Wall clock time and date at job start Tue Mar 31 2020 20:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47820 * 2 1 4 4 C 1.53003 * 109.46949 * 120.00220 * 2 1 3 5 5 C 1.52996 * 109.47301 * 184.99469 * 4 2 1 6 6 N 1.46498 * 109.47059 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 4 8 8 O 1.21553 * 119.99924 * 0.28083 * 7 6 5 9 9 C 1.47842 * 120.00010 * 180.27787 * 7 6 5 10 10 C 1.40028 * 120.56011 * 179.72522 * 9 7 6 11 11 C 1.38350 * 118.28790 * 179.73266 * 10 9 7 12 12 C 1.38352 * 119.30610 * 0.54074 * 11 10 9 13 13 N 1.31932 * 121.07479 * 359.72403 * 12 11 10 14 14 C 1.31693 * 121.88310 * 359.97438 * 13 12 11 15 15 N 1.46503 * 109.46962 * 239.99625 * 2 1 3 16 16 C 1.34775 * 119.99699 * 85.00331 * 15 2 1 17 17 O 1.21281 * 120.00101 * 0.02562 * 16 15 2 18 18 C 1.50703 * 120.00148 * 180.02562 * 16 15 2 19 19 S 1.80996 * 109.47281 * 180.02562 * 18 16 15 20 20 C 1.76197 * 100.00008 * 179.97438 * 19 18 16 21 21 H 1.07994 * 119.99971 * 359.97438 * 20 19 18 22 22 C 1.38805 * 120.00103 * 179.97438 * 20 19 18 23 23 N 1.31625 * 119.99801 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00012 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47265 * 90.00285 * 24 22 20 26 26 H 1.48503 * 109.46932 * 210.00272 * 24 22 20 27 27 H 1.48503 * 109.47041 * 330.00017 * 24 22 20 28 28 H 1.09008 * 109.46576 * 59.99240 * 1 2 3 29 29 H 1.08992 * 109.47820 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46585 * 300.00438 * 1 2 3 31 31 H 1.09004 * 109.47038 * 64.99479 * 4 2 1 32 32 H 1.09000 * 109.46939 * 305.00131 * 4 2 1 33 33 H 1.09004 * 109.47066 * 60.00027 * 5 4 2 34 34 H 1.08994 * 109.46974 * 300.00175 * 5 4 2 35 35 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 36 36 H 1.08007 * 120.85122 * 359.97438 * 10 9 7 37 37 H 1.08006 * 120.34961 * 180.23812 * 11 10 9 38 38 H 1.07994 * 119.46123 * 179.73719 * 12 11 10 39 39 H 1.07999 * 119.71954 * 179.97438 * 14 13 12 40 40 H 0.97002 * 120.00479 * 265.00508 * 15 2 1 41 41 H 1.09008 * 109.46987 * 300.00114 * 18 16 15 42 42 H 1.08991 * 109.46864 * 59.99809 * 18 16 15 43 43 H 0.97002 * 120.00098 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6135 1.3137 6 7 4.0530 -1.3037 2.5102 7 6 5.3743 -1.3443 2.7727 8 8 6.1605 -0.8039 2.0195 9 6 5.8675 -2.0460 3.9769 10 6 7.2382 -2.1003 4.2580 11 6 7.6474 -2.7646 5.4005 12 6 6.6994 -3.3579 6.2151 13 7 5.4146 -3.2953 5.9221 14 6 4.9754 -2.6698 4.8496 15 7 2.0183 -0.6907 -1.1962 16 6 2.1471 -0.0184 -2.3571 17 8 1.8591 1.1585 -2.4115 18 6 2.6488 -0.7289 -3.5878 19 16 2.7106 0.4343 -4.9731 20 6 3.3136 -0.6309 -6.2404 21 1 3.5228 -1.6673 -6.0204 22 6 3.5197 -0.1381 -7.5215 23 7 3.2652 1.1252 -7.7895 24 14 4.1583 -1.2676 -8.8653 25 1 3.0123 -1.9042 -9.5628 26 1 4.9538 -0.4777 -9.8392 27 1 5.0165 -2.3187 -8.2620 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0275 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.7515 -1.7716 1.2056 32 1 1.6053 -0.2618 2.1370 33 1 3.8532 0.4367 1.3574 34 1 3.9993 -1.0730 0.4260 35 1 3.4256 -1.7352 3.1112 36 1 7.9571 -1.6323 3.6017 37 1 8.6962 -2.8235 5.6514 38 1 7.0164 -3.8807 7.1053 39 1 3.9157 -2.6405 4.6432 40 1 2.2490 -1.6319 -1.1526 41 1 3.6480 -1.1216 -3.3986 42 1 1.9759 -1.5506 -3.8325 43 1 3.4096 1.4698 -8.6847 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075403406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:00 Heat of formation + Delta-G solvation = -46.646012 kcal Electronic energy + Delta-G solvation = -24969.643899 eV Core-core repulsion = 21140.775741 eV Total energy + Delta-G solvation = -3828.868159 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.06061 -39.65932 -39.21149 -36.68805 -34.84283 -33.05470 -32.42296 -32.37919 -31.59829 -29.34688 -28.46678 -25.48247 -25.35053 -24.14878 -23.27574 -21.68342 -20.99614 -20.34607 -18.62532 -17.82548 -17.34671 -16.96628 -16.61673 -16.17103 -15.81747 -15.57579 -15.38218 -14.88301 -14.79238 -14.61093 -14.14124 -14.08218 -13.75151 -13.64613 -13.55834 -13.23416 -12.91802 -12.76228 -12.64066 -12.16689 -11.95258 -11.82430 -11.57946 -11.12634 -11.05202 -11.00761 -10.74913 -10.64635 -10.47498 -9.96245 -9.82086 -9.80182 -9.47503 -9.38497 -9.05844 -8.92625 -8.22190 -6.48253 -6.20299 -3.90566 0.10264 0.65240 2.42817 2.63123 3.03499 3.09898 3.23403 3.28862 3.33122 3.33621 3.70523 3.71415 4.16546 4.21831 4.24251 4.34945 4.39751 4.44788 4.64093 4.69860 4.83428 5.00605 5.14750 5.15352 5.19134 5.28639 5.31021 5.47365 5.51715 5.53374 5.58479 5.66338 5.71133 5.90241 5.93520 5.98383 6.00414 6.14597 6.16595 6.64120 6.99751 7.26972 7.61015 7.69448 7.75194 8.36652 8.61696 9.25083 10.87127 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.014177 B = 0.001964 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.589599 B =14255.340300 C =15697.779988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.092 0.908 4 C -0.138 4.138 5 C 0.116 3.884 6 N -0.725 5.725 7 C 0.560 3.440 8 O -0.526 6.526 9 C -0.186 4.186 10 C -0.016 4.016 11 C -0.178 4.178 12 C 0.120 3.880 13 N -0.488 5.488 14 C 0.133 3.867 15 N -0.736 5.736 16 C 0.534 3.466 17 O -0.516 6.516 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.399 0.601 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.162 0.838 39 H 0.158 0.842 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.780 -10.278 30.029 31.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.177 4.177 5 C -0.007 4.007 6 N -0.377 5.377 7 C 0.346 3.654 8 O -0.402 6.402 9 C -0.191 4.191 10 C -0.043 4.043 11 C -0.198 4.198 12 C -0.036 4.036 13 N -0.196 5.196 14 C -0.025 4.025 15 N -0.391 5.391 16 C 0.320 3.680 17 O -0.390 6.390 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.234 0.766 36 H 0.167 0.833 37 H 0.162 0.838 38 H 0.179 0.821 39 H 0.175 0.825 40 H 0.231 0.769 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.260 -8.143 29.793 30.912 hybrid contribution 1.147 -2.401 -1.052 2.861 sum 2.407 -10.544 28.741 30.708 Atomic orbital electron populations 1.22173 0.94953 1.02125 1.02870 1.20772 0.94207 0.97754 0.83154 0.89010 1.22121 0.94350 1.02198 0.98984 1.21485 0.93785 0.98169 0.87246 1.45905 1.07060 1.57244 1.27485 1.18051 0.82487 0.80052 0.84848 1.90847 1.55265 1.45255 1.48834 1.21038 0.95721 1.04149 0.98203 1.21816 0.94814 0.92537 0.95128 1.22225 1.01991 0.99781 0.95762 1.23052 0.88128 0.94150 0.98288 1.67714 1.17449 1.16700 1.17783 1.22971 0.99766 0.90866 0.88922 1.46134 1.69536 1.13868 1.09581 1.20297 0.76705 0.87218 0.83759 1.90700 1.48202 1.15724 1.84381 1.23540 1.03679 1.04861 0.98430 1.85382 1.86282 1.12892 0.98757 1.22868 1.50983 0.98146 0.96366 0.90951 1.24991 0.95115 0.95536 0.97963 1.70016 1.45598 1.13176 1.21483 0.86170 0.78819 0.79972 0.80551 1.20290 1.20751 1.19702 0.91399 0.92512 0.91852 0.90508 0.89617 0.90723 0.90533 0.76596 0.83302 0.83779 0.82056 0.82471 0.76922 0.89241 0.89275 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.48 37.16 0.35 -1.21 16 2 C 0.15 1.49 2.58 -67.93 -0.17 1.31 16 3 H 0.09 1.14 7.58 -51.93 -0.39 0.74 16 4 C -0.14 -0.87 4.87 -26.73 -0.13 -1.00 16 5 C 0.12 1.00 5.56 -4.04 -0.02 0.98 16 6 N -0.72 -5.24 5.51 -61.25 -0.34 -5.58 16 7 C 0.56 5.64 7.78 -12.33 -0.10 5.54 16 8 O -0.53 -7.60 16.42 5.32 0.09 -7.51 16 9 C -0.19 -1.49 5.89 -104.82 -0.62 -2.11 16 10 C -0.02 -0.12 9.72 -38.87 -0.38 -0.50 16 11 C -0.18 -0.93 10.10 -39.50 -0.40 -1.33 16 12 C 0.12 0.67 11.17 -17.47 -0.20 0.47 16 13 N -0.49 -3.62 10.35 -12.91 -0.13 -3.76 16 14 C 0.13 0.88 10.71 -17.13 -0.18 0.69 16 15 N -0.74 -9.08 4.53 -53.80 -0.24 -9.32 16 16 C 0.53 9.68 7.81 -10.98 -0.09 9.60 16 17 O -0.52 -11.45 15.52 5.56 0.09 -11.36 16 18 C -0.15 -3.11 6.16 36.01 0.22 -2.88 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 20 C -0.54 -15.37 9.50 30.94 0.29 -15.08 16 21 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 24 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.80 7.75 -51.93 -0.40 0.40 16 35 H 0.40 1.56 6.54 -40.82 -0.27 1.29 16 36 H 0.15 1.11 7.74 -52.48 -0.41 0.70 16 37 H 0.14 0.37 8.06 -52.48 -0.42 -0.05 16 38 H 0.16 0.43 8.06 -52.49 -0.42 0.01 16 39 H 0.16 0.56 6.42 -52.49 -0.34 0.22 16 40 H 0.40 3.82 8.60 -40.82 -0.35 3.46 16 41 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 42 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 385.81 15.07 5.81 5.81 Total: -1.00 -38.47 385.81 -8.67 -47.14 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.93 Total: 0.94 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -1.51 Total: -3.50 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.02 Total: -44.25 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: 0.17 Total: -18.88 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.47 -8.67 -47.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075403406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.491 kcal (2) G-P(sol) polarization free energy of solvation -38.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds