Wall clock time and date at job start Tue Mar 31 2020 20:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.59010 * 2 1 4 4 C 1.53199 * 109.58227 * 120.42575 * 2 1 3 5 5 C 1.53045 * 109.30664 * 174.42001 * 4 2 1 6 6 C 1.53033 * 109.54110 * 298.63078 * 5 4 2 7 7 H 1.09002 * 109.50007 * 181.31621 * 6 5 4 8 8 N 1.46501 * 109.50074 * 301.41911 * 6 5 4 9 9 C 1.34774 * 120.00003 * 204.83667 * 8 6 5 10 10 O 1.21684 * 120.00014 * 359.97438 * 9 8 6 11 11 C 1.46730 * 119.99849 * 180.02562 * 9 8 6 12 12 C 1.34877 * 125.05726 * 179.71999 * 11 9 8 13 13 C 1.38942 * 113.65724 * 179.79909 * 12 11 9 14 14 C 1.47336 * 122.96273 * 180.21953 * 13 12 11 15 15 N 1.34777 * 119.99594 * 180.31084 * 14 13 12 16 16 O 1.21615 * 120.00179 * 0.31882 * 14 13 12 17 17 C 1.36661 * 114.07361 * 0.48475 * 13 12 11 18 18 S 1.70600 * 110.53123 * 359.73780 * 17 13 12 19 19 C 1.53192 * 109.30939 * 61.36837 * 6 5 4 20 20 N 1.46916 * 108.77871 * 305.36275 * 19 6 5 21 21 C 1.36934 * 120.63650 * 233.58702 * 20 19 6 22 22 H 1.08000 * 120.00496 * 149.29656 * 21 20 19 23 23 C 1.38822 * 119.99687 * 329.29495 * 21 20 19 24 24 N 1.31620 * 119.99894 * 345.75041 * 23 21 20 25 25 Si 1.86801 * 119.99668 * 165.74981 * 23 21 20 26 26 H 1.48494 * 109.47391 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46889 * 120.00367 * 25 23 21 28 28 H 1.48491 * 109.47167 * 239.99841 * 25 23 21 29 29 H 1.08995 * 109.47615 * 180.28480 * 1 2 3 30 30 H 1.09002 * 109.46767 * 300.28859 * 1 2 3 31 31 H 1.09005 * 109.46985 * 60.28273 * 1 2 3 32 32 H 1.08997 * 109.49858 * 294.36983 * 4 2 1 33 33 H 1.08996 * 109.49653 * 54.47301 * 4 2 1 34 34 H 1.09006 * 109.45233 * 178.61443 * 5 4 2 35 35 H 1.08997 * 109.46404 * 58.65960 * 5 4 2 36 36 H 0.96997 * 119.99821 * 24.83725 * 8 6 5 37 37 H 1.08000 * 123.17230 * 359.96805 * 12 11 9 38 38 H 0.96991 * 120.00605 * 0.02562 * 15 14 13 39 39 H 0.97007 * 119.99303 * 180.02562 * 15 14 13 40 40 H 1.07999 * 124.73130 * 179.73101 * 17 13 12 41 41 H 1.09003 * 109.58760 * 185.57527 * 19 6 5 42 42 H 1.09007 * 109.58738 * 65.15635 * 19 6 5 43 43 H 0.96997 * 119.99522 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0435 -0.7310 1.2446 5 6 3.5675 -0.8495 1.1691 6 6 3.9568 -1.6658 -0.0654 7 1 5.0412 -1.7696 -0.1058 8 7 3.3404 -2.9926 0.0112 9 6 3.8951 -4.0321 -0.6430 10 8 4.9077 -3.8686 -1.2978 11 6 3.2773 -5.3609 -0.5667 12 6 3.7412 -6.4674 -1.1828 13 6 2.9738 -7.6010 -0.9451 14 6 3.2969 -8.9214 -1.5133 15 7 2.5068 -9.9806 -1.2484 16 8 4.2767 -9.0556 -2.2212 17 6 1.8896 -7.3820 -0.1425 18 16 1.8192 -5.7456 0.3346 19 6 3.4650 -0.9454 -1.3248 20 7 2.0226 -0.6982 -1.1953 21 6 1.1537 -1.1101 -2.1703 22 1 0.1439 -1.3910 -1.9102 23 6 1.5710 -1.1665 -3.4931 24 7 2.6865 -0.5703 -3.8573 25 14 0.5494 -2.0887 -4.7561 26 1 -0.6497 -2.6658 -4.0970 27 1 0.1226 -1.1523 -5.8267 28 1 1.3626 -3.1806 -5.3488 29 1 -0.3634 -1.0276 0.0051 30 1 -0.3633 0.5183 0.8874 31 1 -0.3633 0.5095 -0.8926 32 1 1.7660 -0.1695 2.1367 33 1 1.6029 -1.7269 1.2892 34 1 3.9377 -1.3475 2.0653 35 1 4.0062 0.1459 1.0996 36 1 2.5331 -3.1228 0.5328 37 1 4.6273 -6.4725 -1.8003 38 1 1.7252 -9.8736 -0.6840 39 1 2.7198 -10.8501 -1.6222 40 1 1.1768 -8.1392 0.1489 41 1 3.6518 -1.5692 -2.1990 42 1 3.9904 0.0037 -1.4316 43 1 2.9782 -0.6102 -4.7815 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072099575.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:51 Heat of formation + Delta-G solvation = -22.146084 kcal Electronic energy + Delta-G solvation = -27591.251144 eV Core-core repulsion = 23763.445382 eV Total energy + Delta-G solvation = -3827.805762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.06733 -39.46016 -37.77075 -36.66222 -34.15715 -33.94554 -32.74560 -31.11581 -29.96762 -29.50825 -26.32316 -25.60865 -24.98228 -23.29823 -22.18362 -20.71325 -20.39647 -19.21621 -18.89118 -18.65612 -17.23607 -17.11115 -16.32971 -15.67862 -15.31244 -15.14508 -14.95941 -14.54724 -14.27645 -13.96415 -13.84326 -13.45210 -13.25774 -13.20609 -12.94471 -12.73157 -12.58590 -12.47329 -11.90411 -11.34786 -11.25053 -11.17458 -10.97106 -10.89266 -10.72213 -10.39867 -10.32945 -10.23018 -9.96845 -9.95235 -9.66957 -9.50496 -9.44705 -9.04656 -8.75360 -8.44817 -8.42213 -6.58219 -5.74420 -3.20360 0.30621 1.28157 1.64916 1.68757 3.15802 3.25792 3.38986 3.44958 3.48804 3.54126 3.71622 4.50680 4.58695 4.81744 5.05335 5.12374 5.29588 5.34288 5.41911 5.49004 5.57897 5.66853 5.95168 5.99201 6.08587 6.13829 6.16248 6.30374 6.33471 6.42053 6.49265 6.52740 6.57589 6.64887 6.85200 7.03604 7.06823 7.09862 7.35829 7.68406 7.84392 7.97545 8.04608 8.50372 8.64378 9.24229 9.88222 10.44924 11.33593 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.011551 B = 0.004299 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.461869 B = 6512.208606 C = 7434.020496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.131 4.131 5 C -0.119 4.119 6 C 0.118 3.882 7 H 0.079 0.921 8 N -0.694 5.694 9 C 0.586 3.414 10 O -0.527 6.527 11 C -0.247 4.247 12 C -0.024 4.024 13 C -0.162 4.162 14 C 0.584 3.416 15 N -0.852 5.852 16 O -0.534 6.534 17 C -0.215 4.215 18 S 0.253 5.747 19 C 0.162 3.838 20 N -0.583 5.583 21 C -0.252 4.252 22 H 0.068 0.932 23 C 0.009 3.991 24 N -0.897 5.897 25 Si 0.892 3.108 26 H -0.278 1.278 27 H -0.290 1.290 28 H -0.289 1.289 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.392 0.608 37 H 0.163 0.837 38 H 0.399 0.601 39 H 0.405 0.595 40 H 0.174 0.826 41 H 0.096 0.904 42 H 0.028 0.972 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.503 -12.166 14.124 19.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.170 4.170 5 C -0.157 4.157 6 C 0.013 3.987 7 H 0.097 0.903 8 N -0.344 5.344 9 C 0.370 3.630 10 O -0.406 6.406 11 C -0.368 4.368 12 C -0.055 4.055 13 C -0.180 4.180 14 C 0.368 3.632 15 N -0.416 5.416 16 O -0.411 6.411 17 C -0.355 4.355 18 S 0.521 5.479 19 C 0.035 3.965 20 N -0.306 5.306 21 C -0.382 4.382 22 H 0.085 0.915 23 C -0.190 4.190 24 N -0.541 5.541 25 Si 0.722 3.278 26 H -0.203 1.203 27 H -0.217 1.217 28 H -0.215 1.215 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.226 0.774 37 H 0.181 0.819 38 H 0.228 0.772 39 H 0.236 0.764 40 H 0.191 0.809 41 H 0.114 0.886 42 H 0.046 0.954 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.047 -11.015 13.964 18.240 hybrid contribution -0.404 -1.803 -1.340 2.283 sum -4.450 -12.818 12.624 18.533 Atomic orbital electron populations 1.21792 0.96104 1.01158 1.00220 1.20471 0.92912 0.93669 0.87152 0.95697 1.22076 0.95133 1.00572 0.99245 1.21701 0.97055 1.00268 0.96695 1.21859 0.97087 0.81237 0.98528 0.90305 1.45726 1.29158 1.08790 1.50703 1.16807 0.84028 0.82247 0.79921 1.90830 1.24818 1.84075 1.40827 1.24422 1.02923 0.99366 1.10043 1.20308 0.99900 0.88755 0.96535 1.18996 0.98487 0.95429 1.05117 1.17645 0.82261 0.83720 0.79561 1.43657 1.30774 1.11914 1.55243 1.90860 1.27509 1.85096 1.37668 1.26029 1.02245 1.03290 1.03943 1.83055 1.21622 0.98874 1.44334 1.21180 0.83882 0.97089 0.94321 1.44040 1.02661 1.64877 1.19031 1.19080 0.95356 1.37959 0.85788 0.91479 1.25092 0.97630 0.99232 0.97088 1.69976 1.23577 1.43829 1.16696 0.86386 0.79729 0.79669 0.81988 1.20297 1.21706 1.21534 0.93019 0.94447 0.91994 0.92725 0.92880 0.92943 0.90868 0.77354 0.81910 0.77216 0.76396 0.80901 0.88628 0.95441 0.93658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.96 37.16 0.30 -2.06 16 2 C 0.16 3.14 3.50 -67.59 -0.24 2.90 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -1.99 5.21 -26.61 -0.14 -2.13 16 5 C -0.12 -1.81 5.58 -26.69 -0.15 -1.96 16 6 C 0.12 2.21 2.81 -67.81 -0.19 2.02 16 7 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 8 N -0.69 -12.31 4.91 -54.98 -0.27 -12.58 16 9 C 0.59 11.33 7.75 -12.83 -0.10 11.23 16 10 O -0.53 -12.19 16.46 5.20 0.09 -12.10 16 11 C -0.25 -3.95 6.37 -37.35 -0.24 -4.19 16 12 C -0.02 -0.39 9.47 -40.51 -0.38 -0.77 16 13 C -0.16 -2.07 5.82 -106.51 -0.62 -2.69 16 14 C 0.58 7.45 8.06 -12.56 -0.10 7.35 16 15 N -0.85 -6.34 8.84 30.41 0.27 -6.07 16 16 O -0.53 -9.18 17.53 5.26 0.09 -9.09 16 17 C -0.22 -2.04 10.41 30.16 0.31 -1.73 16 18 S 0.25 2.80 22.09 -107.50 -2.37 0.43 16 19 C 0.16 3.81 4.87 -3.72 -0.02 3.79 16 20 N -0.58 -13.55 2.90 -164.77 -0.48 -14.03 16 21 C -0.25 -6.53 8.55 -15.06 -0.13 -6.66 16 22 H 0.07 1.70 6.26 -52.49 -0.33 1.37 16 23 C 0.01 0.25 4.96 -17.43 -0.09 0.16 16 24 N -0.90 -26.31 11.22 55.49 0.62 -25.69 16 25 Si 0.89 22.01 29.58 -169.99 -5.03 16.98 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 29 H 0.05 0.90 7.44 -51.93 -0.39 0.51 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.20 7.63 -51.93 -0.40 0.80 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.79 6.40 -51.93 -0.33 0.45 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.39 6.12 5.85 -40.82 -0.24 5.88 16 37 H 0.16 2.86 7.95 -52.49 -0.42 2.44 16 38 H 0.40 1.67 7.29 -40.82 -0.30 1.37 16 39 H 0.40 2.45 8.93 -40.82 -0.36 2.08 16 40 H 0.17 0.87 6.99 -52.49 -0.37 0.50 16 41 H 0.10 2.68 6.18 -51.93 -0.32 2.36 16 42 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 43 H 0.25 7.31 8.31 -40.82 -0.34 6.98 16 LS Contribution 361.81 15.07 5.45 5.45 Total: -1.00 -34.90 361.81 -8.92 -43.82 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -5.51 Total: 7.60 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -1.78 Total: 5.27 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.14 Total: -58.37 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: 0.18 Total: -21.19 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -2.37 Total: 0.43 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.90 -8.92 -43.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072099575.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.675 kcal (2) G-P(sol) polarization free energy of solvation -34.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds