Wall clock time and date at job start Tue Mar 31 2020 20:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 110.64866 * 2 1 4 4 C 1.54329 * 110.71782 * 236.65863 * 2 1 3 5 5 N 1.47018 * 107.27173 * 219.44426 * 4 2 1 6 6 C 1.34778 * 125.64703 * 178.91015 * 5 4 2 7 7 O 1.21285 * 120.00000 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00079 * 180.02562 * 6 5 4 9 9 S 1.81006 * 109.46857 * 179.97438 * 8 6 5 10 10 C 1.76203 * 99.99777 * 179.97438 * 9 8 6 11 11 H 1.08006 * 119.99440 * 0.02562 * 10 9 8 12 12 C 1.38791 * 120.00340 * 179.97438 * 10 9 8 13 13 N 1.31634 * 119.99838 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00359 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46979 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47184 * 120.00110 * 14 12 10 17 17 H 1.48508 * 109.47153 * 240.00257 * 14 12 10 18 18 C 1.47461 * 108.72830 * 358.97879 * 5 4 2 19 19 C 1.54911 * 104.80781 * 24.06811 * 18 5 4 20 20 H 1.08997 * 111.00245 * 81.13763 * 19 18 5 21 21 N 1.46506 * 111.00638 * 204.95274 * 19 18 5 22 22 C 1.34777 * 119.99873 * 270.42196 * 21 19 18 23 23 O 1.21628 * 119.99665 * 359.97438 * 22 21 19 24 24 C 1.47256 * 119.99881 * 179.97438 * 22 21 19 25 25 C 1.46686 * 126.94443 * 359.68207 * 24 22 21 26 26 C 1.34490 * 106.33328 * 179.88663 * 25 24 22 27 27 N 1.36445 * 108.85491 * 0.37789 * 26 25 24 28 28 H 0.97004 * 124.85182 * 179.72324 * 27 26 25 29 29 C 1.34661 * 110.30147 * 359.74870 * 27 26 25 30 30 H 1.09000 * 109.47044 * 296.85735 * 1 2 3 31 31 H 1.08996 * 109.47563 * 56.85968 * 1 2 3 32 32 H 1.09000 * 109.47593 * 176.85998 * 1 2 3 33 33 H 1.08997 * 109.88313 * 338.86789 * 4 2 1 34 34 H 1.09002 * 109.88029 * 100.02793 * 4 2 1 35 35 H 1.08998 * 109.46853 * 299.99449 * 8 6 5 36 36 H 1.08996 * 109.47214 * 60.00059 * 8 6 5 37 37 H 0.96995 * 120.00337 * 179.97438 * 13 12 10 38 38 H 1.09002 * 110.34880 * 265.25678 * 18 5 4 39 39 H 1.08993 * 110.40823 * 142.91624 * 18 5 4 40 40 H 0.96995 * 120.00050 * 90.14310 * 21 19 18 41 41 H 1.08001 * 126.83281 * 0.02562 * 25 24 22 42 42 H 1.08002 * 125.57126 * 180.16148 * 26 25 24 43 43 H 1.08000 * 125.80317 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0759 -0.7934 -1.2059 5 7 3.2443 -1.5521 -0.7363 6 6 3.9913 -2.3873 -1.4853 7 8 3.7179 -2.5625 -2.6539 8 6 5.1663 -3.1035 -0.8708 9 16 5.9601 -4.1437 -2.1215 10 6 7.2607 -4.8411 -1.1588 11 1 7.3641 -4.5745 -0.1172 12 6 8.1515 -5.7336 -1.7385 13 7 8.0250 -6.0588 -3.0078 14 14 9.5298 -6.4735 -0.7177 15 1 9.4535 -5.9506 0.6701 16 1 9.3919 -7.9520 -0.6973 17 1 10.8394 -6.1067 -1.3142 18 6 3.4632 -1.2497 0.6902 19 6 2.0789 -0.7935 1.2151 20 1 1.4448 -1.6508 1.4407 21 7 2.2214 0.0736 2.3874 22 6 2.2517 -0.4634 3.6231 23 8 2.1602 -1.6679 3.7651 24 6 2.3955 0.4081 4.8013 25 6 2.5238 1.8693 4.8067 26 6 2.6272 2.2352 6.0968 27 7 2.5809 1.1170 6.8773 28 1 2.6399 1.1140 7.8455 29 6 2.4424 0.0180 6.1115 30 1 -0.3633 0.4643 0.9168 31 1 -0.3634 0.5618 -0.8604 32 1 -0.3634 -1.0261 -0.0563 33 1 1.3128 -1.4786 -1.5750 34 1 2.3740 -0.1060 -1.9976 35 1 5.8831 -2.3720 -0.4979 36 1 4.8210 -3.7270 -0.0462 37 1 8.6478 -6.6823 -3.4131 38 1 4.1935 -0.4479 0.8000 39 1 3.7951 -2.1417 1.2213 40 1 2.2981 1.0339 2.2739 41 1 2.5313 2.5218 3.9461 42 1 2.7333 3.2482 6.4560 43 1 2.3787 -0.9985 6.4707 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071657570.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:14 Heat of formation + Delta-G solvation = -52.887328 kcal Electronic energy + Delta-G solvation = -25891.985173 eV Core-core repulsion = 22062.846370 eV Total energy + Delta-G solvation = -3829.138803 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.99620 -41.34302 -40.07534 -38.60503 -35.29485 -34.61337 -33.80110 -31.97763 -30.97877 -30.09622 -29.47918 -27.78265 -26.95265 -25.00859 -22.99688 -21.87349 -21.37005 -20.89135 -20.33546 -19.63379 -19.57200 -18.16375 -17.79526 -17.00315 -16.91031 -16.65750 -16.47853 -16.00437 -15.76403 -15.26788 -14.87483 -14.74766 -14.65153 -14.58488 -14.33126 -14.30743 -14.21977 -13.83597 -13.62309 -13.30032 -13.17983 -13.08624 -12.99143 -12.92560 -12.64080 -12.32008 -12.14556 -11.74266 -11.69025 -11.17948 -11.10258 -10.98889 -10.33773 -10.23013 -9.79668 -9.66919 -9.24393 -8.71166 -8.37244 -6.16256 0.80542 1.19286 1.39780 1.41018 1.48381 1.54977 1.62021 1.87455 2.23694 2.25104 2.59476 2.62304 2.96594 3.17552 3.33682 3.49496 3.77190 3.85029 4.01957 4.11221 4.16803 4.20542 4.25277 4.37926 4.44744 4.45457 4.56940 4.60259 4.69707 4.78124 4.85840 4.99495 5.03320 5.11630 5.20352 5.22974 5.37090 5.39215 5.51167 5.82994 6.00723 6.17512 6.25698 6.61718 6.74536 7.03129 7.03826 7.35686 8.72496 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.011279 B = 0.002629 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.940080 B =10647.028985 C =12738.750627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 H 0.122 0.878 4 C 0.107 3.893 5 N -0.614 5.614 6 C 0.549 3.451 7 O -0.560 6.560 8 C -0.122 4.122 9 S -0.143 6.143 10 C -0.547 4.547 11 H 0.079 0.921 12 C 0.014 3.986 13 N -0.910 5.910 14 Si 1.001 2.999 15 H -0.259 1.259 16 H -0.272 1.272 17 H -0.270 1.270 18 C 0.086 3.914 19 C 0.147 3.853 20 H 0.087 0.913 21 N -0.697 5.697 22 C 0.588 3.412 23 O -0.597 6.597 24 C -0.268 4.268 25 C -0.183 4.183 26 C -0.008 4.008 27 N -0.540 5.540 28 H 0.434 0.566 29 C 0.068 3.932 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.272 0.728 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.419 0.581 41 H 0.165 0.835 42 H 0.204 0.796 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.422 24.106 22.461 36.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 H 0.140 0.860 4 C -0.016 4.016 5 N -0.349 5.349 6 C 0.337 3.663 7 O -0.438 6.438 8 C -0.273 4.273 9 S 0.084 5.916 10 C -0.695 4.695 11 H 0.097 0.903 12 C -0.191 4.191 13 N -0.546 5.546 14 Si 0.822 3.178 15 H -0.183 1.183 16 H -0.198 1.198 17 H -0.195 1.195 18 C -0.039 4.039 19 C 0.040 3.960 20 H 0.105 0.895 21 N -0.349 5.349 22 C 0.379 3.621 23 O -0.479 6.479 24 C -0.278 4.278 25 C -0.206 4.206 26 C -0.136 4.136 27 N -0.136 5.136 28 H 0.274 0.726 29 C -0.070 4.070 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.123 0.877 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.257 0.743 41 H 0.183 0.817 42 H 0.220 0.780 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -15.798 22.932 20.785 34.749 hybrid contribution 1.295 -0.466 1.689 2.179 sum -14.503 22.466 22.475 34.931 Atomic orbital electron populations 1.21758 0.91768 1.02469 1.03620 1.22468 0.97907 0.99977 0.90316 0.86013 1.22234 0.86787 0.94625 0.97927 1.48272 1.30570 1.44349 1.11703 1.19693 0.82863 0.78329 0.85446 1.90684 1.71114 1.64231 1.17800 1.23317 0.98449 1.02214 1.03361 1.85479 1.35174 1.54317 1.16632 1.23201 1.15532 1.31705 0.99057 0.90293 1.26142 1.00502 0.95864 0.96570 1.70183 1.37923 1.33447 1.13067 0.84884 0.76795 0.77864 0.78255 1.18310 1.19750 1.19518 1.22877 0.99416 1.01773 0.79784 1.21910 0.94306 0.94396 0.85342 0.89482 1.45389 1.74598 1.11035 1.03872 1.17861 0.74236 0.86630 0.83401 1.90790 1.52978 1.17073 1.87064 1.20360 1.20336 0.94822 0.92296 1.22344 1.08233 0.91939 0.98080 1.22400 1.07951 0.92756 0.90532 1.41728 1.55802 1.05461 1.10581 0.72597 1.21996 1.01549 0.93028 0.90468 0.90705 0.90324 0.93223 0.91718 0.90566 0.87737 0.88396 0.91855 0.89149 0.91554 0.74326 0.81745 0.77963 0.80539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.16 71.98 0.66 -0.95 16 2 C -0.09 -1.24 3.19 -9.60 -0.03 -1.27 16 3 H 0.12 1.05 7.99 -2.39 -0.02 1.03 16 4 C 0.11 2.47 6.46 86.73 0.56 3.03 16 5 N -0.61 -18.75 3.33 -811.70 -2.70 -21.45 16 6 C 0.55 22.92 7.87 87.66 0.69 23.60 16 7 O -0.56 -27.95 16.19 -3.04 -0.05 -28.00 16 8 C -0.12 -5.47 5.16 71.24 0.37 -5.11 16 9 S -0.14 -8.40 20.57 -56.49 -1.16 -9.56 16 10 C -0.55 -32.74 9.50 67.95 0.65 -32.10 16 11 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 12 C 0.01 0.83 5.49 84.85 0.47 1.29 16 13 N -0.91 -57.25 13.22 21.65 0.29 -56.96 16 14 Si 1.00 45.15 29.55 68.60 2.03 47.18 16 15 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 C 0.09 2.11 6.39 86.85 0.55 2.67 16 19 C 0.15 2.85 2.81 46.38 0.13 2.98 16 20 H 0.09 2.13 7.54 -2.39 -0.02 2.11 16 21 N -0.70 -10.99 5.21 -439.35 -2.29 -13.28 16 22 C 0.59 12.99 7.81 86.61 0.68 13.67 16 23 O -0.60 -18.81 16.60 -4.12 -0.07 -18.88 16 24 C -0.27 -4.47 6.29 -19.04 -0.12 -4.59 16 25 C -0.18 -1.79 10.56 23.62 0.25 -1.54 16 26 C -0.01 -0.05 11.89 83.12 0.99 0.94 16 27 N -0.54 -3.48 5.90 -194.55 -1.15 -4.63 16 28 H 0.43 -0.11 8.96 -92.71 -0.83 -0.94 16 29 C 0.07 0.93 11.69 83.92 0.98 1.91 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.72 8.06 -2.39 -0.02 0.70 16 33 H 0.06 1.62 7.76 -2.39 -0.02 1.60 16 34 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.10 4.29 8.14 -2.40 -0.02 4.27 16 36 H 0.10 4.19 7.85 -2.40 -0.02 4.17 16 37 H 0.27 15.79 8.31 -92.71 -0.77 15.01 16 38 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.07 1.92 7.48 -2.39 -0.02 1.90 16 40 H 0.42 3.70 7.66 -92.71 -0.71 2.99 16 41 H 0.17 0.79 7.70 -2.91 -0.02 0.77 16 42 H 0.20 -0.27 8.06 -2.91 -0.02 -0.29 16 43 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -89.75 380.11 1.22 -88.52 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -0.49 Total: 12.54 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 6.82 Total: 4.53 kcal Atomic # 7 Polarization: -90.47 SS G_CDS: -5.85 Total: -96.32 kcal Atomic # 8 Polarization: -46.77 SS G_CDS: -0.12 Total: -46.89 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -89.75 1.22 -88.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071657570.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.635 kcal (2) G-P(sol) polarization free energy of solvation -89.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds