Wall clock time and date at job start Tue Mar 31 2020 20:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.52999 * 109.47451 * 184.99880 * 4 2 1 6 6 N 1.46500 * 109.47120 * 180.02562 * 5 4 2 7 7 C 1.34777 * 120.00097 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99903 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00178 * 179.97438 * 7 6 5 10 10 S 1.80995 * 109.47230 * 179.97438 * 9 7 6 11 11 C 1.76197 * 100.00178 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00117 * 359.97438 * 11 10 9 13 13 C 1.38801 * 120.00090 * 180.02562 * 11 10 9 14 14 N 1.31632 * 120.00171 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99957 * 359.97438 * 13 11 10 16 16 H 1.48492 * 109.47225 * 90.00340 * 15 13 11 17 17 H 1.48502 * 109.46919 * 210.00471 * 15 13 11 18 18 H 1.48502 * 109.47184 * 329.99902 * 15 13 11 19 19 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 20 20 C 1.34780 * 119.99910 * 85.00011 * 19 2 1 21 21 O 1.21520 * 119.99606 * 0.02562 * 20 19 2 22 22 C 1.48146 * 119.99869 * 180.02562 * 20 19 2 23 23 C 1.39811 * 120.92606 * 359.71533 * 22 20 19 24 24 C 1.38143 * 119.00432 * 179.79884 * 23 22 20 25 25 N 1.31814 * 120.89823 * 0.48839 * 24 23 22 26 26 C 1.31815 * 122.04427 * 359.74185 * 25 24 23 27 27 C 1.38152 * 120.89677 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 32 32 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 33 33 H 1.08996 * 109.47443 * 300.00108 * 5 4 2 34 34 H 1.09000 * 109.46961 * 60.00367 * 5 4 2 35 35 H 0.97004 * 120.00316 * 359.97438 * 6 5 4 36 36 H 1.09000 * 109.47343 * 299.99792 * 9 7 6 37 37 H 1.09000 * 109.46969 * 59.99899 * 9 7 6 38 38 H 0.96989 * 120.00269 * 179.97438 * 14 13 11 39 39 H 0.96994 * 119.99975 * 265.00388 * 19 2 1 40 40 H 1.08005 * 120.49465 * 0.02562 * 23 22 20 41 41 H 1.07998 * 119.55627 * 180.23365 * 24 23 22 42 42 H 1.08002 * 119.55221 * 180.02562 * 26 25 24 43 43 H 1.08000 * 120.49667 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 7 4.0532 -1.3043 2.5096 7 6 5.3740 -1.3398 2.7753 8 8 6.1583 -0.7992 2.0246 9 6 5.8764 -2.0501 4.0058 10 16 7.6802 -1.9226 4.0819 11 6 7.9873 -2.8125 5.5713 12 1 7.1636 -3.2351 6.1275 13 6 9.2877 -2.9695 6.0305 14 7 9.5171 -3.6339 7.1434 15 14 10.7124 -2.2379 5.0689 16 1 10.9746 -0.8567 5.5468 17 1 11.9253 -3.0704 5.2712 18 1 10.3697 -2.2053 3.6244 19 7 2.0184 -0.6906 -1.1961 20 6 2.1471 -0.0183 -2.3571 21 8 1.8585 1.1609 -2.4115 22 6 2.6405 -0.7169 -3.5668 23 6 2.9837 -2.0715 -3.5245 24 6 3.4355 -2.6843 -4.6772 25 7 3.5536 -2.0074 -5.8020 26 6 3.2455 -0.7284 -5.8842 27 6 2.7816 -0.0382 -4.7810 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.6054 -0.2617 2.1370 32 1 1.7517 -1.7714 1.2056 33 1 3.9995 -1.0728 0.4261 34 1 3.8532 0.4370 1.3574 35 1 3.4259 -1.7358 3.1107 36 1 5.4415 -1.5908 4.8935 37 1 5.5883 -3.1005 3.9619 38 1 10.4258 -3.7439 7.4641 39 1 2.2490 -1.6317 -1.1525 40 1 2.8934 -2.6314 -2.6053 41 1 3.6994 -3.7314 -4.6556 42 1 3.3574 -0.2130 -6.8267 43 1 2.5315 1.0098 -4.8555 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075675740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:20 Heat of formation + Delta-G solvation = -46.180270 kcal Electronic energy + Delta-G solvation = -25138.493457 eV Core-core repulsion = 21309.645494 eV Total energy + Delta-G solvation = -3828.847963 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.09275 -39.76837 -39.25631 -37.01020 -34.66581 -33.47332 -32.46663 -31.99986 -31.42173 -30.21129 -28.30296 -25.65655 -25.47847 -23.99374 -23.54564 -21.85008 -21.10125 -20.49798 -18.74939 -17.89449 -17.29819 -16.46919 -16.35259 -16.19283 -16.09717 -15.74089 -15.54370 -15.32886 -14.98593 -14.40331 -14.28216 -14.22291 -14.02626 -13.87564 -13.84786 -13.41701 -13.00624 -12.82177 -12.51222 -12.35445 -12.21225 -11.81772 -11.69771 -11.41723 -11.28834 -11.03108 -10.69339 -10.63874 -10.40207 -9.96857 -9.88675 -9.70381 -9.67729 -9.55385 -9.08158 -9.01441 -8.53477 -6.95308 -6.31651 -4.03761 0.22214 0.59398 2.43359 2.53288 2.71152 2.91265 3.24665 3.31702 3.38520 3.48470 3.59533 3.93877 4.00776 4.23587 4.30644 4.33227 4.40686 4.42927 4.55719 4.60048 4.70856 4.95072 4.96549 4.99348 5.07417 5.16147 5.23288 5.25478 5.28093 5.30810 5.44487 5.53060 5.60322 5.71875 5.72234 5.77907 5.96110 5.96748 6.09715 6.42729 6.92308 7.41787 7.52260 7.64895 7.91368 8.38545 8.42326 9.14497 10.77517 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.002105 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.372117 B =13295.733679 C =14686.243206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 H 0.096 0.904 4 C -0.140 4.140 5 C 0.120 3.880 6 N -0.738 5.738 7 C 0.529 3.471 8 O -0.518 6.518 9 C -0.124 4.124 10 S -0.142 6.142 11 C -0.522 4.522 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.718 5.718 20 C 0.561 3.439 21 O -0.526 6.526 22 C -0.088 4.088 23 C -0.141 4.141 24 C 0.098 3.902 25 N -0.469 5.469 26 C 0.097 3.903 27 C -0.116 4.116 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.400 0.600 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.271 0.729 39 H 0.401 0.599 40 H 0.139 0.861 41 H 0.164 0.836 42 H 0.164 0.836 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.715 3.394 -20.306 29.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.114 0.886 4 C -0.179 4.179 5 C -0.004 4.004 6 N -0.393 5.393 7 C 0.315 3.685 8 O -0.392 6.392 9 C -0.275 4.275 10 S 0.084 5.916 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.516 5.516 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 N -0.370 5.370 20 C 0.347 3.653 21 O -0.403 6.403 22 C -0.099 4.099 23 C -0.162 4.162 24 C -0.059 4.059 25 N -0.179 5.179 26 C -0.060 4.060 27 C -0.136 4.136 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.234 0.766 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.237 0.763 40 H 0.157 0.843 41 H 0.181 0.819 42 H 0.181 0.819 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -20.178 4.667 -22.176 30.343 hybrid contribution -0.661 -0.743 1.904 2.148 sum -20.839 3.924 -20.272 29.336 Atomic orbital electron populations 1.22171 0.94451 1.02448 1.03038 1.20963 0.94384 0.97841 0.82734 0.88591 1.22143 0.95413 1.02068 0.98247 1.21272 0.92644 0.98100 0.88379 1.45957 1.07751 1.58496 1.27113 1.20309 0.81624 0.79763 0.86776 1.90712 1.54993 1.44395 1.49131 1.23278 1.03119 1.03237 0.97852 1.84819 0.98040 1.73877 1.34838 1.22308 0.97288 1.39555 1.07788 0.89376 1.24718 0.98321 0.93885 0.94411 1.69933 1.21750 1.39426 1.20524 0.86733 0.82151 0.79910 0.83046 1.19197 1.19915 1.15937 1.46018 1.67180 1.14249 1.09572 1.18173 0.77673 0.86458 0.82971 1.90796 1.49452 1.15202 1.84802 1.20376 1.00469 0.94379 0.94721 1.22367 0.98871 0.94259 1.00657 1.22819 0.94968 1.00533 0.87530 1.67591 1.13189 1.08967 1.28126 1.22867 0.94423 0.90121 0.98603 1.22348 0.97153 1.02095 0.92033 0.92212 0.91824 0.91104 0.89074 0.90366 0.91679 0.91408 0.76632 0.88473 0.88456 0.91914 0.76285 0.84295 0.81898 0.81867 0.83363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 9.48 37.16 0.35 -0.56 16 2 C 0.15 0.94 2.57 -67.93 -0.17 0.77 16 3 H 0.10 0.81 7.58 -51.93 -0.39 0.42 16 4 C -0.14 -0.77 4.87 -26.73 -0.13 -0.90 16 5 C 0.12 1.15 5.56 -4.04 -0.02 1.13 16 6 N -0.74 -8.28 5.56 -60.30 -0.33 -8.62 16 7 C 0.53 8.96 7.85 -10.99 -0.09 8.87 16 8 O -0.52 -10.96 15.86 5.56 0.09 -10.87 16 9 C -0.12 -2.31 6.16 36.01 0.22 -2.09 16 10 S -0.14 -3.55 18.55 -107.50 -1.99 -5.55 16 11 C -0.52 -14.85 10.04 30.94 0.31 -14.54 16 12 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 13 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 14 N -0.88 -26.32 13.97 55.49 0.78 -25.55 16 15 Si 0.86 21.66 27.74 -169.99 -4.71 16.94 16 16 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 17 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 19 N -0.72 -4.81 4.49 -54.65 -0.25 -5.05 16 20 C 0.56 5.23 7.76 -12.19 -0.09 5.14 16 21 O -0.53 -6.63 16.11 5.35 0.09 -6.54 16 22 C -0.09 -0.73 5.91 -104.65 -0.62 -1.34 16 23 C -0.14 -0.90 9.62 -39.03 -0.38 -1.28 16 24 C 0.10 0.69 11.17 -17.59 -0.20 0.49 16 25 N -0.47 -4.08 10.34 -13.30 -0.14 -4.22 16 26 C 0.10 0.71 11.17 -17.59 -0.20 0.52 16 27 C -0.12 -0.91 9.68 -39.02 -0.38 -1.29 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.68 7.75 -51.93 -0.40 0.28 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.40 3.21 8.47 -40.82 -0.35 2.87 16 36 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 37 H 0.10 1.66 8.14 -51.91 -0.42 1.24 16 38 H 0.27 7.53 8.31 -40.82 -0.34 7.20 16 39 H 0.40 1.82 6.74 -40.82 -0.28 1.54 16 40 H 0.14 0.50 6.54 -52.48 -0.34 0.16 16 41 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.15 1.08 7.74 -52.49 -0.41 0.67 16 LS Contribution 383.32 15.07 5.78 5.78 Total: -1.00 -37.57 383.32 -8.16 -45.72 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -5.97 Total: 0.37 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -1.48 Total: -2.41 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.06 Total: -43.44 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.17 Total: -17.41 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.94 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.57 -8.16 -45.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.456 kcal (2) G-P(sol) polarization free energy of solvation -37.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds