Wall clock time and date at job start Tue Mar 31 2020 20:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 110.64866 * 2 1 4 4 C 1.54329 * 110.71782 * 236.65863 * 2 1 3 5 5 N 1.47018 * 107.27173 * 219.44426 * 4 2 1 6 6 C 1.34778 * 125.64703 * 178.91015 * 5 4 2 7 7 O 1.21285 * 120.00000 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00079 * 180.02562 * 6 5 4 9 9 S 1.81006 * 109.46857 * 179.97438 * 8 6 5 10 10 C 1.76203 * 99.99777 * 179.97438 * 9 8 6 11 11 H 1.08006 * 119.99440 * 0.02562 * 10 9 8 12 12 C 1.38791 * 120.00340 * 179.97438 * 10 9 8 13 13 N 1.31634 * 119.99838 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00359 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46979 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47184 * 120.00110 * 14 12 10 17 17 H 1.48508 * 109.47153 * 240.00257 * 14 12 10 18 18 C 1.47461 * 108.72830 * 358.97879 * 5 4 2 19 19 C 1.54911 * 104.80781 * 24.06811 * 18 5 4 20 20 H 1.08997 * 111.00245 * 81.13763 * 19 18 5 21 21 N 1.46506 * 111.00638 * 204.95274 * 19 18 5 22 22 C 1.34777 * 119.99873 * 270.42196 * 21 19 18 23 23 O 1.21628 * 119.99665 * 359.97438 * 22 21 19 24 24 C 1.47256 * 119.99881 * 179.97438 * 22 21 19 25 25 C 1.46686 * 126.94443 * 359.68207 * 24 22 21 26 26 C 1.34490 * 106.33328 * 179.88663 * 25 24 22 27 27 N 1.36445 * 108.85491 * 0.37789 * 26 25 24 28 28 H 0.97004 * 124.85182 * 179.72324 * 27 26 25 29 29 C 1.34661 * 110.30147 * 359.74870 * 27 26 25 30 30 H 1.09000 * 109.47044 * 296.85735 * 1 2 3 31 31 H 1.08996 * 109.47563 * 56.85968 * 1 2 3 32 32 H 1.09000 * 109.47593 * 176.85998 * 1 2 3 33 33 H 1.08997 * 109.88313 * 338.86789 * 4 2 1 34 34 H 1.09002 * 109.88029 * 100.02793 * 4 2 1 35 35 H 1.08998 * 109.46853 * 299.99449 * 8 6 5 36 36 H 1.08996 * 109.47214 * 60.00059 * 8 6 5 37 37 H 0.96995 * 120.00337 * 179.97438 * 13 12 10 38 38 H 1.09002 * 110.34880 * 265.25678 * 18 5 4 39 39 H 1.08993 * 110.40823 * 142.91624 * 18 5 4 40 40 H 0.96995 * 120.00050 * 90.14310 * 21 19 18 41 41 H 1.08001 * 126.83281 * 0.02562 * 25 24 22 42 42 H 1.08002 * 125.57126 * 180.16148 * 26 25 24 43 43 H 1.08000 * 125.80317 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0759 -0.7934 -1.2059 5 7 3.2443 -1.5521 -0.7363 6 6 3.9913 -2.3873 -1.4853 7 8 3.7179 -2.5625 -2.6539 8 6 5.1663 -3.1035 -0.8708 9 16 5.9601 -4.1437 -2.1215 10 6 7.2607 -4.8411 -1.1588 11 1 7.3641 -4.5745 -0.1172 12 6 8.1515 -5.7336 -1.7385 13 7 8.0250 -6.0588 -3.0078 14 14 9.5298 -6.4735 -0.7177 15 1 9.4535 -5.9506 0.6701 16 1 9.3919 -7.9520 -0.6973 17 1 10.8394 -6.1067 -1.3142 18 6 3.4632 -1.2497 0.6902 19 6 2.0789 -0.7935 1.2151 20 1 1.4448 -1.6508 1.4407 21 7 2.2214 0.0736 2.3874 22 6 2.2517 -0.4634 3.6231 23 8 2.1602 -1.6679 3.7651 24 6 2.3955 0.4081 4.8013 25 6 2.5238 1.8693 4.8067 26 6 2.6272 2.2352 6.0968 27 7 2.5809 1.1170 6.8773 28 1 2.6399 1.1140 7.8455 29 6 2.4424 0.0180 6.1115 30 1 -0.3633 0.4643 0.9168 31 1 -0.3634 0.5618 -0.8604 32 1 -0.3634 -1.0261 -0.0563 33 1 1.3128 -1.4786 -1.5750 34 1 2.3740 -0.1060 -1.9976 35 1 5.8831 -2.3720 -0.4979 36 1 4.8210 -3.7270 -0.0462 37 1 8.6478 -6.6823 -3.4131 38 1 4.1935 -0.4479 0.8000 39 1 3.7951 -2.1417 1.2213 40 1 2.2981 1.0339 2.2739 41 1 2.5313 2.5218 3.9461 42 1 2.7333 3.2482 6.4560 43 1 2.3787 -0.9985 6.4707 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071657570.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:14 Heat of formation + Delta-G solvation = -23.971208 kcal Electronic energy + Delta-G solvation = -25890.731276 eV Core-core repulsion = 22062.846370 eV Total energy + Delta-G solvation = -3827.884906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.49207 -40.25048 -38.95266 -37.36496 -34.24212 -32.80995 -32.37789 -31.43793 -29.58904 -29.39615 -28.56256 -26.09816 -25.35927 -24.09047 -22.14861 -21.21368 -20.78088 -19.74592 -19.33705 -19.05944 -17.66336 -16.84818 -16.61931 -16.15864 -15.36904 -15.22770 -14.95265 -14.75629 -14.38231 -14.26290 -14.19937 -13.90446 -13.71085 -13.52733 -13.46398 -13.34063 -12.96038 -12.61593 -12.48586 -12.32538 -12.23242 -11.77037 -11.50731 -11.37873 -11.02902 -10.96547 -10.87982 -10.70596 -10.11628 -9.75757 -9.49386 -9.31871 -9.16334 -9.02479 -8.77127 -8.45507 -8.17522 -6.44659 -6.16807 -3.86860 1.45988 2.01806 2.63238 2.90280 3.10260 3.19355 3.25573 3.31966 3.33462 3.37134 3.70647 4.12735 4.25445 4.42424 4.49756 4.59552 4.74053 4.79635 4.97690 5.02281 5.07819 5.14451 5.16401 5.18445 5.42271 5.46449 5.55199 5.59336 5.60730 5.69743 5.75906 5.81058 5.82752 5.96975 6.01558 6.22511 6.24710 6.30162 6.45679 6.48946 6.98207 7.36450 7.65251 7.69184 8.13682 8.41043 8.60368 9.28709 10.90767 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.011279 B = 0.002629 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.940080 B =10647.028985 C =12738.750627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 H 0.090 0.910 4 C 0.115 3.885 5 N -0.625 5.625 6 C 0.550 3.450 7 O -0.515 6.515 8 C -0.147 4.147 9 S -0.061 6.061 10 C -0.532 4.532 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.091 3.909 19 C 0.139 3.861 20 H 0.108 0.892 21 N -0.715 5.715 22 C 0.592 3.408 23 O -0.545 6.545 24 C -0.236 4.236 25 C -0.170 4.170 26 C -0.017 4.017 27 N -0.554 5.554 28 H 0.419 0.581 29 C 0.078 3.922 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.267 0.733 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.401 0.599 41 H 0.145 0.855 42 H 0.169 0.831 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.404 21.190 19.763 32.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.128 4.128 3 H 0.108 0.892 4 C -0.008 4.008 5 N -0.362 5.362 6 C 0.339 3.661 7 O -0.389 6.389 8 C -0.297 4.297 9 S 0.165 5.835 10 C -0.681 4.681 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.504 5.504 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.034 4.034 19 C 0.033 3.967 20 H 0.126 0.874 21 N -0.366 5.366 22 C 0.381 3.619 23 O -0.424 6.424 24 C -0.246 4.246 25 C -0.194 4.194 26 C -0.145 4.145 27 N -0.149 5.149 28 H 0.255 0.745 29 C -0.058 4.058 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.236 0.764 41 H 0.163 0.837 42 H 0.186 0.814 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -15.748 19.925 18.034 31.149 hybrid contribution 1.385 0.331 2.429 2.816 sum -14.363 20.256 20.463 32.177 Atomic orbital electron populations 1.21760 0.93172 1.02763 1.02221 1.22501 0.97010 0.99555 0.93764 0.89201 1.21916 0.88316 0.94678 0.95907 1.48392 1.30888 1.46081 1.10881 1.20028 0.82694 0.77586 0.85802 1.90708 1.69851 1.62310 1.15994 1.23517 0.97780 1.02872 1.05580 1.85360 1.33721 1.52067 1.12318 1.22906 1.15201 1.31104 0.98845 0.90872 1.24991 0.97672 0.95705 0.95264 1.70032 1.36593 1.32727 1.11014 0.86115 0.80735 0.78798 0.79845 1.19590 1.20573 1.20597 1.22662 0.97202 1.01842 0.81692 1.22149 0.96255 0.94173 0.84126 0.87405 1.45593 1.75557 1.10423 1.05059 1.17407 0.75223 0.86994 0.82255 1.90821 1.50396 1.14815 1.86322 1.20332 1.18036 0.93495 0.92708 1.22054 1.07691 0.93253 0.96444 1.21807 1.10123 0.91576 0.91006 1.41682 1.57277 1.06192 1.09720 0.74483 1.21898 1.01533 0.92137 0.90279 0.92033 0.91889 0.91943 0.90987 0.91163 0.89321 0.89170 0.92284 0.91134 0.89681 0.76371 0.83711 0.81380 0.80464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.16 37.15 0.34 -0.66 16 2 C -0.11 -0.91 3.19 -88.78 -0.28 -1.19 16 3 H 0.09 0.59 7.99 -51.93 -0.42 0.18 16 4 C 0.12 1.39 6.46 -3.06 -0.02 1.37 16 5 N -0.62 -9.61 3.33 -170.49 -0.57 -10.18 16 6 C 0.55 11.23 7.87 -10.98 -0.09 11.14 16 7 O -0.51 -12.37 16.19 5.55 0.09 -12.28 16 8 C -0.15 -3.21 5.16 36.01 0.19 -3.03 16 9 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 10 C -0.53 -15.64 9.50 30.94 0.29 -15.35 16 11 H 0.07 2.06 7.80 -52.48 -0.41 1.65 16 12 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 13 N -0.87 -26.73 13.22 55.49 0.73 -25.99 16 14 Si 0.92 21.98 29.55 -169.99 -5.02 16.95 16 15 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 C 0.09 1.16 6.39 -2.51 -0.02 1.14 16 19 C 0.14 1.42 2.81 -65.77 -0.19 1.24 16 20 H 0.11 1.31 7.54 -51.93 -0.39 0.91 16 21 N -0.72 -6.25 5.21 -52.85 -0.28 -6.52 16 22 C 0.59 6.68 7.81 -12.60 -0.10 6.58 16 23 O -0.55 -8.32 16.60 5.25 0.09 -8.24 16 24 C -0.24 -2.11 6.29 -103.35 -0.65 -2.76 16 25 C -0.17 -1.08 10.56 -37.50 -0.40 -1.48 16 26 C -0.02 -0.08 11.89 -16.82 -0.20 -0.28 16 27 N -0.55 -2.48 5.90 -12.84 -0.08 -2.56 16 28 H 0.42 0.51 8.96 -40.82 -0.37 0.15 16 29 C 0.08 0.57 11.69 -16.84 -0.20 0.38 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 33 H 0.07 0.91 7.76 -51.93 -0.40 0.50 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 36 H 0.09 1.88 7.85 -51.92 -0.41 1.47 16 37 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.21 7.48 -51.93 -0.39 0.83 16 40 H 0.40 2.40 7.66 -40.82 -0.31 2.09 16 41 H 0.15 0.62 7.70 -52.49 -0.40 0.21 16 42 H 0.17 0.30 8.06 -52.49 -0.42 -0.12 16 43 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 380.11 15.07 5.73 5.73 Total: -1.00 -39.15 380.11 -8.93 -48.09 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -6.01 Total: -0.19 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -1.41 Total: -0.86 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: -0.18 Total: -45.26 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: 0.18 Total: -20.52 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -39.15 -8.93 -48.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071657570.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.115 kcal (2) G-P(sol) polarization free energy of solvation -39.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds