Wall clock time and date at job start Tue Mar 31 2020 20:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.77527 * 2 1 4 4 C 1.54324 * 110.72264 * 123.24292 * 2 1 3 5 5 N 1.47020 * 107.26765 * 140.55953 * 4 2 1 6 6 C 1.34774 * 125.64637 * 181.02658 * 5 4 2 7 7 O 1.21627 * 120.00188 * 358.06140 * 6 5 4 8 8 C 1.47267 * 120.00066 * 178.06271 * 6 5 4 9 9 C 1.46680 * 126.94439 * 7.80754 * 8 6 5 10 10 C 1.34488 * 106.33507 * 179.89298 * 9 8 6 11 11 N 1.36449 * 108.85562 * 0.37782 * 10 9 8 12 12 H 0.96993 * 124.85162 * 179.77277 * 11 10 9 13 13 C 1.34665 * 110.29582 * 359.74816 * 11 10 9 14 14 C 1.47425 * 108.70799 * 1.05663 * 5 4 2 15 15 C 1.54906 * 104.83244 * 335.87545 * 14 5 4 16 16 H 1.09004 * 111.00655 * 278.93188 * 15 14 5 17 17 N 1.46503 * 111.00677 * 155.07633 * 15 14 5 18 18 C 1.34780 * 119.99139 * 92.80469 * 17 15 14 19 19 O 1.21281 * 120.00512 * 359.97438 * 18 17 15 20 20 C 1.50700 * 119.99275 * 180.02562 * 18 17 15 21 21 S 1.81005 * 109.47025 * 179.97438 * 20 18 17 22 22 C 1.76196 * 100.00083 * 179.97438 * 21 20 18 23 23 H 1.07998 * 120.00189 * 0.02562 * 22 21 20 24 24 C 1.38800 * 120.00080 * 180.02562 * 22 21 20 25 25 N 1.31629 * 119.99974 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 120.00276 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.46980 * 59.99520 * 26 24 22 28 28 H 1.48495 * 109.47202 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.46730 * 300.00058 * 26 24 22 30 30 H 1.09003 * 109.46996 * 183.23564 * 1 2 3 31 31 H 1.09002 * 109.47196 * 303.23011 * 1 2 3 32 32 H 1.09000 * 109.47623 * 63.23813 * 1 2 3 33 33 H 1.08998 * 109.88180 * 259.97337 * 4 2 1 34 34 H 1.09001 * 109.88174 * 21.14168 * 4 2 1 35 35 H 1.08004 * 126.83036 * 0.02562 * 9 8 6 36 36 H 1.07994 * 125.57337 * 180.16813 * 10 9 8 37 37 H 1.08000 * 125.79798 * 179.97438 * 13 11 10 38 38 H 1.08994 * 110.37149 * 217.03161 * 14 5 4 39 39 H 1.09006 * 110.36203 * 94.71016 * 14 5 4 40 40 H 0.96996 * 120.00540 * 272.80725 * 17 15 14 41 41 H 1.08994 * 109.47520 * 299.99576 * 20 18 17 42 42 H 1.09000 * 109.47720 * 60.00173 * 20 18 17 43 43 H 0.97003 * 120.00010 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9166 1.0191 0.0000 4 6 2.0760 -0.7913 1.2072 5 7 3.2445 -1.5506 0.7388 6 6 3.9924 -2.3836 1.4894 7 8 3.7404 -2.5297 2.6703 8 6 5.1147 -3.1167 0.8798 9 6 5.6515 -2.9404 -0.4738 10 6 6.6669 -3.8139 -0.5948 11 7 6.7877 -4.5137 0.5702 12 1 7.4458 -5.2071 0.7346 13 6 5.8632 -4.1039 1.4594 14 6 3.4633 -1.2496 -0.6877 15 6 2.0790 -0.7953 -1.2139 16 1 1.4451 -1.6534 -1.4377 17 7 2.2214 0.0700 -2.3875 18 6 2.1872 -0.4624 -3.6253 19 8 2.0390 -1.6577 -3.7674 20 6 2.3342 0.4275 -4.8325 21 16 2.2478 -0.5763 -6.3362 22 6 2.4413 0.6812 -7.5551 23 1 2.5645 1.7110 -7.2538 24 6 2.4354 0.3484 -8.9026 25 7 2.2857 -0.9068 -9.2698 26 14 2.6413 1.6814 -10.1949 27 1 3.9459 2.3631 -9.9994 28 1 2.6005 1.0701 -11.5476 29 1 1.5415 2.6708 -10.0649 30 1 -0.3633 -1.0261 0.0580 31 1 -0.3634 0.5632 0.8596 32 1 -0.3634 0.4627 -0.9176 33 1 2.3741 -0.1025 1.9977 34 1 1.3130 -1.4760 1.5774 35 1 5.3022 -2.2456 -1.2234 36 1 7.2835 -3.9429 -1.4720 37 1 5.7343 -4.4895 2.4600 38 1 3.7961 -2.1423 -1.2172 39 1 4.1931 -0.4476 -0.7986 40 1 2.3403 1.0259 -2.2738 41 1 1.5313 1.1645 -4.8406 42 1 3.2961 0.9387 -4.7922 43 1 2.2820 -1.1394 -10.2116 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072261910.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:31 Heat of formation + Delta-G solvation = -14.647221 kcal Electronic energy + Delta-G solvation = -26164.842645 eV Core-core repulsion = 22337.362058 eV Total energy + Delta-G solvation = -3827.480587 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.38833 -40.19923 -38.93854 -37.47251 -34.12666 -32.94198 -32.44860 -31.11542 -29.98024 -29.36080 -27.90793 -26.83205 -25.50430 -23.71137 -22.15093 -20.99499 -20.70051 -20.20481 -19.33785 -18.42271 -17.84956 -16.85628 -16.52966 -16.11614 -15.49951 -15.17775 -14.96509 -14.82245 -14.47481 -14.15718 -14.14716 -13.90655 -13.76363 -13.54493 -13.27293 -13.18865 -12.92031 -12.60105 -12.41830 -12.30922 -12.10823 -11.97394 -11.40009 -11.27541 -11.06874 -11.05513 -10.85864 -10.77370 -10.05917 -9.84629 -9.47225 -9.09359 -9.07017 -9.03217 -8.77911 -8.49730 -8.26852 -6.52508 -6.23709 -3.94484 1.59995 2.25370 2.67900 2.96841 2.99677 3.15389 3.21934 3.26641 3.31024 3.43795 3.67064 4.14960 4.18638 4.40051 4.61053 4.71545 4.83003 4.94985 4.98810 5.06915 5.11539 5.14823 5.15839 5.22262 5.41756 5.53877 5.56001 5.57766 5.66378 5.67643 5.74264 5.81311 5.85276 5.90484 6.04359 6.10878 6.17769 6.49849 6.55125 6.69603 7.18205 7.41914 7.57179 7.62636 8.17353 8.32849 8.53676 9.21668 10.83579 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013979 B = 0.002574 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.510260 B =10876.970524 C =12471.534012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.090 0.910 4 C 0.116 3.884 5 N -0.611 5.611 6 C 0.609 3.391 7 O -0.557 6.557 8 C -0.233 4.233 9 C -0.178 4.178 10 C -0.015 4.015 11 N -0.553 5.553 12 H 0.418 0.582 13 C 0.074 3.926 14 C 0.078 3.922 15 C 0.138 3.862 16 H 0.108 0.892 17 N -0.727 5.727 18 C 0.534 3.466 19 O -0.513 6.513 20 C -0.154 4.154 21 S -0.059 6.059 22 C -0.537 4.537 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.918 3.082 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.158 0.842 36 H 0.172 0.828 37 H 0.176 0.824 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.400 0.600 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.643 -0.821 21.577 22.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.109 0.891 4 C -0.007 4.007 5 N -0.345 5.345 6 C 0.401 3.599 7 O -0.437 6.437 8 C -0.244 4.244 9 C -0.201 4.201 10 C -0.143 4.143 11 N -0.148 5.148 12 H 0.254 0.746 13 C -0.063 4.063 14 C -0.046 4.046 15 C 0.031 3.969 16 H 0.126 0.874 17 N -0.381 5.381 18 C 0.320 3.680 19 O -0.386 6.386 20 C -0.305 4.305 21 S 0.168 5.832 22 C -0.685 4.685 23 H 0.090 0.910 24 C -0.135 4.135 25 N -0.503 5.503 26 Si 0.744 3.256 27 H -0.199 1.199 28 H -0.208 1.208 29 H -0.199 1.199 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.175 0.825 36 H 0.189 0.811 37 H 0.193 0.807 38 H 0.118 0.882 39 H 0.091 0.909 40 H 0.235 0.765 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.385 -3.175 21.830 22.708 hybrid contribution 0.721 2.473 -0.685 2.666 sum 6.106 -0.702 21.145 22.020 Atomic orbital electron populations 1.21757 0.93008 1.02690 1.02509 1.22529 0.97230 0.99622 0.93667 0.89126 1.21970 0.87774 0.94629 0.96298 1.48050 1.30267 1.44938 1.11211 1.17028 0.80653 0.77515 0.84700 1.90761 1.71473 1.65958 1.15459 1.20236 1.02643 1.04987 0.96497 1.22684 0.98363 1.02874 0.96178 1.21932 1.03121 0.98370 0.90871 1.41680 1.28453 1.32297 1.12355 0.74596 1.21775 0.91266 0.97566 0.95665 1.23233 0.98017 1.02278 0.81101 1.22104 0.95660 0.94582 0.84544 0.87359 1.45878 1.76632 1.10790 1.04836 1.20371 0.75069 0.89005 0.83548 1.90718 1.46699 1.15503 1.85714 1.23536 1.04931 1.03118 0.98870 1.85401 1.95322 1.10874 0.91606 1.22824 1.57992 0.94893 0.92767 0.90971 1.24986 0.94561 0.96166 0.97819 1.70004 1.46371 1.16592 1.17317 0.86233 0.78860 0.80835 0.79631 1.19943 1.20824 1.19934 0.92019 0.92063 0.91588 0.91154 0.90926 0.82474 0.81126 0.80668 0.88177 0.90855 0.76508 0.89153 0.89122 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.16 37.15 0.34 -0.77 16 2 C -0.11 -0.93 3.19 -88.78 -0.28 -1.21 16 3 H 0.09 0.63 8.00 -51.93 -0.42 0.21 16 4 C 0.12 1.16 6.47 -3.06 -0.02 1.14 16 5 N -0.61 -7.26 3.33 -171.85 -0.57 -7.83 16 6 C 0.61 8.43 7.84 -12.59 -0.10 8.33 16 7 O -0.56 -9.13 17.25 5.25 0.09 -9.04 16 8 C -0.23 -2.81 6.20 -103.35 -0.64 -3.45 16 9 C -0.18 -1.93 9.27 -37.50 -0.35 -2.28 16 10 C -0.02 -0.13 11.89 -16.82 -0.20 -0.33 16 11 N -0.55 -3.93 5.90 -12.84 -0.08 -4.00 16 12 H 0.42 1.45 8.96 -40.82 -0.37 1.08 16 13 C 0.07 0.70 11.70 -16.84 -0.20 0.51 16 14 C 0.08 0.86 5.02 -2.53 -0.01 0.85 16 15 C 0.14 1.51 2.87 -65.78 -0.19 1.32 16 16 H 0.11 1.44 7.45 -51.93 -0.39 1.05 16 17 N -0.73 -8.47 5.20 -51.72 -0.27 -8.74 16 18 C 0.53 9.04 7.85 -10.98 -0.09 8.96 16 19 O -0.51 -10.78 15.50 5.56 0.09 -10.70 16 20 C -0.15 -2.89 6.16 36.01 0.22 -2.67 16 21 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 22 C -0.54 -14.87 9.50 30.94 0.29 -14.58 16 23 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 24 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 25 N -0.87 -25.69 13.22 55.49 0.73 -24.95 16 26 Si 0.92 20.98 29.55 -169.99 -5.02 15.95 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 30 H 0.06 0.51 8.06 -51.93 -0.42 0.10 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.74 7.76 -51.93 -0.40 0.34 16 35 H 0.16 1.68 5.07 -52.48 -0.27 1.42 16 36 H 0.17 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.10 1.23 5.15 -51.93 -0.27 0.96 16 39 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 40 H 0.40 3.49 8.57 -40.82 -0.35 3.15 16 41 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 42 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 374.51 15.07 5.64 5.64 Total: -1.00 -36.93 374.51 -8.71 -45.64 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.80 Total: 3.98 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -1.32 Total: -2.21 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -0.18 Total: -45.52 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.18 Total: -19.74 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.93 -8.71 -45.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072261910.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.994 kcal (2) G-P(sol) polarization free energy of solvation -36.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds