Wall clock time and date at job start Tue Mar 31 2020 20:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.69349 * 2 1 4 4 C 1.53183 * 109.58711 * 239.64726 * 2 1 3 5 5 C 1.53042 * 109.31098 * 185.57565 * 4 2 1 6 6 C 1.53041 * 109.53903 * 61.36384 * 5 4 2 7 7 H 1.08995 * 109.52401 * 178.67206 * 6 5 4 8 8 N 1.46500 * 109.49682 * 58.58537 * 6 5 4 9 9 C 1.34782 * 119.99567 * 155.16570 * 8 6 5 10 10 O 1.21679 * 120.00257 * 359.97438 * 9 8 6 11 11 C 1.46730 * 119.99689 * 180.02562 * 9 8 6 12 12 C 1.34872 * 125.05638 * 179.97438 * 11 9 8 13 13 C 1.38946 * 113.65647 * 179.97438 * 12 11 9 14 14 C 1.47334 * 122.96112 * 179.97438 * 13 12 11 15 15 N 1.34779 * 119.99758 * 180.27494 * 14 13 12 16 16 O 1.21614 * 120.00265 * 0.02562 * 14 13 12 17 17 C 1.36660 * 114.07548 * 0.23407 * 13 12 11 18 18 S 1.70605 * 110.52866 * 359.64279 * 17 13 12 19 19 C 1.53193 * 109.31194 * 298.63659 * 6 5 4 20 20 N 1.46924 * 108.77767 * 54.63290 * 19 6 5 21 21 C 1.36939 * 120.63025 * 126.36971 * 20 19 6 22 22 H 1.08003 * 119.99791 * 209.02148 * 21 20 19 23 23 C 1.38804 * 120.00163 * 29.02650 * 21 20 19 24 24 N 1.31629 * 119.99665 * 15.02774 * 23 21 20 25 25 Si 1.86794 * 120.00356 * 195.03148 * 23 21 20 26 26 H 1.48506 * 109.46939 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47714 * 119.99586 * 25 23 21 28 28 H 1.48504 * 109.47075 * 240.00242 * 25 23 21 29 29 H 1.08993 * 109.47685 * 299.64347 * 1 2 3 30 30 H 1.09004 * 109.47151 * 59.65031 * 1 2 3 31 31 H 1.09005 * 109.46645 * 179.64474 * 1 2 3 32 32 H 1.09003 * 109.50076 * 305.52559 * 4 2 1 33 33 H 1.09000 * 109.50089 * 65.58832 * 4 2 1 34 34 H 1.08996 * 109.46040 * 301.34268 * 5 4 2 35 35 H 1.08998 * 109.46199 * 181.38256 * 5 4 2 36 36 H 0.96998 * 119.99903 * 335.16467 * 8 6 5 37 37 H 1.07995 * 123.17421 * 359.97438 * 12 11 9 38 38 H 0.96997 * 119.99924 * 179.72848 * 15 14 13 39 39 H 0.96999 * 119.99912 * 359.72787 * 15 14 13 40 40 H 1.07997 * 124.73553 * 179.74325 * 17 13 12 41 41 H 1.08994 * 109.58838 * 174.42765 * 19 6 5 42 42 H 1.09004 * 109.58543 * 294.85063 * 19 6 5 43 43 H 0.97003 * 119.99309 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7293 -1.2454 5 6 3.5675 -0.8478 -1.1701 6 6 3.9570 -1.6655 0.0635 7 1 5.0412 -1.7698 0.1040 8 7 3.3407 -2.9923 -0.0147 9 6 3.8955 -4.0326 0.6384 10 8 4.9084 -3.8699 1.2926 11 6 3.2785 -5.3615 0.5595 12 6 3.7458 -6.4700 1.1695 13 6 2.9755 -7.6023 0.9346 14 6 3.2992 -8.9235 1.5006 15 7 2.5128 -9.9839 1.2291 16 8 4.2785 -9.0583 2.2091 17 6 1.8943 -7.3836 0.1279 18 16 1.8208 -5.7454 -0.3429 19 6 3.4651 -0.9468 1.3238 20 7 2.0226 -0.6995 1.1945 21 6 1.1536 -1.1134 2.1686 22 1 0.1360 -1.3680 1.9117 23 6 1.5808 -1.2059 3.4861 24 7 2.7038 -0.6274 3.8559 25 14 0.5620 -2.1512 4.7342 26 1 -0.6467 -2.7027 4.0706 27 1 1.3713 -3.2636 5.2932 28 1 0.1510 -1.2382 5.8309 29 1 -0.3634 0.5082 0.8931 30 1 -0.3634 0.5193 -0.8869 31 1 -0.3633 -1.0277 -0.0064 32 1 1.6031 -1.7253 -1.2913 33 1 1.7655 -0.1671 -2.1368 34 1 4.0061 0.1475 -1.0993 35 1 3.9379 -1.3446 -2.0668 36 1 2.5334 -3.1220 -0.5366 37 1 4.6348 -6.4769 1.7826 38 1 2.7281 -10.8546 1.5985 39 1 1.7316 -9.8764 0.6643 40 1 1.1845 -8.1416 -0.1687 41 1 3.6519 -1.5715 2.1972 42 1 3.9902 0.0023 1.4317 43 1 3.0024 -0.6923 4.7765 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072099576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:53 Heat of formation + Delta-G solvation = -49.460415 kcal Electronic energy + Delta-G solvation = -27606.517821 eV Core-core repulsion = 23777.527620 eV Total energy + Delta-G solvation = -3828.990201 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25948 -40.77468 -39.26956 -37.84189 -35.82295 -34.83179 -34.51635 -32.56453 -31.74142 -30.68111 -27.88565 -26.91816 -26.47517 -24.56639 -23.83626 -22.12713 -21.74875 -20.52377 -20.09722 -19.92118 -18.25076 -18.11918 -18.06942 -17.19220 -16.75622 -16.52182 -16.20231 -15.87435 -15.78507 -15.56427 -15.29119 -14.88256 -14.68604 -14.50206 -14.24221 -13.97222 -13.80577 -13.78052 -13.56306 -13.01267 -12.87484 -12.63734 -12.51820 -12.40852 -12.37328 -12.09758 -12.03997 -11.56373 -11.33539 -11.22323 -11.11098 -11.02777 -10.77776 -10.53115 -10.22766 -9.93928 -9.65708 -8.57141 -7.81241 -5.26119 -0.69030 0.29309 0.54211 0.66231 1.38668 1.42291 1.50158 1.95435 2.16243 2.35755 2.50362 2.57573 3.35731 3.64287 3.71974 3.91458 4.01528 4.05273 4.09684 4.11707 4.20013 4.49831 4.58985 4.66347 4.75282 4.83064 4.94943 4.95550 4.98039 5.07941 5.10066 5.14024 5.28799 5.33716 5.59485 5.62310 5.66609 5.74891 5.76129 5.83714 6.38891 6.45274 6.53902 7.19483 7.20674 7.26647 7.94482 8.44892 9.24173 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.011582 B = 0.004314 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.038506 B = 6489.517712 C = 7403.663444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.152 3.848 3 H 0.014 0.986 4 C -0.120 4.120 5 C -0.111 4.111 6 C 0.126 3.874 7 H 0.065 0.935 8 N -0.683 5.683 9 C 0.578 3.422 10 O -0.584 6.584 11 C -0.298 4.298 12 C -0.034 4.034 13 C -0.190 4.190 14 C 0.582 3.418 15 N -0.821 5.821 16 O -0.594 6.594 17 C -0.172 4.172 18 S 0.334 5.666 19 C 0.170 3.830 20 N -0.595 5.595 21 C -0.230 4.230 22 H 0.083 0.917 23 C -0.057 4.057 24 N -0.938 5.938 25 Si 0.942 3.058 26 H -0.250 1.250 27 H -0.310 1.310 28 H -0.295 1.295 29 H 0.034 0.966 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.405 0.595 37 H 0.124 0.876 38 H 0.415 0.585 39 H 0.420 0.580 40 H 0.233 0.767 41 H 0.046 0.954 42 H -0.002 1.002 43 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.706 -13.872 -18.549 24.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.031 0.969 4 C -0.159 4.159 5 C -0.149 4.149 6 C 0.020 3.980 7 H 0.083 0.917 8 N -0.333 5.333 9 C 0.365 3.635 10 O -0.466 6.466 11 C -0.418 4.418 12 C -0.067 4.067 13 C -0.208 4.208 14 C 0.366 3.634 15 N -0.386 5.386 16 O -0.476 6.476 17 C -0.312 4.312 18 S 0.602 5.398 19 C 0.043 3.957 20 N -0.319 5.319 21 C -0.361 4.361 22 H 0.100 0.900 23 C -0.251 4.251 24 N -0.586 5.586 25 Si 0.772 3.228 26 H -0.174 1.174 27 H -0.239 1.239 28 H -0.223 1.223 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.242 0.758 37 H 0.142 0.858 38 H 0.248 0.752 39 H 0.252 0.748 40 H 0.249 0.751 41 H 0.065 0.935 42 H 0.016 0.984 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -8.365 -12.753 -18.480 23.961 hybrid contribution 0.805 -1.247 2.572 2.969 sum -7.559 -14.001 -15.908 22.500 Atomic orbital electron populations 1.21733 0.94405 1.01605 1.00872 1.20802 0.94389 0.93193 0.86883 0.96877 1.21981 0.94428 1.01192 0.98288 1.21689 0.97617 0.99908 0.95687 1.21579 0.96369 0.81894 0.98120 0.91657 1.45571 1.29433 1.07919 1.50369 1.17390 0.83474 0.83836 0.78829 1.90786 1.27397 1.85325 1.43096 1.24157 1.06580 0.97432 1.13598 1.20253 0.99457 0.90632 0.96314 1.18835 0.99873 0.94599 1.07445 1.17735 0.82007 0.84655 0.78989 1.43378 1.30300 1.10761 1.54132 1.90837 1.30244 1.85990 1.40534 1.26683 1.00697 1.04044 0.99759 1.82686 1.17060 0.98614 1.41475 1.20854 0.84445 0.95318 0.95102 1.44291 1.02074 1.65499 1.20029 1.19490 0.95114 1.35236 0.86255 0.89959 1.25727 0.98801 1.01535 0.99061 1.70167 1.25279 1.46980 1.16157 0.85558 0.79102 0.78028 0.80114 1.17374 1.23879 1.22292 0.94716 0.90483 0.92589 0.91711 0.88705 0.90656 0.89344 0.75773 0.85793 0.75222 0.74785 0.75096 0.93541 0.98440 0.95075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 7.94 71.98 0.57 -3.46 16 2 C 0.15 5.46 3.50 44.97 0.16 5.62 16 3 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 4 C -0.12 -3.12 5.21 30.67 0.16 -2.96 16 5 C -0.11 -3.08 5.59 30.62 0.17 -2.90 16 6 C 0.13 4.81 2.81 45.07 0.13 4.94 16 7 H 0.07 2.66 7.58 -2.39 -0.02 2.64 16 8 N -0.68 -24.11 4.91 -446.08 -2.19 -26.30 16 9 C 0.58 23.46 7.75 86.46 0.67 24.13 16 10 O -0.58 -29.61 16.46 -4.28 -0.07 -29.68 16 11 C -0.30 -9.62 6.37 23.72 0.15 -9.47 16 12 C -0.03 -1.15 9.47 21.67 0.21 -0.95 16 13 C -0.19 -4.62 5.82 -21.08 -0.12 -4.74 16 14 C 0.58 14.32 8.06 86.64 0.70 15.02 16 15 N -0.82 -9.59 8.84 -175.95 -1.56 -11.14 16 16 O -0.59 -21.33 17.52 -4.08 -0.07 -21.41 16 17 C -0.17 -2.43 10.41 67.45 0.70 -1.73 16 18 S 0.33 6.06 22.09 -56.49 -1.25 4.82 16 19 C 0.17 8.43 4.89 86.36 0.42 8.85 16 20 N -0.60 -27.82 2.91 -675.23 -1.96 -29.78 16 21 C -0.23 -11.97 8.60 84.03 0.72 -11.25 16 22 H 0.08 4.01 6.21 -2.91 -0.02 3.99 16 23 C -0.06 -3.24 4.96 84.86 0.42 -2.82 16 24 N -0.94 -58.69 11.14 21.65 0.24 -58.45 16 25 Si 0.94 46.50 29.58 68.60 2.03 48.53 16 26 H -0.25 -11.06 7.11 99.48 0.71 -10.36 16 27 H -0.31 -16.29 7.11 99.48 0.71 -15.58 16 28 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 29 H 0.03 1.26 7.62 -2.39 -0.02 1.24 16 30 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.06 1.70 7.45 -2.38 -0.02 1.68 16 32 H 0.06 1.57 6.40 -2.39 -0.02 1.55 16 33 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.09 1.91 8.14 -2.39 -0.02 1.90 16 36 H 0.40 11.67 5.85 -92.71 -0.54 11.12 16 37 H 0.12 4.99 7.95 -2.91 -0.02 4.97 16 38 H 0.42 3.86 8.93 -92.71 -0.83 3.03 16 39 H 0.42 1.29 7.29 -92.71 -0.68 0.62 16 40 H 0.23 0.45 6.99 -2.91 -0.02 0.43 16 41 H 0.05 2.81 6.06 -2.39 -0.01 2.79 16 42 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 43 H 0.24 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -88.07 361.62 -0.73 -88.80 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -0.96 Total: 16.32 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: 5.06 Total: 18.30 kcal Atomic # 7 Polarization: -120.20 SS G_CDS: -5.47 Total: -125.67 kcal Atomic # 8 Polarization: -50.95 SS G_CDS: -0.14 Total: -51.09 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Atomic # 16 Polarization: 6.06 SS G_CDS: -1.25 Total: 4.82 kcal Total: -88.07 -0.73 -88.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072099576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.342 kcal (2) G-P(sol) polarization free energy of solvation -88.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds