Wall clock time and date at job start Tue Mar 31 2020 20:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.58024 * 2 1 4 4 C 1.53184 * 109.70630 * 120.35804 * 2 1 3 5 5 C 1.53034 * 109.31491 * 174.49553 * 4 2 1 6 6 C 1.53074 * 109.66098 * 298.70150 * 5 4 2 7 7 H 1.09007 * 109.38873 * 301.27801 * 6 5 4 8 8 N 1.46496 * 109.62501 * 181.16933 * 6 5 4 9 9 C 1.34774 * 119.99884 * 155.10669 * 8 6 5 10 10 O 1.21680 * 120.00203 * 359.97438 * 9 8 6 11 11 C 1.46738 * 120.00046 * 179.97438 * 9 8 6 12 12 C 1.34872 * 125.05645 * 179.72228 * 11 9 8 13 13 C 1.38936 * 113.65545 * 179.80261 * 12 11 9 14 14 C 1.47338 * 122.96646 * 180.21877 * 13 12 11 15 15 N 1.34775 * 119.99993 * 180.26517 * 14 13 12 16 16 O 1.21618 * 119.99748 * 0.26558 * 14 13 12 17 17 C 1.36669 * 114.07455 * 0.48232 * 13 12 11 18 18 S 1.70589 * 110.52884 * 359.73864 * 17 13 12 19 19 C 1.53194 * 109.29545 * 61.14783 * 6 5 4 20 20 N 1.46921 * 109.58650 * 239.72244 * 2 1 3 21 21 C 1.36932 * 120.63662 * 6.43684 * 20 2 1 22 22 H 1.08005 * 119.99924 * 330.17587 * 21 20 2 23 23 C 1.38810 * 120.00343 * 150.17204 * 21 20 2 24 24 N 1.31613 * 120.00273 * 344.50769 * 23 21 20 25 25 Si 1.86803 * 119.99828 * 164.50060 * 23 21 20 26 26 H 1.48507 * 109.47194 * 60.00090 * 25 23 21 27 27 H 1.48502 * 109.47096 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47239 * 300.00059 * 25 23 21 29 29 H 1.09008 * 109.47070 * 180.27991 * 1 2 3 30 30 H 1.08998 * 109.47492 * 300.27891 * 1 2 3 31 31 H 1.08994 * 109.47466 * 60.28341 * 1 2 3 32 32 H 1.09005 * 109.49830 * 294.44436 * 4 2 1 33 33 H 1.08997 * 109.49797 * 54.54141 * 4 2 1 34 34 H 1.09003 * 109.46150 * 58.65633 * 5 4 2 35 35 H 1.09000 * 109.46635 * 178.62666 * 5 4 2 36 36 H 0.96995 * 120.00177 * 335.10192 * 8 6 5 37 37 H 1.08004 * 123.17369 * 359.97438 * 12 11 9 38 38 H 0.96997 * 120.00256 * 359.97438 * 15 14 13 39 39 H 0.97006 * 120.00093 * 180.02562 * 15 14 13 40 40 H 1.07998 * 124.73486 * 179.77109 * 17 13 12 41 41 H 1.08993 * 109.58797 * 185.72091 * 19 6 5 42 42 H 1.09000 * 109.58311 * 65.43994 * 19 6 5 43 43 H 0.96997 * 120.00271 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0465 -0.7289 1.2444 5 6 3.5706 -0.8442 1.1673 6 6 3.9636 -1.6590 -0.0676 7 1 3.5091 -2.6480 -0.0082 8 7 5.4213 -1.7926 -0.1254 9 6 5.9773 -2.8314 -0.7798 10 8 5.2685 -3.6584 -1.3223 11 6 7.4374 -2.9649 -0.8383 12 6 8.0998 -3.9629 -1.4583 13 6 9.4821 -3.8538 -1.3696 14 6 10.4039 -4.8294 -1.9774 15 7 11.7358 -4.6680 -1.8498 16 8 9.9628 -5.7802 -2.5942 17 6 9.9113 -2.7648 -0.6641 18 16 8.5826 -1.8529 -0.1046 19 6 3.4654 -0.9422 -1.3265 20 7 2.0225 -0.6979 -1.1954 21 6 1.1534 -1.1132 -2.1687 22 1 0.1404 -1.3827 -1.9088 23 6 1.5743 -1.1877 -3.4893 24 7 2.6832 -0.5843 -3.8617 25 14 0.5670 -2.1445 -4.7380 26 1 -0.7950 -1.5595 -4.8281 27 1 1.2265 -2.0713 -6.0666 28 1 0.4691 -3.5637 -4.3121 29 1 -0.3634 -1.0277 0.0050 30 1 -0.3634 0.5181 0.8874 31 1 -0.3634 0.5094 -0.8924 32 1 1.7689 -0.1673 2.1364 33 1 1.6081 -1.7257 1.2904 34 1 4.0071 0.1520 1.0964 35 1 3.9430 -1.3409 2.0632 36 1 5.9863 -1.1335 0.3072 37 1 7.6027 -4.7691 -1.9772 38 1 12.0876 -3.9095 -1.3582 39 1 12.3428 -5.3101 -2.2503 40 1 10.9471 -2.5161 -0.4862 41 1 3.6525 -1.5662 -2.2004 42 1 3.9883 0.0077 -1.4371 43 1 2.9771 -0.6361 -4.7846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072099578.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:59 Heat of formation + Delta-G solvation = -23.281646 kcal Electronic energy + Delta-G solvation = -26765.234799 eV Core-core repulsion = 22937.379795 eV Total energy + Delta-G solvation = -3827.855004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.17380 -39.47002 -37.76628 -36.81889 -34.44868 -34.04121 -32.80813 -31.12841 -29.97064 -29.59169 -26.26527 -25.64824 -24.98347 -23.19728 -22.22396 -20.75188 -20.27171 -19.48651 -19.18433 -18.66528 -17.32416 -17.16842 -16.42875 -15.70267 -15.57021 -15.21152 -15.05060 -14.56375 -14.38324 -13.88060 -13.79296 -13.54525 -13.41062 -13.31038 -12.92612 -12.86721 -12.63040 -12.38957 -11.86516 -11.49850 -11.45196 -11.11455 -10.87829 -10.66232 -10.54802 -10.39985 -10.33249 -10.25870 -10.03700 -9.96739 -9.85366 -9.51089 -9.46297 -9.18923 -8.90469 -8.59300 -8.38778 -6.58637 -5.71560 -3.16424 0.15615 1.12209 1.49385 1.55025 3.04464 3.14113 3.39688 3.46465 3.49188 3.52508 3.54616 4.45115 4.56805 4.70699 4.89971 4.95871 5.32377 5.37248 5.48055 5.52844 5.57570 5.66140 5.84366 5.96325 6.03128 6.09118 6.26983 6.30271 6.39582 6.44220 6.45269 6.47927 6.62664 6.71944 6.86645 6.97673 7.05706 7.13789 7.30930 7.73984 7.78341 7.89732 7.95563 8.47068 8.53850 9.27055 9.91314 10.46632 11.36733 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013942 B = 0.003187 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.875592 B = 8782.285220 C =10248.717318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.117 3.883 7 H 0.085 0.915 8 N -0.714 5.714 9 C 0.583 3.417 10 O -0.512 6.512 11 C -0.251 4.251 12 C -0.021 4.021 13 C -0.160 4.160 14 C 0.583 3.417 15 N -0.851 5.851 16 O -0.532 6.532 17 C -0.211 4.211 18 S 0.246 5.754 19 C 0.168 3.832 20 N -0.582 5.582 21 C -0.255 4.255 22 H 0.070 0.930 23 C 0.008 3.992 24 N -0.900 5.900 25 Si 0.900 3.100 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.053 0.947 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.388 0.612 37 H 0.165 0.835 38 H 0.399 0.601 39 H 0.406 0.594 40 H 0.175 0.825 41 H 0.094 0.906 42 H 0.018 0.982 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.899 0.504 12.459 21.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.012 3.988 7 H 0.103 0.897 8 N -0.364 5.364 9 C 0.367 3.633 10 O -0.388 6.388 11 C -0.372 4.372 12 C -0.052 4.052 13 C -0.179 4.179 14 C 0.367 3.633 15 N -0.416 5.416 16 O -0.409 6.409 17 C -0.351 4.351 18 S 0.514 5.486 19 C 0.041 3.959 20 N -0.306 5.306 21 C -0.385 4.385 22 H 0.087 0.913 23 C -0.191 4.191 24 N -0.543 5.543 25 Si 0.730 3.270 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.209 1.209 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.221 0.779 37 H 0.182 0.818 38 H 0.228 0.772 39 H 0.237 0.763 40 H 0.192 0.808 41 H 0.112 0.888 42 H 0.036 0.964 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.776 0.722 12.378 20.860 hybrid contribution 0.777 -1.246 -1.275 1.944 sum 17.553 -0.523 11.103 20.776 Atomic orbital electron populations 1.21797 0.95953 1.01400 1.00220 1.20491 0.93109 0.93554 0.87031 0.95758 1.22041 0.94127 1.01412 0.98976 1.21687 0.97555 0.99627 0.96582 1.22076 0.76905 1.01279 0.98563 0.89681 1.45955 1.08993 1.26237 1.55254 1.16878 0.84824 0.82234 0.79403 1.90900 1.61584 1.41796 1.44508 1.24432 0.98291 1.02858 1.11574 1.20355 0.91409 0.97966 0.95446 1.19027 0.94291 0.98303 1.06242 1.17634 0.82242 0.84384 0.79049 1.43658 1.06959 1.31625 1.59316 1.90875 1.77124 1.31514 1.41390 1.26028 1.05294 0.99898 1.03905 1.82971 0.92954 1.24400 1.48278 1.21068 0.83684 0.96928 0.94227 1.43993 1.02483 1.64778 1.19296 1.19076 0.95145 1.38301 0.85961 0.91280 1.25081 0.97790 0.99159 0.97068 1.69979 1.24186 1.43411 1.16773 0.86409 0.79399 0.80506 0.80676 1.20941 1.21667 1.20855 0.92797 0.94366 0.91954 0.92598 0.91999 0.92241 0.92991 0.77867 0.81753 0.77229 0.76308 0.80801 0.88822 0.96425 0.93645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.96 37.16 0.30 -2.24 16 2 C 0.16 3.34 3.49 -67.61 -0.24 3.10 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.10 5.38 -26.62 -0.14 -2.24 16 5 C -0.12 -1.83 5.36 -26.68 -0.14 -1.97 16 6 C 0.12 2.25 2.61 -67.79 -0.18 2.07 16 7 H 0.09 1.87 7.58 -51.93 -0.39 1.47 16 8 N -0.71 -11.66 5.08 -54.96 -0.28 -11.94 16 9 C 0.58 10.54 7.75 -12.83 -0.10 10.44 16 10 O -0.51 -11.73 16.46 5.21 0.09 -11.64 16 11 C -0.25 -3.55 6.37 -37.34 -0.24 -3.79 16 12 C -0.02 -0.30 9.47 -40.52 -0.38 -0.69 16 13 C -0.16 -1.80 5.82 -106.50 -0.62 -2.42 16 14 C 0.58 6.71 8.06 -12.56 -0.10 6.61 16 15 N -0.85 -5.33 8.84 30.41 0.27 -5.06 16 16 O -0.53 -8.60 17.53 5.26 0.09 -8.50 16 17 C -0.21 -1.62 10.41 30.17 0.31 -1.31 16 18 S 0.25 2.16 22.09 -107.50 -2.37 -0.22 16 19 C 0.17 4.05 4.85 -3.71 -0.02 4.03 16 20 N -0.58 -14.45 2.99 -164.78 -0.49 -14.94 16 21 C -0.26 -7.01 8.57 -15.06 -0.13 -7.14 16 22 H 0.07 1.84 6.24 -52.48 -0.33 1.52 16 23 C 0.01 0.24 4.94 -17.43 -0.09 0.15 16 24 N -0.90 -26.81 11.23 55.49 0.62 -26.19 16 25 Si 0.90 22.67 29.58 -169.99 -5.03 17.64 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 29 H 0.05 1.02 7.43 -51.92 -0.39 0.64 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.26 7.63 -51.93 -0.40 0.87 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.39 4.95 7.69 -40.82 -0.31 4.63 16 37 H 0.17 2.68 7.95 -52.48 -0.42 2.27 16 38 H 0.40 1.16 7.29 -40.82 -0.30 0.87 16 39 H 0.41 2.04 8.93 -40.82 -0.36 1.67 16 40 H 0.17 0.58 6.99 -52.49 -0.37 0.21 16 41 H 0.09 2.69 6.15 -51.93 -0.32 2.37 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 365.32 15.07 5.51 5.51 Total: -1.00 -36.38 365.32 -9.04 -45.42 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.68 Total: 5.33 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -1.76 Total: 4.60 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.12 Total: -58.13 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: 0.18 Total: -20.15 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.03 Total: 17.64 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.37 Total: -0.22 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.38 -9.04 -45.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072099578.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.135 kcal (2) G-P(sol) polarization free energy of solvation -36.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds