Wall clock time and date at job start Tue Mar 31 2020 20:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47668 * 2 1 4 4 C 1.53000 * 109.47164 * 120.00021 * 2 1 3 5 5 C 1.53000 * 109.47622 * 184.99876 * 4 2 1 6 6 N 1.46499 * 109.47147 * 180.02562 * 5 4 2 7 7 C 1.34778 * 119.99831 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99923 * 359.97438 * 7 6 5 9 9 C 1.50695 * 120.00095 * 180.02562 * 7 6 5 10 10 S 1.81005 * 109.47186 * 179.97438 * 9 7 6 11 11 C 1.76198 * 99.99752 * 179.97438 * 10 9 7 12 12 H 1.07994 * 120.00509 * 0.02562 * 11 10 9 13 13 C 1.38807 * 119.99723 * 179.97438 * 11 10 9 14 14 N 1.31626 * 119.99857 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99849 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47383 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47191 * 120.00162 * 15 13 11 18 18 H 1.48501 * 109.46922 * 239.99900 * 15 13 11 19 19 N 1.46503 * 109.47064 * 239.99788 * 2 1 3 20 20 C 1.34776 * 119.99812 * 85.00771 * 19 2 1 21 21 O 1.21549 * 120.00191 * 359.97438 * 20 19 2 22 22 C 1.47847 * 119.99755 * 180.02562 * 20 19 2 23 23 C 1.40021 * 120.55378 * 179.97438 * 22 20 19 24 24 C 1.38361 * 118.28541 * 179.72193 * 23 22 20 25 25 C 1.38357 * 119.29991 * 0.25622 * 24 23 22 26 26 N 1.31920 * 121.08440 * 0.02562 * 25 24 23 27 27 C 1.31704 * 121.87701 * 359.97438 * 26 25 24 28 28 H 1.08996 * 109.47141 * 300.00363 * 1 2 3 29 29 H 1.09001 * 109.46472 * 60.00000 * 1 2 3 30 30 H 1.08997 * 109.47125 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47542 * 305.00279 * 4 2 1 32 32 H 1.09010 * 109.47277 * 64.99456 * 4 2 1 33 33 H 1.08999 * 109.47054 * 299.99992 * 5 4 2 34 34 H 1.08996 * 109.46842 * 59.99975 * 5 4 2 35 35 H 0.96992 * 120.00219 * 359.97438 * 6 5 4 36 36 H 1.09008 * 109.47049 * 299.99691 * 9 7 6 37 37 H 1.08997 * 109.47717 * 59.99374 * 9 7 6 38 38 H 0.97003 * 119.99885 * 180.02562 * 14 13 11 39 39 H 0.96997 * 120.00155 * 265.00111 * 19 2 1 40 40 H 1.08002 * 120.86196 * 0.02562 * 23 22 20 41 41 H 1.07994 * 120.34675 * 180.27415 * 24 23 22 42 42 H 1.08005 * 119.45673 * 179.97438 * 25 24 23 43 43 H 1.07997 * 119.71427 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3138 6 7 4.0531 -1.3045 2.5096 7 6 5.3740 -1.3400 2.7753 8 8 6.1583 -0.8002 2.0241 9 6 5.8763 -2.0515 4.0051 10 16 7.6803 -1.9237 4.0815 11 6 7.9872 -2.8136 5.5709 12 1 7.1636 -3.2371 6.1265 13 6 9.2877 -2.9714 6.0296 14 7 10.2916 -2.4557 5.3522 15 14 9.6132 -3.9155 7.6082 16 1 8.3257 -4.3910 8.1751 17 1 10.4858 -5.0812 7.3169 18 1 10.2871 -3.0253 8.5873 19 7 2.0183 -0.6907 -1.1962 20 6 2.1472 -0.0183 -2.3571 21 8 1.8578 1.1610 -2.4118 22 6 2.6394 -0.7154 -3.5644 23 6 2.7773 -0.0284 -4.7766 24 6 3.2476 -0.7253 -5.8754 25 6 3.5586 -2.0670 -5.7439 26 7 3.4133 -2.6899 -4.5901 27 6 2.9694 -2.0702 -3.5162 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6054 -0.2618 2.1370 32 1 1.7516 -1.7716 1.2056 33 1 3.9995 -1.0729 0.4261 34 1 3.8532 0.4368 1.3574 35 1 3.4258 -1.7359 3.1106 36 1 5.4413 -1.5930 4.8933 37 1 5.5884 -3.1018 3.9604 38 1 11.2005 -2.5663 5.6725 39 1 2.2490 -1.6318 -1.1526 40 1 2.5276 1.0198 -4.8509 41 1 3.3710 -0.2271 -6.8256 42 1 3.9256 -2.6136 -6.6001 43 1 2.8643 -2.6142 -2.5892 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075675725.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:15 Heat of formation + Delta-G solvation = -76.020259 kcal Electronic energy + Delta-G solvation = -25091.361879 eV Core-core repulsion = 21261.219957 eV Total energy + Delta-G solvation = -3830.141922 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.69676 -40.66444 -40.15248 -37.72779 -35.64508 -34.58242 -33.70411 -33.36644 -31.96655 -31.07500 -29.20630 -27.65254 -25.87615 -24.61569 -24.25542 -22.42820 -21.82745 -21.55082 -19.85754 -19.15376 -18.03232 -17.82173 -17.42097 -17.24512 -16.90813 -16.87792 -16.52796 -16.18708 -15.89191 -15.76675 -15.15865 -14.89045 -14.75678 -14.59591 -14.45255 -14.43753 -14.14684 -13.60171 -13.55119 -13.20049 -13.15683 -12.99858 -12.91534 -12.63761 -12.44392 -12.39941 -11.93571 -11.70034 -11.35381 -11.15789 -11.01113 -10.96702 -10.50565 -10.38035 -10.26273 -10.16838 -10.05587 -8.66839 -8.34625 -6.12716 -0.41695 0.17437 1.27740 1.41887 1.48028 1.58823 1.61756 1.76436 2.02739 2.25557 2.29694 2.81626 2.99729 3.27952 3.32563 3.66158 3.74186 3.77312 3.80367 3.90939 4.00711 4.03881 4.09332 4.31697 4.40077 4.43734 4.46786 4.52444 4.60953 4.64023 4.80264 4.88699 4.96458 5.00099 5.07872 5.13979 5.31686 5.42377 5.43183 5.45188 5.55238 6.20387 6.38548 6.53051 6.81497 7.06849 7.07232 7.26680 8.74865 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.015085 B = 0.001975 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.700571 B =14172.067180 C =15416.963232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.145 3.855 3 H 0.071 0.929 4 C -0.123 4.123 5 C 0.118 3.882 6 N -0.709 5.709 7 C 0.531 3.469 8 O -0.570 6.570 9 C -0.128 4.128 10 S -0.158 6.158 11 C -0.543 4.543 12 H 0.085 0.915 13 C 0.011 3.989 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.255 1.255 17 H -0.274 1.274 18 H -0.275 1.275 19 N -0.709 5.709 20 C 0.564 3.436 21 O -0.573 6.573 22 C -0.205 4.205 23 C -0.031 4.031 24 C -0.171 4.171 25 C 0.117 3.883 26 N -0.513 5.513 27 C 0.132 3.868 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.420 0.580 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.271 0.729 39 H 0.412 0.588 40 H 0.146 0.854 41 H 0.175 0.825 42 H 0.190 0.810 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.024 -0.133 -17.053 30.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.040 3.960 3 H 0.090 0.910 4 C -0.161 4.161 5 C -0.006 4.006 6 N -0.364 5.364 7 C 0.316 3.684 8 O -0.448 6.448 9 C -0.280 4.280 10 S 0.069 5.931 11 C -0.691 4.691 12 H 0.103 0.897 13 C -0.194 4.194 14 N -0.549 5.549 15 Si 0.822 3.178 16 H -0.178 1.178 17 H -0.200 1.200 18 H -0.200 1.200 19 N -0.362 5.362 20 C 0.351 3.649 21 O -0.453 6.453 22 C -0.210 4.210 23 C -0.058 4.058 24 C -0.190 4.190 25 C -0.039 4.039 26 N -0.221 5.221 27 C -0.026 4.026 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.257 0.743 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.080 0.920 39 H 0.250 0.750 40 H 0.164 0.836 41 H 0.192 0.808 42 H 0.207 0.793 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -23.581 0.733 -18.269 29.839 hybrid contribution -0.445 -0.434 1.733 1.841 sum -24.026 0.299 -16.536 29.168 Atomic orbital electron populations 1.22098 0.93192 1.03370 1.02650 1.20973 0.95235 0.96810 0.82970 0.91034 1.22063 0.91749 1.03879 0.98367 1.21385 0.95561 0.96484 0.87127 1.45680 1.05975 1.57194 1.27540 1.20122 0.83038 0.79289 0.85905 1.90706 1.56791 1.46745 1.50566 1.23369 1.00786 1.04499 0.99296 1.85644 0.99989 1.73364 1.34096 1.23235 0.96192 1.39859 1.09818 0.89736 1.26161 0.94740 0.96601 1.01878 1.70197 0.99932 1.44284 1.40481 0.84886 0.78831 0.77559 0.76544 1.17847 1.19987 1.20048 1.46001 1.66422 1.14634 1.09103 1.18255 0.76914 0.85997 0.83692 1.90761 1.52023 1.16983 1.85577 1.21030 1.07823 0.96586 0.95563 1.21968 0.91533 1.01092 0.91199 1.22520 0.99995 0.95793 1.00719 1.23616 0.92053 0.92657 0.95549 1.67772 1.13790 1.40234 1.00338 1.23252 0.91194 0.90314 0.97854 0.89760 0.93938 0.90554 0.87100 0.87578 0.92628 0.93530 0.74262 0.87080 0.86913 0.92039 0.75029 0.83627 0.80804 0.79287 0.80710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.48 71.98 0.68 -0.91 16 2 C 0.14 1.89 2.57 44.99 0.12 2.00 16 3 H 0.07 1.32 7.58 -2.39 -0.02 1.30 16 4 C -0.12 -1.16 4.87 30.59 0.15 -1.01 16 5 C 0.12 2.32 5.56 86.38 0.48 2.80 16 6 N -0.71 -15.76 5.56 -463.07 -2.57 -18.33 16 7 C 0.53 18.93 7.85 87.66 0.69 19.62 16 8 O -0.57 -26.47 15.86 -3.04 -0.05 -26.51 16 9 C -0.13 -4.91 6.16 71.23 0.44 -4.47 16 10 S -0.16 -8.75 20.57 -56.49 -1.16 -9.92 16 11 C -0.54 -30.78 9.50 67.96 0.65 -30.13 16 12 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 13 C 0.01 0.61 5.49 84.86 0.47 1.08 16 14 N -0.91 -56.17 13.22 21.65 0.29 -55.88 16 15 Si 1.00 43.35 29.55 68.60 2.03 45.38 16 16 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 18 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 19 N -0.71 -10.03 4.48 -445.40 -2.00 -12.03 16 20 C 0.56 11.49 7.75 86.79 0.67 12.17 16 21 O -0.57 -15.80 16.08 -3.87 -0.06 -15.86 16 22 C -0.20 -3.67 5.89 -19.99 -0.12 -3.79 16 23 C -0.03 -0.50 9.72 22.73 0.22 -0.28 16 24 C -0.17 -1.90 10.10 22.33 0.23 -1.68 16 25 C 0.12 1.47 11.17 84.71 0.95 2.42 16 26 N -0.51 -9.01 10.35 -194.75 -2.01 -11.02 16 27 C 0.13 2.12 10.71 85.02 0.91 3.03 16 28 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.11 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.06 1.24 7.75 -2.39 -0.02 1.22 16 34 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.42 5.85 8.47 -92.71 -0.79 5.07 16 36 H 0.11 3.78 8.14 -2.39 -0.02 3.77 16 37 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 38 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 39 H 0.41 3.80 6.67 -92.71 -0.62 3.18 16 40 H 0.15 2.30 7.74 -2.91 -0.02 2.28 16 41 H 0.17 0.77 8.06 -2.91 -0.02 0.74 16 42 H 0.19 1.13 8.06 -2.91 -0.02 1.11 16 43 H 0.18 1.86 6.42 -2.91 -0.02 1.84 16 Total: -1.00 -87.86 385.81 0.62 -87.24 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -0.36 Total: 16.10 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 6.52 Total: 0.83 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -6.30 Total: -97.26 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -0.11 Total: -42.37 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.16 Total: -9.92 kcal Total: -87.86 0.62 -87.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675725.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.216 kcal (2) G-P(sol) polarization free energy of solvation -87.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds