Wall clock time and date at job start Tue Mar 31 2020 20:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47820 * 2 1 4 4 C 1.53003 * 109.46949 * 120.00220 * 2 1 3 5 5 C 1.52996 * 109.47301 * 184.99469 * 4 2 1 6 6 N 1.46498 * 109.47059 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 4 8 8 O 1.21553 * 119.99924 * 0.28083 * 7 6 5 9 9 C 1.47842 * 120.00010 * 180.27787 * 7 6 5 10 10 C 1.40028 * 120.56011 * 179.72522 * 9 7 6 11 11 C 1.38350 * 118.28790 * 179.73266 * 10 9 7 12 12 C 1.38352 * 119.30610 * 0.54074 * 11 10 9 13 13 N 1.31932 * 121.07479 * 359.72403 * 12 11 10 14 14 C 1.31693 * 121.88310 * 359.97438 * 13 12 11 15 15 N 1.46503 * 109.46962 * 239.99625 * 2 1 3 16 16 C 1.34775 * 119.99699 * 85.00331 * 15 2 1 17 17 O 1.21281 * 120.00101 * 0.02562 * 16 15 2 18 18 C 1.50703 * 120.00148 * 180.02562 * 16 15 2 19 19 S 1.80996 * 109.47281 * 180.02562 * 18 16 15 20 20 C 1.76197 * 100.00008 * 179.97438 * 19 18 16 21 21 H 1.07994 * 119.99971 * 359.97438 * 20 19 18 22 22 C 1.38805 * 120.00103 * 179.97438 * 20 19 18 23 23 N 1.31625 * 119.99801 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00012 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47265 * 90.00285 * 24 22 20 26 26 H 1.48503 * 109.46932 * 210.00272 * 24 22 20 27 27 H 1.48503 * 109.47041 * 330.00017 * 24 22 20 28 28 H 1.09008 * 109.46576 * 59.99240 * 1 2 3 29 29 H 1.08992 * 109.47820 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46585 * 300.00438 * 1 2 3 31 31 H 1.09004 * 109.47038 * 64.99479 * 4 2 1 32 32 H 1.09000 * 109.46939 * 305.00131 * 4 2 1 33 33 H 1.09004 * 109.47066 * 60.00027 * 5 4 2 34 34 H 1.08994 * 109.46974 * 300.00175 * 5 4 2 35 35 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 36 36 H 1.08007 * 120.85122 * 359.97438 * 10 9 7 37 37 H 1.08006 * 120.34961 * 180.23812 * 11 10 9 38 38 H 1.07994 * 119.46123 * 179.73719 * 12 11 10 39 39 H 1.07999 * 119.71954 * 179.97438 * 14 13 12 40 40 H 0.97002 * 120.00479 * 265.00508 * 15 2 1 41 41 H 1.09008 * 109.46987 * 300.00114 * 18 16 15 42 42 H 1.08991 * 109.46864 * 59.99809 * 18 16 15 43 43 H 0.97002 * 120.00098 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6135 1.3137 6 7 4.0530 -1.3037 2.5102 7 6 5.3743 -1.3443 2.7727 8 8 6.1605 -0.8039 2.0195 9 6 5.8675 -2.0460 3.9769 10 6 7.2382 -2.1003 4.2580 11 6 7.6474 -2.7646 5.4005 12 6 6.6994 -3.3579 6.2151 13 7 5.4146 -3.2953 5.9221 14 6 4.9754 -2.6698 4.8496 15 7 2.0183 -0.6907 -1.1962 16 6 2.1471 -0.0184 -2.3571 17 8 1.8591 1.1585 -2.4115 18 6 2.6488 -0.7289 -3.5878 19 16 2.7106 0.4343 -4.9731 20 6 3.3136 -0.6309 -6.2404 21 1 3.5228 -1.6673 -6.0204 22 6 3.5197 -0.1381 -7.5215 23 7 3.2652 1.1252 -7.7895 24 14 4.1583 -1.2676 -8.8653 25 1 3.0123 -1.9042 -9.5628 26 1 4.9538 -0.4777 -9.8392 27 1 5.0165 -2.3187 -8.2620 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0275 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.7515 -1.7716 1.2056 32 1 1.6053 -0.2618 2.1370 33 1 3.8532 0.4367 1.3574 34 1 3.9993 -1.0730 0.4260 35 1 3.4256 -1.7352 3.1112 36 1 7.9571 -1.6323 3.6017 37 1 8.6962 -2.8235 5.6514 38 1 7.0164 -3.8807 7.1053 39 1 3.9157 -2.6405 4.6432 40 1 2.2490 -1.6319 -1.1526 41 1 3.6480 -1.1216 -3.3986 42 1 1.9759 -1.5506 -3.8325 43 1 3.4096 1.4698 -8.6847 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075403406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:00 Heat of formation + Delta-G solvation = -76.141838 kcal Electronic energy + Delta-G solvation = -24970.922934 eV Core-core repulsion = 21140.775741 eV Total energy + Delta-G solvation = -3830.147194 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.64988 -40.81321 -40.04475 -37.69662 -35.76732 -34.59648 -33.59715 -33.23058 -32.45290 -30.36127 -29.62142 -27.66848 -25.96440 -24.65101 -23.96191 -22.57118 -21.84824 -21.50519 -19.86243 -19.18933 -17.96486 -17.90834 -17.48728 -17.27426 -16.89020 -16.63402 -16.44728 -16.31779 -15.93621 -15.86136 -15.15658 -14.81992 -14.76104 -14.61670 -14.39669 -14.33982 -14.14014 -13.95719 -13.31377 -13.20431 -13.17709 -13.01367 -12.89898 -12.61226 -12.46719 -12.41726 -11.92669 -11.73213 -11.40530 -11.15276 -11.00915 -10.90767 -10.51663 -10.40058 -10.28665 -10.15789 -10.05012 -8.67397 -8.35694 -6.13620 -0.41703 0.17788 1.26460 1.41259 1.46214 1.56963 1.63693 1.74750 1.96734 2.25583 2.32156 2.82178 2.98249 3.29025 3.31684 3.63092 3.73473 3.78922 3.84059 3.93397 4.00887 4.03973 4.09408 4.28581 4.41033 4.43576 4.48645 4.50321 4.62145 4.66740 4.83258 4.89223 4.97913 5.01232 5.10744 5.14993 5.28579 5.35361 5.40573 5.55529 5.57141 6.18668 6.39057 6.52998 6.81509 7.05454 7.07704 7.28019 8.73545 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.014177 B = 0.001964 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.589599 B =14255.340300 C =15697.779988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.142 3.858 3 H 0.064 0.936 4 C -0.119 4.119 5 C 0.117 3.883 6 N -0.705 5.705 7 C 0.557 3.443 8 O -0.582 6.582 9 C -0.203 4.203 10 C -0.035 4.035 11 C -0.172 4.172 12 C 0.121 3.879 13 N -0.508 5.508 14 C 0.138 3.862 15 N -0.710 5.710 16 C 0.535 3.465 17 O -0.565 6.565 18 C -0.132 4.132 19 S -0.151 6.151 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.266 1.266 26 H -0.278 1.278 27 H -0.259 1.259 28 H 0.029 0.971 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.418 0.582 36 H 0.139 0.861 37 H 0.172 0.828 38 H 0.192 0.808 39 H 0.186 0.814 40 H 0.415 0.585 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.397 -13.565 32.495 35.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.037 3.963 3 H 0.082 0.918 4 C -0.157 4.157 5 C -0.007 4.007 6 N -0.357 5.357 7 C 0.345 3.655 8 O -0.462 6.462 9 C -0.208 4.208 10 C -0.061 4.061 11 C -0.191 4.191 12 C -0.035 4.035 13 N -0.217 5.217 14 C -0.020 4.020 15 N -0.364 5.364 16 C 0.321 3.679 17 O -0.443 6.443 18 C -0.283 4.283 19 S 0.076 5.924 20 C -0.695 4.695 21 H 0.100 0.900 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.821 3.179 25 H -0.191 1.191 26 H -0.203 1.203 27 H -0.183 1.183 28 H 0.048 0.952 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.126 0.874 32 H 0.134 0.866 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.257 0.743 36 H 0.156 0.844 37 H 0.189 0.811 38 H 0.209 0.791 39 H 0.203 0.797 40 H 0.252 0.748 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.832 -11.496 32.336 34.329 hybrid contribution 1.269 -1.414 -1.624 2.500 sum 2.101 -12.910 30.711 33.381 Atomic orbital electron populations 1.22121 0.93832 1.03278 1.02305 1.20988 0.95009 0.96850 0.83474 0.91751 1.22023 0.92100 1.03803 0.97756 1.21372 0.95490 0.96760 0.87073 1.45697 1.06609 1.56305 1.27123 1.18449 0.82831 0.79361 0.84905 1.90817 1.56751 1.47843 1.50818 1.20949 0.96366 1.05433 0.98072 1.21957 0.94765 0.93303 0.96090 1.22497 1.03483 0.98580 0.94548 1.23616 0.87626 0.93333 0.98912 1.67804 1.18458 1.17342 1.18102 1.23326 1.00780 0.89760 0.88133 1.45914 1.67521 1.14520 1.08482 1.19997 0.76641 0.86569 0.84733 1.90688 1.50700 1.17714 1.85194 1.23392 1.05298 1.03276 0.96315 1.85552 1.86665 1.17408 1.02813 1.23204 1.51000 0.98433 0.96861 0.90012 1.26140 0.95083 0.97235 1.00772 1.70183 1.46843 1.15435 1.22250 0.84949 0.78455 0.77727 0.76817 1.19127 1.20280 1.18326 0.95168 0.90413 0.89286 0.87407 0.86569 0.93078 0.92537 0.74258 0.84362 0.81094 0.79081 0.79742 0.74840 0.87764 0.87156 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.48 71.98 0.68 -2.00 16 2 C 0.14 2.66 2.58 44.99 0.12 2.78 16 3 H 0.06 1.62 7.58 -2.39 -0.02 1.60 16 4 C -0.12 -1.11 4.87 30.59 0.15 -0.96 16 5 C 0.12 1.89 5.56 86.38 0.48 2.37 16 6 N -0.70 -9.02 5.51 -465.99 -2.57 -11.59 16 7 C 0.56 11.19 7.78 86.79 0.68 11.86 16 8 O -0.58 -17.72 16.42 -3.88 -0.06 -17.78 16 9 C -0.20 -3.11 5.89 -19.99 -0.12 -3.23 16 10 C -0.03 -0.50 9.72 22.73 0.22 -0.28 16 11 C -0.17 -1.49 10.10 22.32 0.23 -1.26 16 12 C 0.12 1.03 11.17 84.71 0.95 1.98 16 13 N -0.51 -6.28 10.35 -194.76 -2.01 -8.29 16 14 C 0.14 1.51 10.71 85.02 0.91 2.42 16 15 N -0.71 -16.67 4.53 -442.53 -2.00 -18.67 16 16 C 0.53 19.63 7.81 87.66 0.68 20.32 16 17 O -0.56 -26.21 15.52 -3.03 -0.05 -26.25 16 18 C -0.13 -5.30 6.16 71.24 0.44 -4.86 16 19 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 20 C -0.55 -31.83 9.50 67.96 0.65 -31.18 16 21 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 22 C 0.01 0.72 5.49 84.86 0.47 1.19 16 23 N -0.91 -56.76 13.22 21.65 0.29 -56.48 16 24 Si 1.00 44.33 29.55 68.60 2.03 46.36 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 27 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 28 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.06 1.16 7.75 -2.39 -0.02 1.14 16 35 H 0.42 1.89 6.54 -92.71 -0.61 1.28 16 36 H 0.14 2.22 7.74 -2.91 -0.02 2.20 16 37 H 0.17 0.45 8.06 -2.91 -0.02 0.42 16 38 H 0.19 0.34 8.06 -2.91 -0.02 0.32 16 39 H 0.19 0.70 6.42 -2.91 -0.02 0.68 16 40 H 0.41 6.92 8.60 -92.71 -0.80 6.12 16 41 H 0.10 3.88 8.14 -2.39 -0.02 3.86 16 42 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 43 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -90.29 385.81 0.62 -89.67 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -0.36 Total: 13.65 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 6.52 Total: -0.86 kcal Atomic # 7 Polarization: -88.73 SS G_CDS: -6.30 Total: -95.03 kcal Atomic # 8 Polarization: -43.93 SS G_CDS: -0.11 Total: -44.04 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -90.29 0.62 -89.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075403406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.528 kcal (2) G-P(sol) polarization free energy of solvation -90.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds