.1850 -0.1519 -2.0870 21 7 1.2272 -1.9489 -1.5144 22 6 1.2026 -2.4619 -2.7604 23 8 1.8874 -1.9670 -3.6354 24 6 0.3468 -3.6216 -3.0625 25 6 -0.5295 -4.3375 -2.1291 26 6 -1.1161 -5.3185 -2.8379 27 7 -0.6633 -5.2646 -4.1238 28 1 -0.9340 -5.8691 -4.8326 29 6 0.2129 -4.2523 -4.2686 30 1 -0.3634 0.4860 0.9055 31 1 -0.3633 0.5413 -0.8736 32 1 -0.3633 -1.0272 -0.0320 33 1 1.3128 -1.4758 1.5776 34 1 2.3735 -0.1043 1.9997 35 1 5.8839 -2.3688 0.5022 36 1 4.8228 -3.7258 0.0537 37 1 8.6541 -6.6684 3.4274 38 1 4.1947 -0.4415 -0.7927 39 1 3.8032 -2.1362 -1.2166 40 1 0.6808 -2.3432 -0.8166 41 1 -0.6763 -4.1189 -1.0817 42 1 -1.8265 -6.0343 -2.4513 43 1 0.7228 -3.9838 -5.1821 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071657567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:07 Heat of formation + Delta-G solvation = -21.403374 kcal Electronic energy + Delta-G solvation = -26453.293016 eV Core-core repulsion = 22625.519460 eV Total energy + Delta-G solvation = -3827.773556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.38361 -40.35226 -38.83608 -37.36985 -34.00648 -32.66997 -32.39653 -31.28395 -29.48640 -29.41238 -28.77431 -26.11388 -25.37508 -23.98353 -22.46417 -21.01062 -20.08401 -20.02533 -19.25836 -19.03221 -17.63151 -16.71729 -16.66551 -16.13544 -15.52010 -15.20664 -14.78064 -14.72213 -14.40545 -14.24675 -14.14031 -13.92967 -13.68553 -13.52513 -13.32833 -13.12251 -12.91242 -12.53817 -12.37772 -12.33843 -12.27412 -11.87748 -11.49493 -11.19368 -11.04287 -11.00694 -10.95629 -10.72165 -10.03572 -9.77249 -9.45281 -9.26543 -9.08944 -9.04177 -8.65329 -8.40332 -8.19316 -6.46458 -6.18648 -3.88679 1.56655 2.15830 2.80194 2.95389 3.10800 3.23972 3.24773 3.29098 3.34322 3.43547 3.66356 4.12445 4.23970 4.40155 4.60369 4.63212 4.83212 4.90830 4.99962 5.06322 5.13687 5.14370 5.16647 5.31367 5.42154 5.47098 5.55931 5.58454 5.64344 5.69420 5.75397 5.79988 5.83204 5.94646 6.00408 6.20587 6.35799 6.42363 6.47014 6.60517 7.10796 7.46401 7.63559 7.69836 8.21794 8.39199 8.60282 9.27010 10.88872 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.009960 B = 0.003167 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.543178 B = 8837.688239 C =10526.000894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 H 0.100 0.900 4 C 0.111 3.889 5 N -0.624 5.624 6 C 0.549 3.451 7 O -0.517 6.517 8 C -0.146 4.146 9 S -0.061 6.061 10 C -0.533 4.533 11 H 0.073 0.927 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.089 3.911 19 C 0.137 3.863 20 H 0.113 0.887 21 N -0.712 5.712 22 C 0.595 3.405 23 O -0.553 6.553 24 C -0.236 4.236 25 C -0.168 4.168 26 C -0.016 4.016 27 N -0.554 5.554 28 H 0.418 0.582 29 C 0.077 3.923 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.267 0.733 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.402 0.598 41 H 0.144 0.856 42 H 0.169 0.831 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.804 8.308 -14.224 27.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.130 4.130 3 H 0.118 0.882 4 C -0.013 4.013 5 N -0.362 5.362 6 C 0.338 3.662 7 O -0.391 6.391 8 C -0.297 4.297 9 S 0.166 5.834 10 C -0.681 4.681 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.504 5.504 14 Si 0.744 3.256 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.206 1.206 18 C -0.036 4.036 19 C 0.031 3.969 20 H 0.131 0.869 21 N -0.363 5.363 22 C 0.384 3.616 23 O -0.432 6.432 24 C -0.246 4.246 25 C -0.193 4.193 26 C -0.144 4.144 27 N -0.149 5.149 28 H 0.255 0.745 29 C -0.060 4.060 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.238 0.762 41 H 0.162 0.838 42 H 0.187 0.813 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -21.652 8.141 -12.957 26.513 hybrid contribution 0.902 -0.832 -1.900 2.261 sum -20.750 7.309 -14.856 26.546 Atomic orbital electron populations 1.21696 0.93344 1.02262 1.02395 1.22565 0.96975 0.99819 0.93677 0.88213 1.21959 0.88326 0.94700 0.96272 1.48481 1.30623 1.45967 1.11121 1.20005 0.82691 0.77707 0.85786 1.90703 1.69893 1.62497 1.15985 1.23507 0.97832 1.02846 1.05504 1.85347 1.33612 1.52236 1.12241 1.22910 1.15194 1.31238 0.98797 0.90896 1.24981 0.97630 0.95705 0.95237 1.70031 1.36585 1.32824 1.10910 0.86126 0.80805 0.78770 0.79873 1.19583 1.20549 1.20587 1.22819 0.97061 1.01964 0.81737 1.22086 0.89211 0.87505 0.98066 0.86929 1.45660 1.46374 1.32840 1.11452 1.17371 0.80506 0.81880 0.81808 1.90775 1.44000 1.61873 1.46576 1.20323 1.07181 1.02229 0.94880 1.22068 1.00281 0.97853 0.99055 1.21803 1.04992 1.03564 0.84036 1.41665 1.35338 1.26740 1.11109 0.74534 1.21848 0.94632 0.89916 0.99555 0.91862 0.91873 0.92353 0.91496 0.91266 0.89332 0.89399 0.92284 0.90276 0.89864 0.76203 0.83791 0.81331 0.80556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 8.80 37.16 0.33 -0.57 16 2 C -0.11 -0.89 3.42 -88.79 -0.30 -1.20 16 3 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 4 C 0.11 1.27 6.45 -3.07 -0.02 1.25 16 5 N -0.62 -9.19 3.32 -170.38 -0.57 -9.75 16 6 C 0.55 10.94 7.87 -10.98 -0.09 10.85 16 7 O -0.52 -12.17 16.19 5.56 0.09 -12.08 16 8 C -0.15 -3.16 5.16 36.01 0.19 -2.97 16 9 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 10 C -0.53 -15.58 9.50 30.94 0.29 -15.28 16 11 H 0.07 2.04 7.80 -52.48 -0.41 1.63 16 12 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 13 N -0.87 -26.54 13.22 55.49 0.73 -25.80 16 14 Si 0.92 21.84 29.55 -169.99 -5.02 16.82 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 18 C 0.09 1.09 6.41 -2.41 -0.02 1.07 16 19 C 0.14 1.36 3.18 -65.67 -0.21 1.15 16 20 H 0.11 1.11 7.54 -51.93 -0.39 0.72 16 21 N -0.71 -7.33 4.52 -52.74 -0.24 -7.57 16 22 C 0.60 7.37 7.81 -12.60 -0.10 7.27 16 23 O -0.55 -8.47 16.55 5.25 0.09 -8.38 16 24 C -0.24 -2.53 6.29 -103.35 -0.65 -3.18 16 25 C -0.17 -1.49 10.56 -37.50 -0.40 -1.88 16 26 C -0.02 -0.11 11.89 -16.83 -0.20 -0.31 16 27 N -0.55 -3.40 5.90 -12.85 -0.08 -3.47 16 28 H 0.42 1.14 8.96 -40.82 -0.37 0.77 16 29 C 0.08 0.67 11.69 -16.84 -0.20 0.48 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.38 6.34 -51.93 -0.33 0.05 16 33 H 0.07 0.78 7.82 -51.92 -0.41 0.37 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 1.80 8.14 -51.92 -0.42 1.37 16 36 H 0.09 1.82 7.85 -51.91 -0.41 1.41 16 37 H 0.27 7.56 8.31 -40.82 -0.34 7.23 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.16 7.48 -51.93 -0.39 0.77 16 40 H 0.40 3.69 6.25 -40.82 -0.26 3.44 16 41 H 0.14 1.07 7.70 -52.48 -0.40 0.67 16 42 H 0.17 0.68 8.06 -52.49 -0.42 0.25 16 43 H 0.18 1.30 8.06 -52.48 -0.42 0.87 16 LS Contribution 376.69 15.07 5.68 5.68 Total: -1.00 -38.49 376.69 -8.87 -47.36 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.87 Total: 2.41 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -1.46 Total: -1.29 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: -0.15 Total: -46.60 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: 0.18 Total: -20.46 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.49 -8.87 -47.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071657567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.952 kcal (2) G-P(sol) polarization free energy of solvation -38.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds