Wall clock time and date at job start Tue Mar 31 2020 20:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.59010 * 2 1 4 4 C 1.53199 * 109.58227 * 120.42575 * 2 1 3 5 5 C 1.53045 * 109.30664 * 174.42001 * 4 2 1 6 6 C 1.53033 * 109.54110 * 298.63078 * 5 4 2 7 7 H 1.09002 * 109.50007 * 181.31621 * 6 5 4 8 8 N 1.46501 * 109.50074 * 301.41911 * 6 5 4 9 9 C 1.34774 * 120.00003 * 204.83667 * 8 6 5 10 10 O 1.21684 * 120.00014 * 359.97438 * 9 8 6 11 11 C 1.46730 * 119.99849 * 180.02562 * 9 8 6 12 12 C 1.34877 * 125.05726 * 179.71999 * 11 9 8 13 13 C 1.38942 * 113.65724 * 179.79909 * 12 11 9 14 14 C 1.47336 * 122.96273 * 180.21953 * 13 12 11 15 15 N 1.34777 * 119.99594 * 180.31084 * 14 13 12 16 16 O 1.21615 * 120.00179 * 0.31882 * 14 13 12 17 17 C 1.36661 * 114.07361 * 0.48475 * 13 12 11 18 18 S 1.70600 * 110.53123 * 359.73780 * 17 13 12 19 19 C 1.53192 * 109.30939 * 61.36837 * 6 5 4 20 20 N 1.46916 * 108.77871 * 305.36275 * 19 6 5 21 21 C 1.36934 * 120.63650 * 233.58702 * 20 19 6 22 22 H 1.08000 * 120.00496 * 149.29656 * 21 20 19 23 23 C 1.38822 * 119.99687 * 329.29495 * 21 20 19 24 24 N 1.31620 * 119.99894 * 345.75041 * 23 21 20 25 25 Si 1.86801 * 119.99668 * 165.74981 * 23 21 20 26 26 H 1.48494 * 109.47391 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46889 * 120.00367 * 25 23 21 28 28 H 1.48491 * 109.47167 * 239.99841 * 25 23 21 29 29 H 1.08995 * 109.47615 * 180.28480 * 1 2 3 30 30 H 1.09002 * 109.46767 * 300.28859 * 1 2 3 31 31 H 1.09005 * 109.46985 * 60.28273 * 1 2 3 32 32 H 1.08997 * 109.49858 * 294.36983 * 4 2 1 33 33 H 1.08996 * 109.49653 * 54.47301 * 4 2 1 34 34 H 1.09006 * 109.45233 * 178.61443 * 5 4 2 35 35 H 1.08997 * 109.46404 * 58.65960 * 5 4 2 36 36 H 0.96997 * 119.99821 * 24.83725 * 8 6 5 37 37 H 1.08000 * 123.17230 * 359.96805 * 12 11 9 38 38 H 0.96991 * 120.00605 * 0.02562 * 15 14 13 39 39 H 0.97007 * 119.99303 * 180.02562 * 15 14 13 40 40 H 1.07999 * 124.73130 * 179.73101 * 17 13 12 41 41 H 1.09003 * 109.58760 * 185.57527 * 19 6 5 42 42 H 1.09007 * 109.58738 * 65.15635 * 19 6 5 43 43 H 0.96997 * 119.99522 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0435 -0.7310 1.2446 5 6 3.5675 -0.8495 1.1691 6 6 3.9568 -1.6658 -0.0654 7 1 5.0412 -1.7696 -0.1058 8 7 3.3404 -2.9926 0.0112 9 6 3.8951 -4.0321 -0.6430 10 8 4.9077 -3.8686 -1.2978 11 6 3.2773 -5.3609 -0.5667 12 6 3.7412 -6.4674 -1.1828 13 6 2.9738 -7.6010 -0.9451 14 6 3.2969 -8.9214 -1.5133 15 7 2.5068 -9.9806 -1.2484 16 8 4.2767 -9.0556 -2.2212 17 6 1.8896 -7.3820 -0.1425 18 16 1.8192 -5.7456 0.3346 19 6 3.4650 -0.9454 -1.3248 20 7 2.0226 -0.6982 -1.1953 21 6 1.1537 -1.1101 -2.1703 22 1 0.1439 -1.3910 -1.9102 23 6 1.5710 -1.1665 -3.4931 24 7 2.6865 -0.5703 -3.8573 25 14 0.5494 -2.0887 -4.7561 26 1 -0.6497 -2.6658 -4.0970 27 1 0.1226 -1.1523 -5.8267 28 1 1.3626 -3.1806 -5.3488 29 1 -0.3634 -1.0276 0.0051 30 1 -0.3633 0.5183 0.8874 31 1 -0.3633 0.5095 -0.8926 32 1 1.7660 -0.1695 2.1367 33 1 1.6029 -1.7269 1.2892 34 1 3.9377 -1.3475 2.0653 35 1 4.0062 0.1459 1.0996 36 1 2.5331 -3.1228 0.5328 37 1 4.6273 -6.4725 -1.8003 38 1 1.7252 -9.8736 -0.6840 39 1 2.7198 -10.8501 -1.6222 40 1 1.1768 -8.1392 0.1489 41 1 3.6518 -1.5692 -2.1990 42 1 3.9904 0.0037 -1.4316 43 1 2.9782 -0.6102 -4.7815 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072099575.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:50 Heat of formation + Delta-G solvation = -50.160331 kcal Electronic energy + Delta-G solvation = -27592.465933 eV Core-core repulsion = 23763.445382 eV Total energy + Delta-G solvation = -3829.020551 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.25911 -40.77373 -39.26621 -37.84073 -35.82197 -34.83078 -34.50830 -32.56232 -31.75478 -30.68023 -27.88445 -26.91292 -26.47290 -24.56661 -23.83845 -22.12689 -21.74880 -20.52523 -20.09727 -19.92044 -18.24874 -18.11820 -18.06795 -17.18926 -16.75613 -16.52276 -16.20496 -15.87374 -15.78435 -15.56688 -15.28890 -14.87954 -14.68674 -14.50393 -14.24057 -13.97224 -13.80733 -13.77887 -13.56327 -13.00704 -12.87088 -12.64346 -12.52003 -12.41374 -12.37556 -12.10759 -12.03860 -11.56321 -11.33480 -11.22148 -11.10996 -11.02999 -10.77668 -10.53804 -10.22697 -9.93810 -9.65598 -8.55170 -7.81560 -5.28169 -0.68966 0.29418 0.54346 0.66312 1.38641 1.42233 1.50084 1.95362 2.16103 2.35904 2.50099 2.57681 3.35622 3.64395 3.71971 3.91510 4.01569 4.05266 4.09762 4.11776 4.19958 4.49824 4.59073 4.66355 4.75483 4.83171 4.95040 4.95670 4.97935 5.08019 5.10140 5.14176 5.28977 5.33624 5.59553 5.62684 5.65650 5.74729 5.75215 5.83752 6.39033 6.45853 6.53797 7.19679 7.20570 7.26740 7.93982 8.45409 9.23865 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.011551 B = 0.004299 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.461869 B = 6512.208606 C = 7434.020496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.013 0.987 4 C -0.120 4.120 5 C -0.111 4.111 6 C 0.126 3.874 7 H 0.066 0.934 8 N -0.683 5.683 9 C 0.578 3.422 10 O -0.584 6.584 11 C -0.298 4.298 12 C -0.034 4.034 13 C -0.190 4.190 14 C 0.582 3.418 15 N -0.821 5.821 16 O -0.594 6.594 17 C -0.172 4.172 18 S 0.334 5.666 19 C 0.172 3.828 20 N -0.595 5.595 21 C -0.232 4.232 22 H 0.081 0.919 23 C -0.055 4.055 24 N -0.938 5.938 25 Si 0.942 3.058 26 H -0.250 1.250 27 H -0.295 1.295 28 H -0.310 1.310 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.033 0.967 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.405 0.595 37 H 0.124 0.876 38 H 0.420 0.580 39 H 0.415 0.585 40 H 0.232 0.768 41 H 0.042 0.958 42 H -0.002 1.002 43 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.671 -14.020 18.486 24.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.031 0.969 4 C -0.159 4.159 5 C -0.149 4.149 6 C 0.020 3.980 7 H 0.084 0.916 8 N -0.333 5.333 9 C 0.365 3.635 10 O -0.466 6.466 11 C -0.418 4.418 12 C -0.066 4.066 13 C -0.207 4.207 14 C 0.366 3.634 15 N -0.386 5.386 16 O -0.476 6.476 17 C -0.312 4.312 18 S 0.602 5.398 19 C 0.045 3.955 20 N -0.319 5.319 21 C -0.362 4.362 22 H 0.099 0.901 23 C -0.250 4.250 24 N -0.585 5.585 25 Si 0.772 3.228 26 H -0.174 1.174 27 H -0.222 1.222 28 H -0.238 1.238 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.113 0.887 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.242 0.758 37 H 0.142 0.858 38 H 0.252 0.748 39 H 0.248 0.752 40 H 0.249 0.751 41 H 0.061 0.939 42 H 0.016 0.984 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.328 -12.899 18.419 23.979 hybrid contribution 0.799 -1.224 -2.586 2.971 sum -7.529 -14.123 15.833 22.513 Atomic orbital electron populations 1.21729 0.94427 1.01586 1.00839 1.20804 0.94389 0.93178 0.86891 0.96922 1.21980 0.94430 1.01178 0.98278 1.21690 0.97617 0.99922 0.95672 1.21577 0.96380 0.81891 0.98111 0.91634 1.45570 1.29421 1.07940 1.50360 1.17390 0.83472 0.83832 0.78832 1.90787 1.27433 1.85298 1.43101 1.24154 1.06674 0.97471 1.13467 1.20254 0.99467 0.90627 0.96301 1.18833 0.99852 0.94571 1.07485 1.17735 0.82028 0.84640 0.78983 1.43379 1.30132 1.10948 1.54116 1.90837 1.30275 1.85935 1.40558 1.26682 1.00639 1.04042 0.99830 1.82687 1.16944 0.98746 1.41437 1.20817 0.84543 0.95218 0.94936 1.44268 1.02030 1.65597 1.19970 1.19463 0.95764 1.35072 0.85929 0.90101 1.25781 0.98823 1.01161 0.99218 1.70156 1.25765 1.46610 1.16001 0.85554 0.79109 0.77955 0.80156 1.17388 1.22229 1.23839 0.92602 0.90510 0.94747 0.88713 0.91692 0.89325 0.90657 0.75766 0.85790 0.74787 0.75223 0.75106 0.93906 0.98399 0.95034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 7.96 71.98 0.57 -3.46 16 2 C 0.15 5.48 3.50 44.98 0.16 5.64 16 3 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 4 C -0.12 -3.12 5.21 30.68 0.16 -2.96 16 5 C -0.11 -3.07 5.58 30.62 0.17 -2.90 16 6 C 0.13 4.81 2.81 45.07 0.13 4.93 16 7 H 0.07 2.66 7.58 -2.39 -0.02 2.64 16 8 N -0.68 -24.04 4.91 -446.10 -2.19 -26.23 16 9 C 0.58 23.39 7.75 86.46 0.67 24.06 16 10 O -0.58 -29.54 16.46 -4.30 -0.07 -29.61 16 11 C -0.30 -9.58 6.37 23.72 0.15 -9.43 16 12 C -0.03 -1.14 9.47 21.67 0.21 -0.94 16 13 C -0.19 -4.59 5.82 -21.08 -0.12 -4.72 16 14 C 0.58 14.27 8.06 86.64 0.70 14.97 16 15 N -0.82 -9.54 8.84 -175.95 -1.56 -11.10 16 16 O -0.59 -21.28 17.53 -4.08 -0.07 -21.35 16 17 C -0.17 -2.42 10.41 67.45 0.70 -1.72 16 18 S 0.33 6.04 22.09 -56.49 -1.25 4.79 16 19 C 0.17 8.52 4.87 86.36 0.42 8.94 16 20 N -0.59 -27.83 2.90 -675.22 -1.96 -29.78 16 21 C -0.23 -12.04 8.55 84.04 0.72 -11.33 16 22 H 0.08 3.95 6.26 -2.91 -0.02 3.93 16 23 C -0.06 -3.14 4.96 84.86 0.42 -2.72 16 24 N -0.94 -58.65 11.22 21.65 0.24 -58.41 16 25 Si 0.94 46.46 29.58 68.60 2.03 48.49 16 26 H -0.25 -11.07 7.11 99.48 0.71 -10.36 16 27 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 28 H -0.31 -16.23 7.11 99.48 0.71 -15.53 16 29 H 0.05 1.70 7.44 -2.39 -0.02 1.68 16 30 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.03 1.25 7.63 -2.38 -0.02 1.23 16 32 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.06 1.57 6.40 -2.39 -0.02 1.55 16 34 H 0.09 1.91 8.14 -2.38 -0.02 1.90 16 35 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.40 11.63 5.85 -92.71 -0.54 11.09 16 37 H 0.12 4.98 7.95 -2.91 -0.02 4.95 16 38 H 0.42 1.27 7.29 -92.71 -0.68 0.60 16 39 H 0.42 3.84 8.93 -92.70 -0.83 3.01 16 40 H 0.23 0.44 6.99 -2.91 -0.02 0.42 16 41 H 0.04 2.58 6.18 -2.39 -0.01 2.57 16 42 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 43 H 0.24 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -88.05 361.81 -0.73 -88.78 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -0.96 Total: 16.07 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: 5.05 Total: 18.37 kcal Atomic # 7 Polarization: -120.07 SS G_CDS: -5.46 Total: -125.53 kcal Atomic # 8 Polarization: -50.82 SS G_CDS: -0.14 Total: -50.97 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Atomic # 16 Polarization: 6.04 SS G_CDS: -1.25 Total: 4.79 kcal Total: -88.05 -0.73 -88.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072099575.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.618 kcal (2) G-P(sol) polarization free energy of solvation -88.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds