Wall clock time and date at job start Tue Mar 31 2020 20:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 110.92111 * 2 1 4 4 C 1.54912 * 111.00367 * 236.09981 * 2 1 3 5 5 N 1.47426 * 104.83453 * 204.91439 * 4 2 1 6 6 C 1.34772 * 125.65362 * 204.16141 * 5 4 2 7 7 O 1.21629 * 119.99878 * 359.97438 * 6 5 4 8 8 C 1.47261 * 120.00272 * 179.97438 * 6 5 4 9 9 C 1.46688 * 126.94093 * 359.68542 * 8 6 5 10 10 C 1.34491 * 106.33128 * 179.88939 * 9 8 6 11 11 N 1.36448 * 108.85481 * 0.37897 * 10 9 8 12 12 H 0.96998 * 124.85119 * 179.73230 * 11 10 9 13 13 C 1.34658 * 110.30078 * 359.74854 * 11 10 9 14 14 C 1.47031 * 108.70086 * 24.13161 * 5 4 2 15 15 C 1.54327 * 107.26900 * 358.93841 * 14 5 4 16 16 H 1.09005 * 110.71565 * 219.26828 * 15 14 5 17 17 N 1.46497 * 110.71944 * 96.16973 * 15 14 5 18 18 C 1.34780 * 119.99566 * 86.45636 * 17 15 14 19 19 O 1.21280 * 120.00423 * 359.97438 * 18 17 15 20 20 C 1.50701 * 119.99795 * 180.02562 * 18 17 15 21 21 S 1.81002 * 109.47156 * 179.97438 * 20 18 17 22 22 C 1.76193 * 100.00049 * 180.02562 * 21 20 18 23 23 H 1.08005 * 120.00026 * 359.97438 * 22 21 20 24 24 C 1.38806 * 120.00056 * 180.02562 * 22 21 20 25 25 N 1.31623 * 119.99640 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00053 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47361 * 89.99587 * 26 24 22 28 28 H 1.48497 * 109.47059 * 210.00081 * 26 24 22 29 29 H 1.48507 * 109.47001 * 329.99878 * 26 24 22 30 30 H 1.09000 * 109.47329 * 296.10081 * 1 2 3 31 31 H 1.09003 * 109.47011 * 56.09703 * 1 2 3 32 32 H 1.08996 * 109.47531 * 176.09344 * 1 2 3 33 33 H 1.09000 * 110.36719 * 86.07776 * 4 2 1 34 34 H 1.09000 * 110.36766 * 323.75543 * 4 2 1 35 35 H 1.07999 * 126.83498 * 0.02562 * 9 8 6 36 36 H 1.07997 * 125.57227 * 180.16415 * 10 9 8 37 37 H 1.08003 * 125.80622 * 179.97438 * 13 11 10 38 38 H 1.08994 * 109.87601 * 239.52514 * 14 5 4 39 39 H 1.08991 * 110.01202 * 118.42696 * 14 5 4 40 40 H 0.96995 * 120.00423 * 266.44941 * 17 15 14 41 41 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 42 42 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 43 43 H 0.97010 * 119.99946 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2004 5 7 3.4271 -1.2431 -0.7735 6 6 4.4480 -1.5603 -1.5941 7 8 4.3009 -1.4980 -2.7999 8 6 5.7416 -1.9824 -1.0310 9 6 6.0871 -2.1043 0.3894 10 6 7.3653 -2.5203 0.4334 11 7 7.8297 -2.6538 -0.8427 12 1 8.7264 -2.9380 -1.0793 13 6 6.8654 -2.3341 -1.7266 14 6 3.4674 -1.2742 0.6960 15 6 2.0861 -0.8080 1.2022 16 1 2.1920 -0.1726 2.0815 17 7 1.2267 -1.9575 1.4960 18 6 1.2806 -2.5469 2.7069 19 8 2.0407 -2.1261 3.5530 20 6 0.3970 -3.7298 3.0090 21 16 0.7002 -4.2923 4.7025 22 6 -0.4298 -5.6418 4.7835 23 1 -1.0413 -5.8862 3.9275 24 6 -0.5350 -6.3900 5.9479 25 7 0.2099 -6.0917 6.9913 26 14 -1.7335 -7.8202 6.0341 27 1 -1.0530 -9.0637 5.5914 28 1 -2.2070 -7.9857 7.4317 29 1 -2.8933 -7.5482 5.1474 30 1 -0.3634 0.4521 0.9229 31 1 -0.3633 0.5732 -0.8530 32 1 -0.3634 -1.0252 -0.0700 33 1 2.1559 -0.1719 -2.0837 34 1 1.4518 -1.6703 -1.4025 35 1 5.4425 -1.9025 1.2322 36 1 7.9325 -2.7135 1.3318 37 1 6.9630 -2.3521 -2.8021 38 1 4.2425 -0.5998 1.0598 39 1 3.6661 -2.2884 1.0422 40 1 0.6190 -2.2943 0.8193 41 1 -0.6482 -3.4387 2.9041 42 1 0.6209 -4.5379 2.3126 43 1 0.1367 -6.6149 7.8050 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072261911.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:33 Heat of formation + Delta-G solvation = -14.702349 kcal Electronic energy + Delta-G solvation = -26380.434602 eV Core-core repulsion = 22552.951625 eV Total energy + Delta-G solvation = -3827.482978 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.38590 -40.33360 -38.86933 -37.44875 -34.08641 -32.66499 -32.43453 -31.08740 -30.01604 -29.35115 -28.07268 -26.85417 -25.49027 -23.81380 -22.05262 -20.91630 -20.83763 -20.08427 -19.28735 -18.33083 -17.89758 -16.76681 -16.50063 -16.05925 -15.48776 -15.42700 -14.91394 -14.80841 -14.56615 -14.20360 -14.08816 -13.98497 -13.69171 -13.36201 -13.26034 -13.12456 -12.73258 -12.60076 -12.50104 -12.35643 -12.16549 -11.93613 -11.49492 -11.16340 -11.06883 -11.03121 -10.92587 -10.75789 -10.03359 -9.82331 -9.45452 -9.08422 -9.06936 -8.99601 -8.79156 -8.49344 -8.25184 -6.50819 -6.22726 -3.92992 1.59964 2.25870 2.78168 2.98868 3.03059 3.13470 3.21958 3.27440 3.31271 3.45985 3.69021 4.07106 4.19765 4.37784 4.60272 4.71608 4.82949 4.97984 5.00333 5.08523 5.12724 5.18494 5.20261 5.25218 5.36362 5.47701 5.55506 5.57436 5.66320 5.67033 5.79172 5.80207 5.86187 5.88841 5.99180 6.13331 6.19537 6.50474 6.58894 6.70247 7.17984 7.44710 7.58894 7.65149 8.19157 8.34399 8.56020 9.22955 10.84642 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012690 B = 0.002718 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.894510 B =10297.458454 C =11597.751957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 H 0.098 0.902 4 C 0.110 3.890 5 N -0.612 5.612 6 C 0.608 3.392 7 O -0.558 6.558 8 C -0.234 4.234 9 C -0.175 4.175 10 C -0.018 4.018 11 N -0.554 5.554 12 H 0.417 0.583 13 C 0.074 3.926 14 C 0.088 3.912 15 C 0.138 3.862 16 H 0.110 0.890 17 N -0.728 5.728 18 C 0.535 3.465 19 O -0.515 6.515 20 C -0.154 4.154 21 S -0.058 6.058 22 C -0.536 4.536 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.918 3.082 27 H -0.277 1.277 28 H -0.282 1.282 29 H -0.272 1.272 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.157 0.843 36 H 0.171 0.829 37 H 0.176 0.824 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.146 11.636 -17.252 23.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 H 0.117 0.883 4 C -0.012 4.012 5 N -0.345 5.345 6 C 0.400 3.600 7 O -0.439 6.439 8 C -0.244 4.244 9 C -0.199 4.199 10 C -0.145 4.145 11 N -0.148 5.148 12 H 0.254 0.746 13 C -0.063 4.063 14 C -0.036 4.036 15 C 0.032 3.968 16 H 0.128 0.872 17 N -0.384 5.384 18 C 0.321 3.679 19 O -0.389 6.389 20 C -0.305 4.305 21 S 0.168 5.832 22 C -0.684 4.684 23 H 0.091 0.909 24 C -0.136 4.136 25 N -0.503 5.503 26 Si 0.744 3.256 27 H -0.203 1.203 28 H -0.208 1.208 29 H -0.197 1.197 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.174 0.826 36 H 0.188 0.812 37 H 0.193 0.807 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.234 0.766 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.574 12.262 -16.311 23.460 hybrid contribution -1.476 -1.823 -1.216 2.642 sum 10.098 10.438 -17.527 22.763 Atomic orbital electron populations 1.21656 0.93012 1.02435 1.02726 1.22677 0.97064 0.99668 0.93696 0.88338 1.22301 0.83074 0.98257 0.97572 1.48161 1.11983 1.67441 1.06929 1.17024 0.82094 0.75984 0.84861 1.90759 1.83437 1.55436 1.14226 1.20257 0.94477 1.15924 0.93726 1.22686 0.95821 1.05792 0.95600 1.21911 0.96709 1.08667 0.87218 1.41677 1.13550 1.53305 1.06280 0.74633 1.21781 0.87820 1.00990 0.95700 1.22895 0.98132 1.02784 0.79795 1.21901 0.88721 0.87952 0.98249 0.87207 1.46072 1.43628 1.33058 1.15626 1.20322 0.82922 0.83656 0.80984 1.90701 1.38715 1.63516 1.45993 1.23540 1.01502 0.97867 1.07596 1.85358 1.54877 1.38396 1.04545 1.22869 1.26186 1.16991 1.02334 0.90948 1.24984 0.96245 0.97654 0.94669 1.70014 1.38031 1.39144 1.03102 0.86176 0.80454 0.81358 0.77569 1.20282 1.20760 1.19690 0.91421 0.91919 0.92160 0.90115 0.91380 0.82592 0.81193 0.80691 0.90028 0.89974 0.76574 0.89199 0.89256 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.85 37.15 0.33 -0.66 16 2 C -0.11 -0.90 3.51 -88.47 -0.31 -1.21 16 3 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.11 1.08 6.35 -2.53 -0.02 1.07 16 5 N -0.61 -7.22 3.33 -171.84 -0.57 -7.79 16 6 C 0.61 8.43 7.84 -12.60 -0.10 8.33 16 7 O -0.56 -9.21 17.17 5.25 0.09 -9.12 16 8 C -0.23 -2.82 6.23 -103.35 -0.64 -3.46 16 9 C -0.18 -1.90 9.39 -37.50 -0.35 -2.25 16 10 C -0.02 -0.15 11.89 -16.82 -0.20 -0.35 16 11 N -0.55 -3.90 5.90 -12.84 -0.08 -3.98 16 12 H 0.42 1.43 8.96 -40.82 -0.37 1.06 16 13 C 0.07 0.70 11.69 -16.84 -0.20 0.51 16 14 C 0.09 0.98 4.73 -3.06 -0.01 0.96 16 15 C 0.14 1.46 3.01 -66.10 -0.20 1.26 16 16 H 0.11 1.25 7.69 -51.93 -0.40 0.85 16 17 N -0.73 -8.88 4.57 -52.03 -0.24 -9.12 16 18 C 0.53 9.22 7.84 -10.98 -0.09 9.13 16 19 O -0.52 -10.72 15.59 5.56 0.09 -10.63 16 20 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 21 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 22 C -0.54 -15.04 9.50 30.94 0.29 -14.75 16 23 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 24 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 25 N -0.87 -25.84 13.22 55.49 0.73 -25.10 16 26 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.42 6.38 -51.93 -0.33 0.09 16 33 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 34 H 0.07 0.65 7.98 -51.93 -0.41 0.24 16 35 H 0.16 1.68 4.79 -52.49 -0.25 1.42 16 36 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.18 1.36 8.06 -52.48 -0.42 0.94 16 38 H 0.08 0.83 6.82 -51.93 -0.35 0.48 16 39 H 0.08 1.07 6.92 -51.93 -0.36 0.71 16 40 H 0.40 4.03 6.90 -40.82 -0.28 3.75 16 41 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 42 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 371.14 15.07 5.59 5.59 Total: -1.00 -37.01 371.14 -8.67 -45.68 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.68 Total: 4.21 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -1.37 Total: -2.20 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: -0.15 Total: -45.99 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.18 Total: -19.75 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.01 -8.67 -45.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072261911.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.978 kcal (2) G-P(sol) polarization free energy of solvation -37.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds