Wall clock time and date at job start Tue Mar 31 2020 20:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.58539 * 2 1 4 4 C 1.53193 * 109.58130 * 239.72346 * 2 1 3 5 5 C 1.53042 * 109.31179 * 185.57744 * 4 2 1 6 6 C 1.53038 * 109.53928 * 61.36499 * 5 4 2 7 7 H 1.08997 * 109.49617 * 58.62098 * 6 5 4 8 8 N 1.46499 * 109.49494 * 178.68708 * 6 5 4 9 9 C 1.34777 * 119.99444 * 204.93599 * 8 6 5 10 10 O 1.21681 * 120.00476 * 359.97438 * 9 8 6 11 11 C 1.46735 * 119.99952 * 179.72519 * 9 8 6 12 12 C 1.34874 * 125.05809 * 180.27977 * 11 9 8 13 13 C 1.38937 * 113.65612 * 180.02562 * 12 11 9 14 14 C 1.47334 * 122.96541 * 180.02562 * 13 12 11 15 15 N 1.34773 * 120.00433 * 179.97438 * 14 13 12 16 16 O 1.21622 * 119.99476 * 359.97438 * 14 13 12 17 17 C 1.36658 * 114.07592 * 359.97438 * 13 12 11 18 18 S 1.70602 * 110.53185 * 359.72672 * 17 13 12 19 19 C 1.53191 * 109.33705 * 298.65436 * 6 5 4 20 20 N 1.46924 * 109.58942 * 120.43944 * 2 1 3 21 21 C 1.36942 * 120.62841 * 353.38779 * 20 2 1 22 22 H 1.07997 * 119.99741 * 29.55900 * 21 20 2 23 23 C 1.38808 * 119.99772 * 209.54886 * 21 20 2 24 24 N 1.31622 * 120.00127 * 16.11528 * 23 21 20 25 25 Si 1.86800 * 119.99996 * 196.11258 * 23 21 20 26 26 H 1.48493 * 109.46994 * 94.02180 * 25 23 21 27 27 H 1.48501 * 109.47166 * 214.02508 * 25 23 21 28 28 H 1.48503 * 109.47144 * 334.02338 * 25 23 21 29 29 H 1.09001 * 109.47456 * 180.28249 * 1 2 3 30 30 H 1.09005 * 109.46856 * 300.27569 * 1 2 3 31 31 H 1.08996 * 109.47507 * 60.27387 * 1 2 3 32 32 H 1.09003 * 109.49959 * 65.62553 * 4 2 1 33 33 H 1.08996 * 109.50152 * 305.53095 * 4 2 1 34 34 H 1.09001 * 109.45588 * 301.34279 * 5 4 2 35 35 H 1.09000 * 109.45228 * 181.38599 * 5 4 2 36 36 H 0.96998 * 120.00705 * 24.93428 * 8 6 5 37 37 H 1.08002 * 123.17265 * 0.02562 * 12 11 9 38 38 H 0.97006 * 119.99645 * 359.97438 * 15 14 13 39 39 H 0.96995 * 120.00177 * 180.02562 * 15 14 13 40 40 H 1.08000 * 124.73699 * 180.02562 * 17 13 12 41 41 H 1.09000 * 109.58409 * 174.40680 * 19 6 5 42 42 H 1.09005 * 109.58721 * 294.82989 * 19 6 5 43 43 H 0.97000 * 119.99810 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7277 -1.2465 5 6 3.5674 -0.8464 -1.1715 6 6 3.9569 -1.6659 0.0610 7 1 3.4988 -2.6531 0.0011 8 7 5.4142 -1.8055 0.1147 9 6 5.9677 -2.8485 0.7645 10 8 5.2570 -3.6740 1.3069 11 6 7.4272 -2.9917 0.8132 12 6 8.0872 -3.9946 1.4278 13 6 9.4694 -3.8966 1.3270 14 6 10.3886 -4.8820 1.9226 15 7 11.7207 -4.7286 1.7877 16 8 9.9451 -5.8339 2.5361 17 6 9.9012 -2.8061 0.6257 18 16 8.5749 -1.8866 0.0728 19 6 3.4650 -0.9495 1.3226 20 7 2.0226 -0.7013 1.1934 21 6 1.1538 -1.1161 2.1672 22 1 0.1385 -1.3785 1.9089 23 6 1.5781 -1.1995 3.4862 24 7 2.6852 -0.5944 3.8609 25 14 0.5778 -2.1706 4.7295 26 1 1.1098 -3.5540 4.8208 27 1 0.6703 -1.5158 6.0591 28 1 -0.8422 -2.2140 4.2969 29 1 -0.3634 -1.0276 0.0051 30 1 -0.3633 0.5181 0.8876 31 1 -0.3634 0.5095 -0.8924 32 1 1.7658 -0.1639 -2.1371 33 1 1.6028 -1.7235 -1.2938 34 1 4.0060 0.1488 -1.0993 35 1 3.9375 -1.3421 -2.0690 36 1 5.9808 -1.1473 -0.3174 37 1 7.5882 -4.7982 1.9492 38 1 12.0744 -3.9695 1.2981 39 1 12.3258 -5.3775 2.1796 40 1 10.9375 -2.5630 0.4425 41 1 3.6518 -1.5760 2.1948 42 1 3.9902 -0.0007 1.4324 43 1 2.9815 -0.6524 4.7827 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072099577.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:56 Heat of formation + Delta-G solvation = -23.288094 kcal Electronic energy + Delta-G solvation = -26766.593887 eV Core-core repulsion = 22938.738604 eV Total energy + Delta-G solvation = -3827.855284 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.17500 -39.47280 -37.77188 -36.82022 -34.45121 -34.04215 -32.81103 -31.13038 -29.97257 -29.59465 -26.26448 -25.64927 -24.98509 -23.19764 -22.22768 -20.75281 -20.27380 -19.48890 -19.18620 -18.66615 -17.32514 -17.16988 -16.43164 -15.70687 -15.57120 -15.21144 -15.05562 -14.56239 -14.38590 -13.87611 -13.79350 -13.54632 -13.41147 -13.31184 -12.93107 -12.86811 -12.63467 -12.39415 -11.86657 -11.49970 -11.45618 -11.12043 -10.87215 -10.69267 -10.55167 -10.38735 -10.33306 -10.24553 -10.03789 -9.95721 -9.85704 -9.51002 -9.46376 -9.19029 -8.90576 -8.59327 -8.39272 -6.59628 -5.71935 -3.16443 0.15506 1.12116 1.49253 1.54913 3.04391 3.14106 3.40081 3.46882 3.48701 3.52853 3.54631 4.44982 4.56634 4.70590 4.89883 4.95787 5.32350 5.36981 5.47774 5.52722 5.57274 5.65835 5.84252 5.96098 6.03073 6.08832 6.26680 6.30146 6.39260 6.44168 6.45082 6.47677 6.62572 6.71736 6.86351 6.97538 7.05213 7.13509 7.30644 7.73157 7.78247 7.90066 7.95474 8.46908 8.53339 9.26674 9.91049 10.46101 11.36336 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013952 B = 0.003187 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.356171 B = 8782.461196 C =10247.460939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.117 3.883 7 H 0.085 0.915 8 N -0.714 5.714 9 C 0.583 3.417 10 O -0.512 6.512 11 C -0.251 4.251 12 C -0.021 4.021 13 C -0.160 4.160 14 C 0.583 3.417 15 N -0.851 5.851 16 O -0.532 6.532 17 C -0.211 4.211 18 S 0.246 5.754 19 C 0.168 3.832 20 N -0.582 5.582 21 C -0.255 4.255 22 H 0.071 0.929 23 C 0.008 3.992 24 N -0.899 5.899 25 Si 0.899 3.101 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.279 1.279 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.388 0.612 37 H 0.165 0.835 38 H 0.399 0.601 39 H 0.406 0.594 40 H 0.175 0.825 41 H 0.094 0.906 42 H 0.018 0.982 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.864 0.440 -12.579 21.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.012 3.988 7 H 0.103 0.897 8 N -0.365 5.365 9 C 0.366 3.634 10 O -0.388 6.388 11 C -0.372 4.372 12 C -0.052 4.052 13 C -0.179 4.179 14 C 0.367 3.633 15 N -0.416 5.416 16 O -0.409 6.409 17 C -0.351 4.351 18 S 0.514 5.486 19 C 0.041 3.959 20 N -0.306 5.306 21 C -0.384 4.384 22 H 0.088 0.912 23 C -0.191 4.191 24 N -0.543 5.543 25 Si 0.729 3.271 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.204 1.204 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.221 0.779 37 H 0.182 0.818 38 H 0.228 0.772 39 H 0.237 0.763 40 H 0.192 0.808 41 H 0.112 0.888 42 H 0.036 0.964 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 16.730 0.663 -12.503 20.896 hybrid contribution 0.794 -1.262 1.273 1.961 sum 17.524 -0.599 -11.230 20.823 Atomic orbital electron populations 1.21800 0.95960 1.01458 1.00161 1.20490 0.93115 0.93534 0.87028 0.95741 1.22051 0.94142 1.01413 0.98979 1.21686 0.97574 0.99610 0.96600 1.22080 0.76920 1.01225 0.98571 0.89661 1.45968 1.09027 1.26051 1.55419 1.16881 0.84837 0.82236 0.79398 1.90901 1.61439 1.42047 1.44400 1.24433 0.98300 1.02900 1.11520 1.20356 0.91436 0.97896 0.95486 1.19023 0.94293 0.98169 1.06372 1.17634 0.82238 0.84475 0.78966 1.43657 1.06980 1.31243 1.59673 1.90877 1.77004 1.31658 1.41367 1.26027 1.05292 0.99828 1.03962 1.82974 0.92978 1.24479 1.48197 1.21075 0.83708 0.96917 0.94193 1.44013 1.02562 1.64588 1.19420 1.19143 0.94984 1.38247 0.86028 0.91166 1.25076 0.97829 0.99205 0.97038 1.70005 1.24327 1.43260 1.16725 0.86325 0.79674 0.80224 0.80842 1.21274 1.21847 1.20381 0.92761 0.92001 0.94360 0.92603 0.91997 0.92216 0.92984 0.77863 0.81756 0.77227 0.76309 0.80800 0.88825 0.96406 0.93717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.95 37.16 0.30 -2.25 16 2 C 0.16 3.34 3.50 -67.60 -0.24 3.10 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.10 5.37 -26.61 -0.14 -2.24 16 5 C -0.12 -1.83 5.35 -26.69 -0.14 -1.97 16 6 C 0.12 2.25 2.60 -67.81 -0.18 2.07 16 7 H 0.09 1.87 7.58 -51.93 -0.39 1.48 16 8 N -0.71 -11.66 5.08 -54.98 -0.28 -11.94 16 9 C 0.58 10.54 7.75 -12.83 -0.10 10.44 16 10 O -0.51 -11.74 16.45 5.21 0.09 -11.65 16 11 C -0.25 -3.55 6.37 -37.34 -0.24 -3.79 16 12 C -0.02 -0.30 9.47 -40.52 -0.38 -0.69 16 13 C -0.16 -1.80 5.82 -106.51 -0.62 -2.42 16 14 C 0.58 6.71 8.06 -12.56 -0.10 6.61 16 15 N -0.85 -5.33 8.84 30.41 0.27 -5.06 16 16 O -0.53 -8.60 17.53 5.26 0.09 -8.51 16 17 C -0.21 -1.62 10.41 30.16 0.31 -1.30 16 18 S 0.25 2.16 22.09 -107.50 -2.37 -0.22 16 19 C 0.17 4.05 4.86 -3.71 -0.02 4.03 16 20 N -0.58 -14.44 2.99 -164.77 -0.49 -14.93 16 21 C -0.25 -6.98 8.58 -15.06 -0.13 -7.11 16 22 H 0.07 1.88 6.22 -52.49 -0.33 1.55 16 23 C 0.01 0.22 4.92 -17.43 -0.09 0.13 16 24 N -0.90 -26.81 11.25 55.49 0.62 -26.18 16 25 Si 0.90 22.67 29.58 -169.99 -5.03 17.64 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 29 H 0.05 1.03 7.40 -51.93 -0.38 0.65 16 30 H 0.06 1.25 7.66 -51.93 -0.40 0.85 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.39 4.94 7.68 -40.82 -0.31 4.63 16 37 H 0.17 2.69 7.95 -52.49 -0.42 2.27 16 38 H 0.40 1.16 7.29 -40.82 -0.30 0.86 16 39 H 0.41 2.04 8.93 -40.82 -0.36 1.67 16 40 H 0.17 0.57 6.99 -52.49 -0.37 0.21 16 41 H 0.09 2.68 6.15 -51.93 -0.32 2.36 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 365.30 15.07 5.51 5.51 Total: -1.00 -36.42 365.30 -9.04 -45.46 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -5.68 Total: 5.27 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -1.76 Total: 4.62 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: 0.12 Total: -58.12 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: 0.18 Total: -20.16 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.03 Total: 17.64 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.37 Total: -0.22 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.42 -9.04 -45.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072099577.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.172 kcal (2) G-P(sol) polarization free energy of solvation -36.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds