Wall clock time and date at job start Tue Mar 31 2020 20:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.52999 * 109.47451 * 184.99880 * 4 2 1 6 6 N 1.46500 * 109.47120 * 180.02562 * 5 4 2 7 7 C 1.34777 * 120.00097 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99903 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00178 * 179.97438 * 7 6 5 10 10 S 1.80995 * 109.47230 * 179.97438 * 9 7 6 11 11 C 1.76197 * 100.00178 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00117 * 359.97438 * 11 10 9 13 13 C 1.38801 * 120.00090 * 180.02562 * 11 10 9 14 14 N 1.31632 * 120.00171 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99957 * 359.97438 * 13 11 10 16 16 H 1.48492 * 109.47225 * 90.00340 * 15 13 11 17 17 H 1.48502 * 109.46919 * 210.00471 * 15 13 11 18 18 H 1.48502 * 109.47184 * 329.99902 * 15 13 11 19 19 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 20 20 C 1.34780 * 119.99910 * 85.00011 * 19 2 1 21 21 O 1.21520 * 119.99606 * 0.02562 * 20 19 2 22 22 C 1.48146 * 119.99869 * 180.02562 * 20 19 2 23 23 C 1.39811 * 120.92606 * 359.71533 * 22 20 19 24 24 C 1.38143 * 119.00432 * 179.79884 * 23 22 20 25 25 N 1.31814 * 120.89823 * 0.48839 * 24 23 22 26 26 C 1.31815 * 122.04427 * 359.74185 * 25 24 23 27 27 C 1.38152 * 120.89677 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 32 32 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 33 33 H 1.08996 * 109.47443 * 300.00108 * 5 4 2 34 34 H 1.09000 * 109.46961 * 60.00367 * 5 4 2 35 35 H 0.97004 * 120.00316 * 359.97438 * 6 5 4 36 36 H 1.09000 * 109.47343 * 299.99792 * 9 7 6 37 37 H 1.09000 * 109.46969 * 59.99899 * 9 7 6 38 38 H 0.96989 * 120.00269 * 179.97438 * 14 13 11 39 39 H 0.96994 * 119.99975 * 265.00388 * 19 2 1 40 40 H 1.08005 * 120.49465 * 0.02562 * 23 22 20 41 41 H 1.07998 * 119.55627 * 180.23365 * 24 23 22 42 42 H 1.08002 * 119.55221 * 180.02562 * 26 25 24 43 43 H 1.08000 * 120.49667 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 7 4.0532 -1.3043 2.5096 7 6 5.3740 -1.3398 2.7753 8 8 6.1583 -0.7992 2.0246 9 6 5.8764 -2.0501 4.0058 10 16 7.6802 -1.9226 4.0819 11 6 7.9873 -2.8125 5.5713 12 1 7.1636 -3.2351 6.1275 13 6 9.2877 -2.9695 6.0305 14 7 9.5171 -3.6339 7.1434 15 14 10.7124 -2.2379 5.0689 16 1 10.9746 -0.8567 5.5468 17 1 11.9253 -3.0704 5.2712 18 1 10.3697 -2.2053 3.6244 19 7 2.0184 -0.6906 -1.1961 20 6 2.1471 -0.0183 -2.3571 21 8 1.8585 1.1609 -2.4115 22 6 2.6405 -0.7169 -3.5668 23 6 2.9837 -2.0715 -3.5245 24 6 3.4355 -2.6843 -4.6772 25 7 3.5536 -2.0074 -5.8020 26 6 3.2455 -0.7284 -5.8842 27 6 2.7816 -0.0382 -4.7810 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.6054 -0.2617 2.1370 32 1 1.7517 -1.7714 1.2056 33 1 3.9995 -1.0728 0.4261 34 1 3.8532 0.4370 1.3574 35 1 3.4259 -1.7358 3.1107 36 1 5.4415 -1.5908 4.8935 37 1 5.5883 -3.1005 3.9619 38 1 10.4258 -3.7439 7.4641 39 1 2.2490 -1.6317 -1.1525 40 1 2.8934 -2.6314 -2.6053 41 1 3.6994 -3.7314 -4.6556 42 1 3.3574 -0.2130 -6.8267 43 1 2.5315 1.0098 -4.8555 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075675740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:20 Heat of formation + Delta-G solvation = -74.477398 kcal Electronic energy + Delta-G solvation = -25139.720512 eV Core-core repulsion = 21309.645494 eV Total energy + Delta-G solvation = -3830.075018 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.70340 -40.70613 -40.21009 -37.76190 -35.67811 -34.66924 -34.12353 -32.64464 -32.09514 -31.24910 -29.24226 -27.84094 -26.09479 -24.56590 -24.25880 -22.46301 -21.86494 -21.58482 -19.91854 -19.29829 -17.97374 -17.76446 -17.33525 -17.04170 -16.95185 -16.72266 -16.55839 -16.38539 -16.10680 -15.67306 -15.23199 -14.98621 -14.89449 -14.84141 -14.69572 -14.53627 -14.44517 -13.65332 -13.62953 -13.34536 -13.03065 -13.01364 -12.72684 -12.71752 -12.44716 -12.39448 -11.96465 -11.85836 -11.41581 -11.17314 -11.03768 -11.01145 -10.55184 -10.52564 -10.27615 -10.22534 -10.11107 -8.99490 -8.51557 -6.22069 -0.37514 0.06982 0.99627 1.31113 1.46770 1.55918 1.56919 1.76811 1.95282 2.21493 2.25978 2.72286 2.82179 2.86768 3.43848 3.48635 3.69843 3.74965 3.81479 3.92106 3.99018 4.03482 4.06369 4.25299 4.40574 4.44231 4.48759 4.50784 4.61175 4.74747 4.78119 4.80000 4.87637 4.96599 5.02444 5.11599 5.30214 5.40038 5.42144 5.58493 5.70981 6.11844 6.35412 6.48688 6.88057 6.93981 7.02437 7.21261 8.60641 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.002105 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.372117 B =13295.733679 C =14686.243206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.144 3.856 3 H 0.072 0.928 4 C -0.124 4.124 5 C 0.119 3.881 6 N -0.709 5.709 7 C 0.533 3.467 8 O -0.566 6.566 9 C -0.110 4.110 10 S -0.182 6.182 11 C -0.526 4.526 12 H 0.064 0.936 13 C 0.045 3.955 14 N -0.916 5.916 15 Si 0.913 3.087 16 H -0.264 1.264 17 H -0.260 1.260 18 H -0.237 1.237 19 N -0.705 5.705 20 C 0.558 3.442 21 O -0.569 6.569 22 C -0.105 4.105 23 C -0.133 4.133 24 C 0.090 3.910 25 N -0.493 5.493 26 C 0.092 3.908 27 C -0.128 4.128 28 H 0.076 0.924 29 H 0.041 0.959 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.059 0.941 34 H 0.048 0.952 35 H 0.420 0.580 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.277 0.723 39 H 0.414 0.586 40 H 0.169 0.831 41 H 0.189 0.811 42 H 0.185 0.815 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.155 2.420 -20.616 31.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.040 3.960 3 H 0.090 0.910 4 C -0.162 4.162 5 C -0.005 4.005 6 N -0.363 5.363 7 C 0.318 3.682 8 O -0.445 6.445 9 C -0.261 4.261 10 S 0.045 5.955 11 C -0.674 4.674 12 H 0.083 0.917 13 C -0.160 4.160 14 N -0.554 5.554 15 Si 0.735 3.265 16 H -0.189 1.189 17 H -0.184 1.184 18 H -0.161 1.161 19 N -0.358 5.358 20 C 0.345 3.655 21 O -0.448 6.448 22 C -0.116 4.116 23 C -0.153 4.153 24 C -0.066 4.066 25 N -0.203 5.203 26 C -0.064 4.064 27 C -0.148 4.148 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.258 0.742 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.086 0.914 39 H 0.252 0.748 40 H 0.186 0.814 41 H 0.205 0.795 42 H 0.202 0.798 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -21.678 3.647 -22.458 31.426 hybrid contribution -0.386 -0.459 2.002 2.090 sum -22.065 3.188 -20.456 30.256 Atomic orbital electron populations 1.22108 0.93272 1.03412 1.02643 1.20980 0.95189 0.96861 0.82977 0.91004 1.22064 0.91927 1.03908 0.98252 1.21400 0.95439 0.96578 0.87109 1.45674 1.05963 1.57080 1.27578 1.19999 0.83149 0.79324 0.85722 1.90706 1.56655 1.46669 1.50469 1.23273 0.97937 1.05143 0.99782 1.84784 1.04573 1.73342 1.32814 1.22452 0.96777 1.39333 1.08846 0.91741 1.25551 1.00818 0.94355 0.95308 1.70008 1.22714 1.40755 1.21937 0.85883 0.79624 0.79386 0.81574 1.18890 1.18389 1.16104 1.45972 1.66093 1.14765 1.08928 1.18404 0.77209 0.86056 0.83845 1.90771 1.51542 1.16996 1.85506 1.20469 1.01386 0.95381 0.94394 1.22637 0.97547 0.93445 1.01720 1.23307 0.94431 1.01639 0.87219 1.67629 1.13959 1.09524 1.29207 1.23186 0.93986 0.89987 0.99283 1.22449 0.97663 1.02223 0.92495 0.90491 0.93991 0.89797 0.87190 0.87491 0.92271 0.93394 0.74215 0.86770 0.86460 0.91392 0.74765 0.81385 0.79458 0.79843 0.83622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.48 71.98 0.68 -0.70 16 2 C 0.14 1.59 2.57 44.99 0.12 1.71 16 3 H 0.07 1.19 7.58 -2.39 -0.02 1.17 16 4 C -0.12 -0.89 4.87 30.59 0.15 -0.74 16 5 C 0.12 1.97 5.56 86.38 0.48 2.45 16 6 N -0.71 -13.59 5.56 -463.07 -2.57 -16.17 16 7 C 0.53 16.92 7.85 87.66 0.69 17.61 16 8 O -0.57 -23.50 15.86 -3.03 -0.05 -23.54 16 9 C -0.11 -3.89 6.16 71.24 0.44 -3.45 16 10 S -0.18 -8.98 18.55 -56.49 -1.05 -10.03 16 11 C -0.53 -30.05 10.04 67.95 0.68 -29.37 16 12 H 0.06 3.86 8.03 -2.91 -0.02 3.83 16 13 C 0.05 2.62 5.50 84.86 0.47 3.08 16 14 N -0.92 -55.13 13.97 21.65 0.30 -54.83 16 15 Si 0.91 44.68 27.74 68.60 1.90 46.58 16 16 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 17 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 18 H -0.24 -11.59 6.74 99.48 0.67 -10.91 16 19 N -0.70 -8.24 4.49 -445.12 -2.00 -10.24 16 20 C 0.56 10.28 7.76 86.87 0.67 10.95 16 21 O -0.57 -14.87 16.11 -3.78 -0.06 -14.93 16 22 C -0.11 -1.68 5.91 -19.88 -0.12 -1.80 16 23 C -0.13 -1.47 9.62 22.63 0.22 -1.25 16 24 C 0.09 1.12 11.17 84.67 0.95 2.06 16 25 N -0.49 -8.16 10.34 -196.01 -2.03 -10.18 16 26 C 0.09 1.33 11.17 84.67 0.95 2.27 16 27 C -0.13 -2.06 9.68 22.63 0.22 -1.84 16 28 H 0.08 0.43 8.14 -2.39 -0.02 0.42 16 29 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.06 1.10 7.75 -2.39 -0.02 1.08 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.42 4.85 8.47 -92.71 -0.79 4.06 16 36 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 37 H 0.12 3.68 8.14 -2.40 -0.02 3.66 16 38 H 0.28 15.41 8.31 -92.72 -0.77 14.64 16 39 H 0.41 2.53 6.74 -92.71 -0.63 1.91 16 40 H 0.17 0.69 6.54 -2.91 -0.02 0.67 16 41 H 0.19 1.21 8.06 -2.91 -0.02 1.18 16 42 H 0.18 1.63 8.06 -2.91 -0.02 1.60 16 43 H 0.15 2.31 7.74 -2.91 -0.02 2.29 16 Total: -1.00 -84.12 383.32 0.64 -83.48 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -0.40 Total: 8.87 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 6.59 Total: 0.99 kcal Atomic # 7 Polarization: -85.12 SS G_CDS: -6.29 Total: -91.42 kcal Atomic # 8 Polarization: -38.36 SS G_CDS: -0.11 Total: -38.47 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.90 Total: 46.58 kcal Atomic # 16 Polarization: -8.98 SS G_CDS: -1.05 Total: -10.03 kcal Total: -84.12 0.64 -83.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.000 kcal (2) G-P(sol) polarization free energy of solvation -84.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds