Wall clock time and date at job start Tue Mar 31 2020 20:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.88689 * 2 1 4 4 C 1.55133 * 110.93643 * 124.07987 * 2 1 3 5 5 N 1.47426 * 104.71908 * 155.28702 * 4 2 1 6 6 C 1.34777 * 125.64311 * 155.81228 * 5 4 2 7 7 O 1.21283 * 120.00463 * 359.72123 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.44245 * 6 5 4 9 9 S 1.80997 * 109.47151 * 180.27780 * 8 6 5 10 10 C 1.76196 * 100.00314 * 179.97438 * 9 8 6 11 11 H 1.08005 * 120.00018 * 0.02562 * 10 9 8 12 12 C 1.38799 * 120.00626 * 179.97438 * 10 9 8 13 13 N 1.31633 * 119.99674 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00584 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47012 * 89.99727 * 14 12 10 16 16 H 1.48501 * 109.47302 * 209.99797 * 14 12 10 17 17 H 1.48501 * 109.46788 * 330.00118 * 14 12 10 18 18 C 1.47016 * 108.70680 * 335.55056 * 5 4 2 19 19 C 1.54324 * 107.26889 * 1.28811 * 18 5 4 20 20 H 1.08998 * 110.72297 * 263.82648 * 19 18 5 21 21 N 1.46505 * 110.72082 * 140.55389 * 19 18 5 22 22 C 1.34783 * 119.99504 * 86.45398 * 21 19 18 23 23 O 1.21627 * 120.00341 * 359.97438 * 22 21 19 24 24 C 1.47266 * 119.99522 * 180.02562 * 22 21 19 25 25 C 1.46683 * 126.94519 * 359.67641 * 24 22 21 26 26 C 1.34482 * 106.33342 * 179.89635 * 25 24 22 27 27 N 1.36447 * 108.85822 * 0.37390 * 26 25 24 28 28 H 0.96996 * 124.85116 * 179.72521 * 27 26 25 29 29 C 1.34660 * 110.29554 * 359.75677 * 27 26 25 30 30 H 1.08999 * 109.47193 * 183.87678 * 1 2 3 31 31 H 1.09001 * 109.47513 * 303.87862 * 1 2 3 32 32 H 1.09004 * 109.47020 * 63.87792 * 1 2 3 33 33 H 1.08999 * 110.49931 * 36.44652 * 4 2 1 34 34 H 1.09000 * 110.33826 * 274.04936 * 4 2 1 35 35 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 36 36 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 37 37 H 0.97003 * 120.00297 * 179.97438 * 13 12 10 38 38 H 1.09004 * 109.88101 * 120.69990 * 18 5 4 39 39 H 1.08997 * 109.88649 * 241.71666 * 18 5 4 40 40 H 0.96995 * 120.00573 * 266.45397 * 21 19 18 41 41 H 1.08009 * 126.83290 * 0.02562 * 25 24 22 42 42 H 1.08002 * 125.57414 * 180.09540 * 26 25 24 43 43 H 1.08001 * 125.80267 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0843 -0.8119 1.2001 5 7 3.4279 -1.2423 0.7724 6 6 4.4489 -1.5604 1.5928 7 8 4.3025 -1.4991 2.7952 8 6 5.7705 -1.9983 1.0160 9 16 6.9257 -2.3603 2.3616 10 6 8.3433 -2.8344 1.4287 11 1 8.3044 -2.8337 0.3493 12 6 9.5103 -3.2076 2.0807 13 7 9.5582 -3.2070 3.3962 14 14 11.0134 -3.7095 1.0917 15 1 11.8459 -2.5116 0.8142 16 1 11.8084 -4.6964 1.8658 17 1 10.5806 -4.3195 -0.1912 18 6 3.4678 -1.2732 -0.6968 19 6 2.0861 -0.8075 -1.2025 20 1 1.4470 -1.6630 -1.4212 21 7 2.2277 0.0503 -2.3817 22 6 2.3011 -0.4996 -3.6101 23 8 2.2502 -1.7079 -3.7395 24 6 2.4441 0.3626 -4.7953 25 6 2.5151 1.8275 -4.8165 26 6 2.6455 2.1813 -6.1074 27 7 2.6514 1.0534 -6.8753 28 1 2.7304 1.0414 -7.8420 29 6 2.5312 -0.0406 -6.0994 30 1 -0.3633 -1.0253 0.0695 31 1 -0.3634 0.5728 0.8532 32 1 -0.3633 0.4525 -0.9227 33 1 1.4537 -1.6785 1.3986 34 1 2.1523 -0.1802 2.0858 35 1 5.6245 -2.8938 0.4118 36 1 6.1768 -1.2018 0.3928 37 1 10.3737 -3.4682 3.8520 38 1 4.2425 -0.5982 -1.0609 39 1 3.6684 -2.2877 -1.0411 40 1 2.2687 1.0138 -2.2785 41 1 2.4733 2.4902 -3.9646 42 1 2.7272 3.1929 -6.4765 43 1 2.5074 -1.0627 -6.4476 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071657568.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:09 Heat of formation + Delta-G solvation = -23.917775 kcal Electronic energy + Delta-G solvation = -25914.430392 eV Core-core repulsion = 22086.547803 eV Total energy + Delta-G solvation = -3827.882589 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.48153 -40.25663 -38.95123 -37.35609 -34.23030 -32.80701 -32.38673 -31.42529 -29.57700 -29.40630 -28.54960 -26.10785 -25.36670 -24.08625 -22.14206 -21.21737 -20.78249 -19.71990 -19.30475 -19.03766 -17.68415 -16.89826 -16.54209 -16.15412 -15.48716 -15.19783 -15.07833 -14.76441 -14.32085 -14.27194 -14.14340 -13.87097 -13.70081 -13.59974 -13.44199 -13.26973 -12.87824 -12.62373 -12.47160 -12.37895 -12.19464 -11.78927 -11.55052 -11.38604 -11.02981 -10.98458 -10.90147 -10.71955 -10.11175 -9.77582 -9.50058 -9.31396 -9.15135 -9.02557 -8.75486 -8.46178 -8.19088 -6.45734 -6.17590 -3.87801 1.46633 2.03594 2.65434 2.91207 3.10091 3.18735 3.25607 3.30799 3.33895 3.35381 3.69091 4.09878 4.24643 4.40887 4.51427 4.63632 4.74682 4.80878 4.97127 5.03325 5.08554 5.14843 5.17237 5.17986 5.43906 5.44761 5.53909 5.59613 5.61256 5.69371 5.76976 5.78948 5.82738 5.94764 6.00653 6.21464 6.27263 6.32181 6.44557 6.49150 6.99549 7.36871 7.63992 7.69348 8.13349 8.39811 8.59522 9.27741 10.89906 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.010600 B = 0.002708 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.811930 B =10336.221624 C =12473.897267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 H 0.091 0.909 4 C 0.113 3.887 5 N -0.625 5.625 6 C 0.550 3.450 7 O -0.515 6.515 8 C -0.147 4.147 9 S -0.061 6.061 10 C -0.533 4.533 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.092 3.908 19 C 0.142 3.858 20 H 0.106 0.894 21 N -0.716 5.716 22 C 0.593 3.407 23 O -0.548 6.548 24 C -0.236 4.236 25 C -0.170 4.170 26 C -0.017 4.017 27 N -0.554 5.554 28 H 0.419 0.581 29 C 0.078 3.922 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.268 0.732 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.402 0.598 41 H 0.145 0.855 42 H 0.169 0.831 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.034 12.810 -20.792 31.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 H 0.109 0.891 4 C -0.010 4.010 5 N -0.363 5.363 6 C 0.339 3.661 7 O -0.390 6.390 8 C -0.297 4.297 9 S 0.166 5.834 10 C -0.682 4.682 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.504 5.504 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.197 1.197 18 C -0.033 4.033 19 C 0.037 3.963 20 H 0.124 0.876 21 N -0.367 5.367 22 C 0.382 3.618 23 O -0.426 6.426 24 C -0.246 4.246 25 C -0.194 4.194 26 C -0.145 4.145 27 N -0.149 5.149 28 H 0.255 0.745 29 C -0.059 4.059 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.237 0.763 41 H 0.163 0.837 42 H 0.186 0.814 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -20.087 12.000 -18.993 30.137 hybrid contribution 1.325 0.158 -2.501 2.835 sum -18.762 12.158 -21.494 31.013 Atomic orbital electron populations 1.21704 0.93118 1.02687 1.02298 1.22699 0.96776 0.99698 0.93894 0.89100 1.22250 0.83441 0.98198 0.97093 1.48424 1.12111 1.69447 1.06327 1.20014 0.84025 0.76044 0.86019 1.90707 1.82315 1.51704 1.14229 1.23514 0.96278 1.03914 1.06041 1.85352 1.05334 1.87027 1.05712 1.22866 0.98168 1.52323 0.94818 0.90940 1.24990 0.98461 0.94999 0.95150 1.70025 1.28122 1.45140 1.07071 0.86166 0.81300 0.78414 0.79617 1.20295 1.20759 1.19664 1.22404 0.97823 1.02541 0.80551 1.21991 0.95809 0.94307 0.84235 0.87574 1.45683 1.75553 1.10234 1.05258 1.17408 0.75116 0.86991 0.82289 1.90803 1.50831 1.14511 1.86458 1.20333 1.18103 0.93395 0.92780 1.22062 1.07631 0.93258 0.96449 1.21808 1.10067 0.91332 0.91270 1.41679 1.57356 1.05988 1.09847 0.74492 1.21882 1.01641 0.92236 0.90123 0.91980 0.91837 0.92020 0.91179 0.89895 0.89229 0.89369 0.92224 0.90969 0.90571 0.76292 0.83695 0.81362 0.80494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.31 37.16 0.35 -0.58 16 2 C -0.11 -0.94 3.26 -88.35 -0.29 -1.23 16 3 H 0.09 0.69 8.00 -51.93 -0.42 0.28 16 4 C 0.11 1.36 6.38 -2.41 -0.02 1.34 16 5 N -0.63 -9.56 3.32 -170.38 -0.57 -10.13 16 6 C 0.55 11.15 7.87 -10.98 -0.09 11.06 16 7 O -0.52 -12.29 16.12 5.55 0.09 -12.20 16 8 C -0.15 -3.20 5.35 36.01 0.19 -3.00 16 9 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 10 C -0.53 -15.63 9.50 30.94 0.29 -15.33 16 11 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 12 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 13 N -0.87 -26.65 13.22 55.49 0.73 -25.91 16 14 Si 0.92 21.89 29.55 -169.99 -5.02 16.87 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 18 C 0.09 1.18 6.23 -3.07 -0.02 1.17 16 19 C 0.14 1.43 2.70 -66.09 -0.18 1.25 16 20 H 0.11 1.17 7.60 -51.93 -0.39 0.77 16 21 N -0.72 -6.41 5.13 -53.15 -0.27 -6.69 16 22 C 0.59 6.69 7.81 -12.59 -0.10 6.59 16 23 O -0.55 -8.16 16.64 5.25 0.09 -8.07 16 24 C -0.24 -2.16 6.29 -103.35 -0.65 -2.81 16 25 C -0.17 -1.15 10.56 -37.50 -0.40 -1.54 16 26 C -0.02 -0.09 11.89 -16.83 -0.20 -0.29 16 27 N -0.55 -2.59 5.90 -12.85 -0.08 -2.67 16 28 H 0.42 0.58 8.96 -40.82 -0.37 0.22 16 29 C 0.08 0.58 11.69 -16.84 -0.20 0.38 16 30 H 0.06 0.42 8.07 -51.93 -0.42 0.01 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.80 7.99 -51.93 -0.41 0.39 16 34 H 0.08 1.05 8.03 -51.93 -0.42 0.64 16 35 H 0.09 1.86 8.14 -51.91 -0.42 1.43 16 36 H 0.09 1.80 8.14 -51.92 -0.42 1.37 16 37 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.07 0.93 8.03 -51.93 -0.42 0.52 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.40 2.63 7.64 -40.82 -0.31 2.32 16 41 H 0.15 0.70 7.70 -52.48 -0.40 0.29 16 42 H 0.17 0.36 8.06 -52.49 -0.42 -0.06 16 43 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 381.07 15.07 5.74 5.74 Total: -1.00 -38.82 381.07 -8.95 -47.78 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.06 Total: 0.17 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -1.39 Total: -0.97 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -0.18 Total: -45.39 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: 0.18 Total: -20.27 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.82 -8.95 -47.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071657568.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.859 kcal (2) G-P(sol) polarization free energy of solvation -38.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds