Wall clock time and date at job start Tue Mar 31 2020 20:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.47389 * 2 1 4 4 C 1.53003 * 109.47305 * 119.99874 * 2 1 3 5 5 C 1.52996 * 109.47190 * 184.99773 * 4 2 1 6 6 N 1.46501 * 109.46867 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99775 * 180.02562 * 6 5 4 8 8 O 1.21506 * 120.00220 * 0.02562 * 7 6 5 9 9 C 1.48175 * 119.99946 * 180.02562 * 7 6 5 10 10 C 1.39302 * 119.72217 * 179.97438 * 9 7 6 11 11 C 1.38596 * 119.05879 * 179.97438 * 10 9 7 12 12 C 1.38630 * 118.48552 * 0.02562 * 11 10 9 13 13 C 1.38558 * 119.35539 * 0.25409 * 12 11 10 14 14 N 1.31532 * 120.90059 * 359.49177 * 13 12 11 15 15 N 1.46502 * 109.47251 * 239.99847 * 2 1 3 16 16 C 1.34776 * 119.99987 * 84.99890 * 15 2 1 17 17 O 1.21280 * 119.99996 * 0.02562 * 16 15 2 18 18 C 1.50702 * 119.99812 * 180.02562 * 16 15 2 19 19 S 1.81000 * 109.46903 * 180.02562 * 18 16 15 20 20 C 1.76200 * 100.00067 * 180.02562 * 19 18 16 21 21 H 1.07995 * 119.99798 * 359.97438 * 20 19 18 22 22 C 1.38795 * 120.00129 * 180.02562 * 20 19 18 23 23 N 1.31635 * 119.99953 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00168 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46821 * 89.99635 * 24 22 20 26 26 H 1.48495 * 109.47537 * 209.99681 * 24 22 20 27 27 H 1.48503 * 109.46970 * 330.00050 * 24 22 20 28 28 H 1.09007 * 109.47500 * 300.00495 * 1 2 3 29 29 H 1.09000 * 109.47142 * 59.99860 * 1 2 3 30 30 H 1.08998 * 109.47583 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46803 * 64.99906 * 4 2 1 32 32 H 1.09004 * 109.46933 * 304.99885 * 4 2 1 33 33 H 1.08997 * 109.47139 * 60.00339 * 5 4 2 34 34 H 1.08996 * 109.47421 * 300.00183 * 5 4 2 35 35 H 0.97001 * 120.00408 * 0.02562 * 6 5 4 36 36 H 1.07999 * 120.47505 * 0.02670 * 10 9 7 37 37 H 1.07999 * 120.75338 * 180.02562 * 11 10 9 38 38 H 1.08002 * 120.31909 * 179.97438 * 12 11 10 39 39 H 1.07995 * 119.54967 * 179.74631 * 13 12 11 40 40 H 0.96997 * 120.00002 * 265.00515 * 15 2 1 41 41 H 1.08993 * 109.46876 * 299.99673 * 18 16 15 42 42 H 1.08993 * 109.47169 * 60.00052 * 18 16 15 43 43 H 0.97001 * 119.99817 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3136 6 7 4.0530 -1.3034 2.5102 7 6 5.3739 -1.3386 2.7759 8 8 6.1597 -0.7977 2.0234 9 6 5.8678 -2.0371 3.9858 10 6 7.2343 -2.0704 4.2545 11 6 7.6811 -2.7271 5.3903 12 6 6.7453 -3.3282 6.2178 13 6 5.4018 -3.2605 5.8855 14 7 5.0046 -2.6264 4.8037 15 7 2.0183 -0.6906 -1.1962 16 6 2.1470 -0.0183 -2.3571 17 8 1.8590 1.1585 -2.4115 18 6 2.6488 -0.7289 -3.5877 19 16 2.7106 0.4343 -4.9731 20 6 3.3122 -0.6313 -6.2408 21 1 3.5209 -1.6679 -6.0209 22 6 3.5189 -0.1384 -7.5217 23 7 3.2650 1.1252 -7.7895 24 14 4.1574 -1.2679 -8.8655 25 1 3.0113 -1.9040 -9.5634 26 1 4.9534 -0.4783 -9.8391 27 1 5.0150 -2.3195 -8.2621 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.7516 -1.7714 1.2056 32 1 1.6054 -0.2616 2.1370 33 1 3.8531 0.4369 1.3573 34 1 3.9994 -1.0728 0.4260 35 1 3.4257 -1.7349 3.1112 36 1 7.9355 -1.5907 3.5878 37 1 8.7344 -2.7694 5.6253 38 1 7.0607 -3.8482 7.1103 39 1 4.6705 -3.7312 6.5257 40 1 2.2489 -1.6318 -1.1526 41 1 3.6479 -1.1214 -3.3985 42 1 1.9760 -1.5507 -3.8325 43 1 3.4092 1.4696 -8.6848 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075368207.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:56 Heat of formation + Delta-G solvation = -47.115312 kcal Electronic energy + Delta-G solvation = -24963.208573 eV Core-core repulsion = 21134.320063 eV Total energy + Delta-G solvation = -3828.888509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.00359 -39.58754 -39.11735 -36.61784 -34.73247 -33.13070 -32.39684 -32.06065 -31.63991 -29.35662 -28.43276 -25.47217 -25.38199 -24.04590 -23.26471 -21.57454 -20.96882 -20.30085 -18.59531 -17.78614 -17.21179 -16.58730 -16.50081 -16.14472 -15.80783 -15.57358 -15.35078 -14.86665 -14.77620 -14.60010 -14.22300 -14.03885 -13.70335 -13.64607 -13.46314 -13.19373 -12.86862 -12.61725 -12.48645 -12.11678 -11.91198 -11.73553 -11.51862 -11.07139 -11.03605 -10.98795 -10.73292 -10.65310 -10.51124 -10.01930 -9.78242 -9.75166 -9.35298 -9.33820 -9.03953 -8.87951 -8.19905 -6.46079 -6.18506 -3.88607 0.16096 0.67948 2.38336 2.72284 3.06684 3.13634 3.24752 3.30303 3.34890 3.41690 3.66055 3.74849 4.23578 4.27393 4.30886 4.45835 4.49113 4.53717 4.69379 4.77825 4.89828 5.16580 5.19037 5.19582 5.26225 5.34207 5.36156 5.46066 5.57431 5.58669 5.64062 5.70547 5.77644 5.93271 6.02477 6.03407 6.11076 6.18051 6.20476 6.68762 7.03083 7.32251 7.62828 7.73955 7.86457 8.38502 8.65553 9.26855 10.88916 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.014180 B = 0.001968 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.160264 B =14221.831404 C =15665.317580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.092 0.908 4 C -0.137 4.137 5 C 0.115 3.885 6 N -0.710 5.710 7 C 0.567 3.433 8 O -0.526 6.526 9 C 0.079 3.921 10 C -0.111 4.111 11 C -0.081 4.081 12 C -0.152 4.152 13 C 0.097 3.903 14 N -0.461 5.461 15 N -0.736 5.736 16 C 0.534 3.466 17 O -0.517 6.517 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.410 0.590 36 H 0.150 0.850 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.164 0.836 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.290 -11.228 31.719 33.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.175 4.175 5 C -0.009 4.009 6 N -0.362 5.362 7 C 0.351 3.649 8 O -0.401 6.401 9 C -0.059 4.059 10 C -0.132 4.132 11 C -0.107 4.107 12 C -0.172 4.172 13 C -0.062 4.062 14 N -0.173 5.173 15 N -0.391 5.391 16 C 0.320 3.680 17 O -0.391 6.391 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.246 0.754 36 H 0.168 0.832 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.181 0.819 40 H 0.231 0.769 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.472 -8.630 30.687 31.912 hybrid contribution 1.460 -2.901 -0.186 3.253 sum 2.932 -11.531 30.501 32.740 Atomic orbital electron populations 1.22169 0.94986 1.02114 1.02826 1.20779 0.94183 0.97744 0.83178 0.89027 1.22106 0.94372 1.02204 0.98867 1.21500 0.93850 0.98122 0.87388 1.45831 1.07265 1.56117 1.26983 1.17892 0.82801 0.79980 0.84202 1.90845 1.55573 1.45305 1.48407 1.21186 0.90998 0.98364 0.95330 1.22199 0.96020 0.97474 0.97485 1.21687 1.00897 0.94818 0.93285 1.22416 0.94529 0.99513 1.00693 1.22817 0.94821 0.95351 0.93258 1.67544 1.38837 1.07001 1.03891 1.46134 1.69482 1.13880 1.09580 1.20291 0.76718 0.87217 0.83760 1.90698 1.48247 1.15726 1.84394 1.23539 1.03689 1.04844 0.98430 1.85380 1.86323 1.12890 0.98732 1.22871 1.50948 0.98126 0.96373 0.90953 1.24991 0.95132 0.95532 0.97962 1.70022 1.45653 1.13164 1.21456 0.86170 0.78813 0.79975 0.80556 1.20301 1.20762 1.19704 0.91857 0.91432 0.92522 0.90510 0.89623 0.90787 0.90596 0.75408 0.83232 0.83901 0.84113 0.81926 0.76917 0.89236 0.89281 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.48 37.15 0.35 -1.31 16 2 C 0.15 1.60 2.57 -67.93 -0.17 1.42 16 3 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 4 C -0.14 -1.03 4.87 -26.73 -0.13 -1.16 16 5 C 0.11 1.13 5.56 -4.04 -0.02 1.11 16 6 N -0.71 -6.62 5.55 -61.15 -0.34 -6.96 16 7 C 0.57 6.62 7.81 -12.18 -0.10 6.52 16 8 O -0.53 -8.01 16.32 5.36 0.09 -7.93 16 9 C 0.08 0.76 6.75 -83.01 -0.56 0.20 16 10 C -0.11 -0.90 9.63 -39.05 -0.38 -1.27 16 11 C -0.08 -0.43 10.17 -39.30 -0.40 -0.83 16 12 C -0.15 -0.65 10.11 -39.32 -0.40 -1.04 16 13 C 0.10 0.53 11.18 -17.56 -0.20 0.33 16 14 N -0.46 -3.74 9.54 -9.80 -0.09 -3.83 16 15 N -0.74 -9.52 4.53 -53.80 -0.24 -9.76 16 16 C 0.53 9.92 7.81 -10.98 -0.09 9.83 16 17 O -0.52 -11.66 15.52 5.56 0.09 -11.58 16 18 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 20 C -0.53 -15.47 9.50 30.94 0.29 -15.18 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.49 13.22 55.49 0.73 -25.75 16 24 Si 0.92 21.74 29.55 -169.99 -5.02 16.72 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.87 7.75 -51.93 -0.40 0.47 16 35 H 0.41 2.99 7.80 -40.82 -0.32 2.68 16 36 H 0.15 1.21 7.64 -52.49 -0.40 0.81 16 37 H 0.14 0.38 8.06 -52.49 -0.42 -0.05 16 38 H 0.14 0.19 8.06 -52.49 -0.42 -0.23 16 39 H 0.16 0.40 8.06 -52.49 -0.42 -0.03 16 40 H 0.40 4.08 8.60 -40.82 -0.35 3.73 16 41 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 42 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 43 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 388.04 15.07 5.85 5.85 Total: -1.00 -37.80 388.04 -8.88 -46.69 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.06 Total: 2.71 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -1.67 Total: -2.29 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.06 Total: -46.31 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: 0.17 Total: -19.50 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.80 -8.88 -46.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075368207.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.427 kcal (2) G-P(sol) polarization free energy of solvation -37.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds