Wall clock time and date at job start Tue Mar 31 2020 20:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.70588 * 2 1 4 4 C 1.53194 * 109.58489 * 239.65058 * 2 1 3 5 5 C 1.53046 * 109.31369 * 185.57969 * 4 2 1 6 6 C 1.53038 * 109.53643 * 61.36145 * 5 4 2 7 7 H 1.08999 * 109.52634 * 58.60406 * 6 5 4 8 8 N 1.46502 * 109.49517 * 178.68462 * 6 5 4 9 9 C 1.34774 * 119.99979 * 204.56359 * 8 6 5 10 10 O 1.21621 * 120.00030 * 359.97438 * 9 8 6 11 11 C 1.47168 * 119.99764 * 180.02562 * 9 8 6 12 12 C 1.36618 * 125.16124 * 180.02562 * 11 9 8 13 13 C 1.36802 * 114.74673 * 179.97438 * 12 11 9 14 14 C 1.36609 * 114.74259 * 359.97438 * 13 12 11 15 15 C 1.47175 * 125.15882 * 180.02562 * 14 13 12 16 16 N 1.34775 * 119.99671 * 180.02562 * 15 14 13 17 17 O 1.21622 * 119.99817 * 359.97438 * 15 14 13 18 18 S 1.75833 * 125.16583 * 359.69387 * 11 9 8 19 19 C 1.53190 * 109.31416 * 298.63253 * 6 5 4 20 20 N 1.46919 * 109.58928 * 120.35984 * 2 1 3 21 21 C 1.36937 * 120.63091 * 353.41335 * 20 2 1 22 22 H 1.08002 * 119.99671 * 29.00588 * 21 20 2 23 23 C 1.38808 * 120.00220 * 209.00625 * 21 20 2 24 24 N 1.31623 * 120.00097 * 15.01847 * 23 21 20 25 25 Si 1.86798 * 120.00154 * 195.01889 * 23 21 20 26 26 H 1.48506 * 109.47245 * 60.00095 * 25 23 21 27 27 H 1.48504 * 109.47323 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47322 * 300.00305 * 25 23 21 29 29 H 1.08998 * 109.46847 * 299.64521 * 1 2 3 30 30 H 1.09007 * 109.47182 * 59.64003 * 1 2 3 31 31 H 1.08993 * 109.47503 * 179.64490 * 1 2 3 32 32 H 1.09004 * 109.49714 * 305.52741 * 4 2 1 33 33 H 1.08999 * 109.50129 * 65.59231 * 4 2 1 34 34 H 1.09004 * 109.45765 * 301.33762 * 5 4 2 35 35 H 1.08997 * 109.45736 * 181.38152 * 5 4 2 36 36 H 0.97004 * 120.00332 * 24.83691 * 8 6 5 37 37 H 1.08000 * 122.62705 * 359.93633 * 12 11 9 38 38 H 1.07997 * 122.62331 * 180.02562 * 13 12 11 39 39 H 0.97001 * 120.00582 * 0.02562 * 16 15 14 40 40 H 0.97002 * 119.99473 * 179.97438 * 16 15 14 41 41 H 1.09004 * 109.58681 * 174.42568 * 19 6 5 42 42 H 1.08999 * 109.58854 * 294.85582 * 19 6 5 43 43 H 0.97001 * 120.00277 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5674 -0.8480 -1.1703 6 6 3.9568 -1.6658 0.0633 7 1 3.4986 -2.6531 0.0053 8 7 5.4142 -1.8054 0.1172 9 6 5.9677 -2.8435 0.7748 10 8 5.2575 -3.6641 1.3237 11 6 7.4317 -2.9834 0.8294 12 6 8.1027 -3.9905 1.4635 13 6 9.4658 -3.9124 1.3791 14 6 9.9345 -2.8402 0.6740 15 6 11.3552 -2.5349 0.4406 16 7 11.7018 -1.4449 -0.2723 17 8 12.2163 -3.2656 0.8919 18 16 8.5827 -1.8844 0.0817 19 6 3.4651 -0.9470 1.3236 20 7 2.0225 -0.6996 1.1943 21 6 1.1537 -1.1136 2.1685 22 1 0.1360 -1.3681 1.9116 23 6 1.5809 -1.2060 3.4859 24 7 2.7040 -0.6278 3.8557 25 14 0.5619 -2.1510 4.7341 26 1 0.4326 -3.5650 4.2989 27 1 1.2307 -2.1007 6.0591 28 1 -0.7874 -1.5393 4.8366 29 1 -0.3633 0.5083 0.8931 30 1 -0.3634 0.5194 -0.8868 31 1 -0.3634 -1.0276 -0.0064 32 1 1.6029 -1.7252 -1.2915 33 1 1.7654 -0.1670 -2.1369 34 1 4.0061 0.1474 -1.0995 35 1 3.9376 -1.3448 -2.0671 36 1 5.9808 -1.1486 -0.3169 37 1 7.5966 -4.7858 1.9906 38 1 10.1201 -4.6416 1.8335 39 1 11.0150 -0.8615 -0.6312 40 1 12.6382 -1.2435 -0.4258 41 1 3.6519 -1.5719 2.1970 42 1 3.9903 0.0019 1.4315 43 1 3.0024 -0.6921 4.7765 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071893135.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:40 Heat of formation + Delta-G solvation = -21.519536 kcal Electronic energy + Delta-G solvation = -26684.832698 eV Core-core repulsion = 22857.054105 eV Total energy + Delta-G solvation = -3827.778593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.92208 -39.63766 -37.90091 -36.99507 -34.52651 -34.14126 -32.86213 -31.18608 -30.02599 -29.68558 -26.56355 -25.58213 -24.80319 -22.40436 -22.11153 -21.58175 -20.38847 -19.64062 -19.33036 -18.61540 -17.37407 -16.77047 -16.46485 -15.99920 -15.52226 -15.27265 -15.15806 -14.77089 -14.49574 -14.00026 -13.83504 -13.73342 -13.42013 -13.31144 -12.92566 -12.63197 -12.55274 -12.42815 -11.90701 -11.49750 -11.43507 -11.15468 -10.91772 -10.70618 -10.66017 -10.58031 -10.43770 -10.30400 -10.19163 -10.02159 -9.92122 -9.56912 -9.52061 -9.12454 -8.93095 -8.66398 -8.43408 -6.64103 -5.75450 -3.20091 -0.12614 1.01611 1.39249 1.89396 2.81425 3.02289 3.21495 3.34588 3.42581 3.48642 3.50301 4.47630 4.52391 4.77462 4.95400 5.12007 5.27546 5.32684 5.43723 5.52887 5.61577 5.67563 5.82268 5.91591 6.02196 6.04380 6.22474 6.25467 6.29488 6.35079 6.40289 6.43103 6.58343 6.66435 6.79506 6.80355 7.01176 7.09585 7.25876 7.68368 7.70895 7.75617 7.85033 8.36091 8.48777 9.22734 9.86974 10.41667 11.32673 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.015617 B = 0.003011 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.462952 B = 9297.291501 C =10454.923744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.117 4.117 6 C 0.116 3.884 7 H 0.086 0.914 8 N -0.712 5.712 9 C 0.579 3.421 10 O -0.509 6.509 11 C -0.201 4.201 12 C -0.082 4.082 13 C -0.056 4.056 14 C -0.252 4.252 15 C 0.598 3.402 16 N -0.849 5.849 17 O -0.529 6.529 18 S 0.179 5.821 19 C 0.167 3.833 20 N -0.582 5.582 21 C -0.254 4.254 22 H 0.070 0.930 23 C 0.007 3.993 24 N -0.901 5.901 25 Si 0.901 3.099 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.283 1.283 29 H 0.061 0.939 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.389 0.611 37 H 0.163 0.837 38 H 0.159 0.841 39 H 0.401 0.599 40 H 0.410 0.590 41 H 0.097 0.903 42 H 0.018 0.982 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.528 0.820 -12.586 18.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.011 3.989 7 H 0.104 0.896 8 N -0.362 5.362 9 C 0.363 3.637 10 O -0.385 6.385 11 C -0.323 4.323 12 C -0.114 4.114 13 C -0.090 4.090 14 C -0.373 4.373 15 C 0.383 3.617 16 N -0.413 5.413 17 O -0.406 6.406 18 S 0.446 5.554 19 C 0.040 3.960 20 N -0.306 5.306 21 C -0.384 4.384 22 H 0.088 0.912 23 C -0.192 4.192 24 N -0.545 5.545 25 Si 0.731 3.269 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.209 1.209 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.222 0.778 37 H 0.180 0.820 38 H 0.177 0.823 39 H 0.229 0.771 40 H 0.241 0.759 41 H 0.115 0.885 42 H 0.036 0.964 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.313 1.032 -12.532 18.313 hybrid contribution 0.090 -0.929 1.092 1.437 sum 13.403 0.103 -11.440 17.622 Atomic orbital electron populations 1.21800 0.95928 1.01413 1.00265 1.20497 0.93134 0.93560 0.87011 0.95705 1.22053 0.94087 1.01430 0.99010 1.21690 0.97620 0.99626 0.96564 1.22122 0.76741 1.01288 0.98710 0.89621 1.46003 1.09159 1.26253 1.54791 1.17006 0.84745 0.82356 0.79640 1.90885 1.61265 1.42134 1.44175 1.25179 0.97804 1.01515 1.07800 1.20640 0.92793 0.98989 0.98999 1.20599 0.94940 0.96805 0.96675 1.24687 0.96671 1.03901 1.12057 1.17040 0.86411 0.80715 0.77557 1.43674 1.12525 1.27919 1.57226 1.90868 1.50247 1.49090 1.50421 1.83761 0.94689 1.26553 1.50379 1.21108 0.83682 0.96967 0.94251 1.44010 1.02556 1.64682 1.19335 1.19100 0.94699 1.38460 0.86128 0.91189 1.25073 0.97719 0.99391 0.97039 1.69977 1.23288 1.44236 1.16973 0.86389 0.79456 0.80373 0.80654 1.20892 1.21652 1.20942 0.91949 0.94326 0.92774 0.91986 0.92562 0.92197 0.92967 0.77776 0.81986 0.82321 0.77081 0.75858 0.88515 0.96433 0.93628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 7.94 37.15 0.30 -2.19 16 2 C 0.16 3.26 3.50 -67.60 -0.24 3.02 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.05 5.37 -26.61 -0.14 -2.19 16 5 C -0.12 -1.78 5.35 -26.69 -0.14 -1.93 16 6 C 0.12 2.17 2.60 -67.81 -0.18 1.99 16 7 H 0.09 1.82 7.59 -51.93 -0.39 1.42 16 8 N -0.71 -11.21 5.08 -54.85 -0.28 -11.49 16 9 C 0.58 9.94 7.77 -12.64 -0.10 9.85 16 10 O -0.51 -10.99 16.49 5.26 0.09 -10.91 16 11 C -0.20 -2.70 6.46 -36.54 -0.24 -2.93 16 12 C -0.08 -1.02 9.88 -40.69 -0.40 -1.42 16 13 C -0.06 -0.62 9.88 -40.69 -0.40 -1.03 16 14 C -0.25 -2.65 6.46 -36.54 -0.24 -2.89 16 15 C 0.60 6.28 8.08 -12.63 -0.10 6.18 16 16 N -0.85 -5.37 8.87 30.37 0.27 -5.10 16 17 O -0.53 -7.41 17.65 5.26 0.09 -7.32 16 18 S 0.18 1.68 21.40 -107.50 -2.30 -0.62 16 19 C 0.17 3.93 4.86 -3.71 -0.02 3.91 16 20 N -0.58 -14.15 2.99 -164.78 -0.49 -14.64 16 21 C -0.25 -6.85 8.60 -15.06 -0.13 -6.98 16 22 H 0.07 1.83 6.21 -52.49 -0.33 1.50 16 23 C 0.01 0.19 4.96 -17.43 -0.09 0.10 16 24 N -0.90 -26.33 11.14 55.49 0.62 -25.71 16 25 Si 0.90 22.18 29.58 -169.99 -5.03 17.15 16 26 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 29 H 0.06 1.24 7.62 -51.93 -0.40 0.84 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 1.00 7.44 -51.93 -0.39 0.62 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.39 4.82 7.70 -40.82 -0.31 4.51 16 37 H 0.16 1.97 8.04 -52.49 -0.42 1.55 16 38 H 0.16 1.56 8.04 -52.49 -0.42 1.14 16 39 H 0.40 1.70 7.93 -40.82 -0.32 1.38 16 40 H 0.41 1.89 8.93 -40.82 -0.36 1.52 16 41 H 0.10 2.70 6.06 -51.93 -0.31 2.39 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 367.09 15.07 5.53 5.53 Total: -1.00 -34.30 367.09 -9.37 -43.67 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.76 Total: 5.93 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -2.11 Total: 3.50 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.12 Total: -56.94 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.18 Total: -18.23 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.30 Total: -0.62 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.30 -9.37 -43.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071893135.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.155 kcal (2) G-P(sol) polarization free energy of solvation -34.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds