Wall clock time and date at job start Tue Mar 31 2020 20:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.89041 * 2 1 4 4 C 1.54912 * 111.00317 * 236.12364 * 2 1 3 5 5 N 1.47471 * 104.81180 * 204.94518 * 4 2 1 6 6 C 1.34773 * 125.63533 * 204.04570 * 5 4 2 7 7 O 1.21285 * 119.99301 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00490 * 179.97438 * 6 5 4 9 9 S 1.80996 * 109.47046 * 180.02562 * 8 6 5 10 10 C 1.76206 * 99.99893 * 180.02562 * 9 8 6 11 11 H 1.07994 * 119.99655 * 359.97438 * 10 9 8 12 12 C 1.38793 * 120.00020 * 179.97438 * 10 9 8 13 13 N 1.31626 * 120.00029 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99872 * 179.97438 * 12 10 9 15 15 H 1.48492 * 109.47154 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47294 * 120.00330 * 14 12 10 17 17 H 1.48501 * 109.47121 * 240.00415 * 14 12 10 18 18 C 1.47028 * 108.71990 * 24.07002 * 5 4 2 19 19 C 1.54319 * 107.27161 * 358.97693 * 18 5 4 20 20 H 1.08998 * 110.72273 * 219.44285 * 19 18 5 21 21 N 1.46501 * 110.72289 * 96.16774 * 19 18 5 22 22 C 1.34771 * 119.99850 * 91.48001 * 21 19 18 23 23 O 1.21628 * 120.00347 * 0.02562 * 22 21 19 24 24 C 1.47270 * 119.99930 * 179.97438 * 22 21 19 25 25 C 1.46690 * 126.94040 * 179.97438 * 24 22 21 26 26 C 1.34491 * 106.32893 * 179.97438 * 25 24 22 27 27 N 1.36446 * 108.85765 * 0.02562 * 26 25 24 28 28 H 0.96995 * 124.84897 * 180.02562 * 27 26 25 29 29 C 1.34660 * 110.29613 * 359.72562 * 27 26 25 30 30 H 1.09002 * 109.47153 * 299.29483 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.29674 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.29655 * 1 2 3 33 33 H 1.08997 * 110.37032 * 323.75124 * 4 2 1 34 34 H 1.09000 * 110.36843 * 86.07702 * 4 2 1 35 35 H 1.08994 * 109.46957 * 300.00499 * 8 6 5 36 36 H 1.09003 * 109.46557 * 60.00593 * 8 6 5 37 37 H 0.97007 * 119.99963 * 179.97438 * 13 12 10 38 38 H 1.08998 * 109.88565 * 239.55552 * 18 5 4 39 39 H 1.09002 * 110.00739 * 118.46416 * 18 5 4 40 40 H 0.97002 * 120.00069 * 271.47639 * 21 19 18 41 41 H 1.08000 * 126.83666 * 359.96776 * 25 24 22 42 42 H 1.07994 * 125.56514 * 180.02562 * 26 25 24 43 43 H 1.08002 * 125.79918 * 180.30760 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0852 -0.8061 -1.2007 5 7 3.4272 -1.2433 -0.7731 6 6 4.4476 -1.5624 -1.5936 7 8 4.3008 -1.5008 -2.7959 8 6 5.7712 -1.9948 -1.0172 9 16 6.9277 -2.3511 -2.3631 10 6 8.3475 -2.8193 -1.4304 11 1 8.3087 -2.8192 -0.3512 12 6 9.5157 -3.1882 -2.0828 13 7 9.5631 -3.1878 -3.3982 14 14 11.0211 -3.6839 -1.0941 15 1 10.7105 -3.6006 0.3556 16 1 11.4031 -5.0768 -1.4388 17 1 12.1462 -2.7686 -1.4131 18 6 3.4675 -1.2738 0.6964 19 6 2.0862 -0.8076 1.2024 20 1 2.1922 -0.1693 2.0796 21 7 1.2269 -1.9570 1.4968 22 6 1.2062 -2.4826 2.7376 23 8 1.9006 -2.0024 3.6132 24 6 0.3420 -3.6377 3.0336 25 6 0.2015 -4.3266 4.3211 26 6 -0.6899 -5.3146 4.1260 27 7 -1.1036 -5.2850 2.8261 28 1 -1.7469 -5.8966 2.4351 29 6 -0.4959 -4.2813 2.1652 30 1 -0.3633 0.5028 0.8962 31 1 -0.3633 -1.0276 -0.0126 32 1 -0.3634 0.5247 -0.8836 33 1 1.4519 -1.6698 -1.4032 34 1 2.1559 -0.1711 -2.0838 35 1 6.1741 -1.1965 -0.3940 36 1 5.6290 -2.8908 -0.4131 37 1 10.3797 -3.4452 -3.8542 38 1 4.2426 -0.5993 1.0601 39 1 3.6663 -2.2880 1.0430 40 1 0.6728 -2.3397 0.7986 41 1 0.7122 -4.0879 5.2423 42 1 -1.0236 -6.0166 4.8757 43 1 -0.6437 -4.0287 1.1256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071657569.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:12 Heat of formation + Delta-G solvation = -19.768503 kcal Electronic energy + Delta-G solvation = -26157.281248 eV Core-core repulsion = 22329.578585 eV Total energy + Delta-G solvation = -3827.702663 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.48311 -40.40311 -38.90735 -37.40202 -34.13067 -32.68196 -32.40125 -31.34509 -29.89974 -29.44416 -28.52764 -26.16837 -25.38587 -23.93718 -22.67072 -21.07034 -20.25639 -20.09840 -19.27170 -19.06171 -17.66069 -16.88406 -16.59113 -16.25926 -15.43377 -15.37703 -14.89982 -14.77462 -14.43484 -14.32942 -14.25767 -13.94522 -13.75133 -13.67102 -13.27518 -13.02315 -12.88669 -12.67521 -12.45522 -12.37449 -12.28738 -11.89337 -11.59810 -11.25822 -11.04249 -11.01614 -10.95549 -10.72186 -10.11211 -9.77827 -9.51390 -9.29079 -9.12911 -9.04604 -8.76195 -8.49470 -8.20617 -6.47535 -6.19143 -3.89454 1.42539 2.12049 2.77590 2.90843 3.02160 3.09168 3.24234 3.29200 3.34455 3.36019 3.64570 4.06393 4.23410 4.37206 4.49381 4.56334 4.66378 4.79067 4.96948 5.04914 5.06601 5.11627 5.16174 5.23241 5.35636 5.40643 5.53420 5.57022 5.66195 5.67996 5.69673 5.74748 5.80497 5.89088 5.97049 6.19450 6.25541 6.36403 6.42043 6.52271 7.00474 7.34614 7.63153 7.66753 8.14406 8.38838 8.56752 9.26567 10.88386 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012151 B = 0.002637 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.748613 B =10617.471715 C =11976.397960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.101 0.899 4 C 0.110 3.890 5 N -0.625 5.625 6 C 0.550 3.450 7 O -0.516 6.516 8 C -0.147 4.147 9 S -0.062 6.062 10 C -0.533 4.533 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.091 3.909 19 C 0.140 3.860 20 H 0.113 0.887 21 N -0.720 5.720 22 C 0.591 3.409 23 O -0.541 6.541 24 C -0.229 4.229 25 C -0.140 4.140 26 C -0.023 4.023 27 N -0.551 5.551 28 H 0.418 0.582 29 C 0.046 3.954 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.267 0.733 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.397 0.603 41 H 0.148 0.852 42 H 0.170 0.830 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.048 0.039 13.121 30.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.119 0.881 4 C -0.013 4.013 5 N -0.363 5.363 6 C 0.339 3.661 7 O -0.391 6.391 8 C -0.297 4.297 9 S 0.165 5.835 10 C -0.681 4.681 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.504 5.504 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.034 4.034 19 C 0.034 3.966 20 H 0.131 0.869 21 N -0.372 5.372 22 C 0.380 3.620 23 O -0.418 6.418 24 C -0.239 4.239 25 C -0.164 4.164 26 C -0.150 4.150 27 N -0.145 5.145 28 H 0.254 0.746 29 C -0.090 4.090 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.233 0.767 41 H 0.166 0.834 42 H 0.188 0.812 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -26.651 0.319 11.730 29.120 hybrid contribution 0.654 -0.978 1.501 1.907 sum -25.998 -0.659 13.231 29.178 Atomic orbital electron populations 1.21633 0.93323 1.01978 1.02577 1.22712 0.96724 1.00031 0.93833 0.88094 1.22235 0.83650 0.97896 0.97487 1.48502 1.12120 1.69219 1.06466 1.20021 0.84049 0.76047 0.86026 1.90706 1.82354 1.51717 1.14287 1.23511 0.96240 1.03948 1.06048 1.85351 1.05150 1.87293 1.05737 1.22906 0.97981 1.52356 0.94862 0.90855 1.24991 0.98492 0.94976 0.95150 1.70032 1.28037 1.45236 1.07075 0.86113 0.81330 0.78237 0.79821 1.19553 1.20587 1.20558 1.22488 0.97693 1.02624 0.80561 1.21909 0.88684 0.87353 0.98610 0.86937 1.45836 1.46182 1.33440 1.11753 1.17422 0.80951 0.81893 0.81700 1.90788 1.43071 1.61849 1.46121 1.20456 1.05695 1.02063 0.95729 1.21989 1.00627 0.96477 0.97337 1.21842 1.03089 1.03827 0.86268 1.41609 1.36118 1.26765 1.10002 0.74598 1.21929 0.97436 0.91625 0.98031 0.91776 0.92609 0.91768 0.91930 0.90002 0.89233 0.89352 0.92274 0.90247 0.90753 0.76707 0.83378 0.81232 0.81247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 8.91 37.16 0.33 -0.44 16 2 C -0.11 -0.89 3.51 -88.47 -0.31 -1.20 16 3 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 4 C 0.11 1.21 6.34 -2.50 -0.02 1.20 16 5 N -0.63 -9.07 3.33 -170.48 -0.57 -9.64 16 6 C 0.55 10.82 7.87 -10.99 -0.09 10.74 16 7 O -0.52 -12.04 16.12 5.55 0.09 -11.95 16 8 C -0.15 -3.14 5.35 36.01 0.19 -2.95 16 9 S -0.06 -1.72 20.57 -107.50 -2.21 -3.94 16 10 C -0.53 -15.52 9.50 30.94 0.29 -15.22 16 11 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 12 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 13 N -0.87 -26.53 13.22 55.49 0.73 -25.80 16 14 Si 0.92 21.84 29.55 -169.99 -5.02 16.82 16 15 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 C 0.09 1.11 6.23 -3.06 -0.02 1.09 16 19 C 0.14 1.33 3.09 -66.10 -0.20 1.12 16 20 H 0.11 1.12 7.55 -51.93 -0.39 0.73 16 21 N -0.72 -6.32 4.43 -53.15 -0.24 -6.55 16 22 C 0.59 6.79 7.81 -12.59 -0.10 6.69 16 23 O -0.54 -8.32 16.62 5.25 0.09 -8.23 16 24 C -0.23 -2.20 6.29 -103.35 -0.65 -2.85 16 25 C -0.14 -1.29 10.97 -37.50 -0.41 -1.70 16 26 C -0.02 -0.14 11.89 -16.82 -0.20 -0.34 16 27 N -0.55 -2.56 5.90 -12.85 -0.08 -2.64 16 28 H 0.42 0.55 8.96 -40.82 -0.37 0.19 16 29 C 0.05 0.28 11.40 -16.84 -0.19 0.09 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.26 6.40 -51.93 -0.33 -0.07 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.62 8.03 -51.93 -0.42 0.20 16 34 H 0.08 0.99 8.04 -51.93 -0.42 0.57 16 35 H 0.09 1.80 8.14 -51.92 -0.42 1.37 16 36 H 0.09 1.80 8.14 -51.92 -0.42 1.37 16 37 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 40 H 0.40 2.58 6.02 -40.82 -0.25 2.34 16 41 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.17 0.52 8.06 -52.49 -0.42 0.10 16 43 H 0.17 0.52 7.45 -52.49 -0.39 0.12 16 LS Contribution 377.27 15.07 5.69 5.69 Total: -1.00 -39.17 377.27 -8.89 -48.06 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -5.91 Total: -0.10 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -1.47 Total: -1.73 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: -0.14 Total: -44.62 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: 0.18 Total: -20.18 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -39.17 -8.89 -48.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071657569.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.295 kcal (2) G-P(sol) polarization free energy of solvation -39.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds