Wall clock time and date at job start Tue Mar 31 2020 20:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 110.28824 * 2 1 4 4 C 1.54007 * 110.32541 * 237.85980 * 2 1 3 5 5 N 1.47486 * 107.08154 * 242.31192 * 4 2 1 6 6 C 1.34773 * 127.03006 * 154.52271 * 5 4 2 7 7 O 1.21627 * 120.00373 * 185.47414 * 6 5 4 8 8 C 1.47175 * 120.00113 * 5.47255 * 6 5 4 9 9 C 1.36608 * 125.15978 * 186.22203 * 8 6 5 10 10 C 1.36798 * 114.74403 * 179.84896 * 9 8 6 11 11 C 1.36613 * 114.74544 * 0.43746 * 10 9 8 12 12 C 1.47172 * 125.16491 * 179.76100 * 11 10 9 13 13 N 1.34770 * 120.00233 * 179.97438 * 12 11 10 14 14 O 1.21623 * 119.99477 * 359.97438 * 12 11 10 15 15 S 1.75832 * 125.16034 * 6.52396 * 8 6 5 16 16 C 1.48114 * 105.93478 * 334.78204 * 5 4 2 17 17 C 1.54590 * 103.42308 * 39.02323 * 16 5 4 18 18 H 1.09001 * 110.57646 * 81.17029 * 17 16 5 19 19 C 1.53003 * 110.99011 * 204.37121 * 17 16 5 20 20 N 1.46489 * 109.47404 * 288.65620 * 19 17 16 21 21 C 1.36938 * 120.00225 * 179.97438 * 20 19 17 22 22 H 1.07994 * 120.00295 * 0.02562 * 21 20 19 23 23 C 1.38820 * 119.99910 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99884 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00313 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.46670 * 90.00059 * 25 23 21 27 27 H 1.48488 * 109.47051 * 210.00207 * 25 23 21 28 28 H 1.48499 * 109.46809 * 330.00487 * 25 23 21 29 29 H 1.09005 * 109.47111 * 180.68311 * 1 2 3 30 30 H 1.08998 * 109.46709 * 300.68404 * 1 2 3 31 31 H 1.09002 * 109.46854 * 60.68535 * 1 2 3 32 32 H 1.09001 * 109.90796 * 122.95312 * 4 2 1 33 33 H 1.08999 * 110.07212 * 1.76602 * 4 2 1 34 34 H 1.08002 * 122.62997 * 0.02562 * 9 8 6 35 35 H 1.08003 * 122.62749 * 180.19612 * 10 9 8 36 36 H 0.97006 * 120.00242 * 0.02562 * 13 12 11 37 37 H 0.97001 * 120.00347 * 180.02562 * 13 12 11 38 38 H 1.09000 * 110.65878 * 157.50909 * 16 5 4 39 39 H 1.09001 * 110.66246 * 280.62439 * 16 5 4 40 40 H 1.08998 * 109.46954 * 48.65916 * 19 17 16 41 41 H 1.09004 * 109.47003 * 168.65193 * 19 17 16 42 42 H 0.97002 * 120.00398 * 359.97438 * 20 19 17 43 43 H 0.96994 * 120.00112 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7683 -1.2229 5 7 2.8298 -1.9204 -0.7100 6 6 3.0645 -3.0860 -1.3446 7 8 3.6296 -3.9923 -0.7626 8 6 2.6371 -3.2624 -2.7418 9 6 2.7113 -4.4308 -3.4456 10 6 2.2505 -4.3550 -4.7315 11 6 1.7999 -3.1208 -5.1056 12 6 1.2616 -2.7813 -6.4326 13 7 0.8445 -1.5259 -6.6896 14 8 1.1933 -3.6339 -7.2973 15 16 1.9606 -1.9992 -3.7608 16 6 3.2816 -1.5369 0.6474 17 6 2.0693 -0.7720 1.2263 18 1 1.3209 -1.4692 1.6032 19 6 2.5072 0.1967 2.3267 20 7 2.9001 -0.5616 3.5169 21 6 3.3317 0.0974 4.6370 22 1 3.3821 1.1761 4.6432 23 6 3.7036 -0.6212 5.7651 24 7 4.1179 0.0122 6.8419 25 14 3.6145 -2.4871 5.7553 26 1 4.9075 -3.0418 5.2803 27 1 3.3410 -2.9767 7.1302 28 1 2.5242 -2.9258 4.8475 29 1 -0.3633 -1.0276 0.0123 30 1 -0.3633 0.5244 0.8838 31 1 -0.3633 0.5032 -0.8961 32 1 2.7167 -0.1222 -1.8111 33 1 1.2354 -1.1173 -1.8376 34 1 3.1004 -5.3437 -3.0194 35 1 2.2471 -5.2034 -5.3998 36 1 0.8993 -0.8458 -6.0001 37 1 0.4894 -1.3022 -7.5642 38 1 3.4980 -2.4223 1.2451 39 1 4.1541 -0.8858 0.5927 40 1 3.3539 0.7865 1.9758 41 1 1.6799 0.8613 2.5760 42 1 2.8546 -1.5305 3.5117 43 1 4.3781 -0.4899 7.6299 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106759563.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:35 Heat of formation + Delta-G solvation = -21.729370 kcal Electronic energy + Delta-G solvation = -26291.561965 eV Core-core repulsion = 22463.774273 eV Total energy + Delta-G solvation = -3827.787692 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.42626 -40.00881 -38.47684 -37.18108 -34.96570 -34.29640 -33.09113 -31.66763 -30.72570 -29.45947 -27.08018 -26.42706 -25.19829 -23.10511 -22.25744 -21.42104 -20.95902 -20.26367 -19.53195 -18.52186 -17.61029 -17.49207 -17.17541 -16.29876 -15.97750 -15.74443 -15.36275 -15.06355 -14.67390 -14.49324 -14.30740 -13.89840 -13.71644 -13.49329 -13.33424 -13.07985 -12.92640 -12.70160 -12.53382 -12.38466 -12.17318 -11.74008 -11.59142 -11.34549 -10.99752 -10.83241 -10.71142 -10.65156 -10.45374 -10.34041 -10.26580 -10.13900 -9.61749 -9.38839 -9.15777 -8.94205 -8.85043 -7.28148 -5.79792 -3.16198 -0.37034 0.80765 1.18304 1.63844 2.58623 2.61596 2.86438 2.87593 3.37807 3.41422 3.46227 4.03996 4.27472 4.32179 4.54559 4.57724 4.62327 4.72217 4.89495 4.97542 5.11071 5.27162 5.29717 5.43696 5.47842 5.48698 5.56233 5.57731 5.62846 5.78698 5.78979 5.85763 5.92917 6.00356 6.06211 6.14857 6.23303 6.53382 6.62978 6.64948 7.21827 7.60293 7.80193 7.94784 8.38824 9.17196 9.89765 10.08309 11.38321 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.023153 B = 0.002573 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.033204 B =10879.872106 C =11800.793243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.095 0.905 4 C 0.091 3.909 5 N -0.616 5.616 6 C 0.601 3.399 7 O -0.519 6.519 8 C -0.213 4.213 9 C -0.075 4.075 10 C -0.062 4.062 11 C -0.260 4.260 12 C 0.597 3.403 13 N -0.849 5.849 14 O -0.528 6.528 15 S 0.201 5.799 16 C 0.113 3.887 17 C -0.108 4.108 18 H 0.085 0.915 19 C 0.170 3.830 20 N -0.757 5.757 21 C -0.247 4.247 22 H 0.091 0.909 23 C 0.006 3.994 24 N -0.933 5.933 25 Si 0.883 3.117 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.277 1.277 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.162 0.838 35 H 0.158 0.842 36 H 0.400 0.600 37 H 0.411 0.589 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.031 0.969 41 H 0.033 0.967 42 H 0.361 0.639 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.397 -0.502 -27.844 29.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.113 0.887 4 C -0.034 4.034 5 N -0.349 5.349 6 C 0.388 3.612 7 O -0.396 6.396 8 C -0.335 4.335 9 C -0.107 4.107 10 C -0.095 4.095 11 C -0.381 4.381 12 C 0.381 3.619 13 N -0.413 5.413 14 O -0.405 6.405 15 S 0.470 5.530 16 C -0.008 4.008 17 C -0.127 4.127 18 H 0.104 0.896 19 C 0.042 3.958 20 N -0.402 5.402 21 C -0.376 4.376 22 H 0.108 0.892 23 C -0.190 4.190 24 N -0.580 5.580 25 Si 0.713 3.287 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.203 1.203 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.179 0.821 35 H 0.176 0.824 36 H 0.229 0.771 37 H 0.242 0.758 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.194 0.806 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.315 0.015 -27.664 28.887 hybrid contribution 0.160 -2.312 -0.092 2.319 sum -8.155 -2.297 -27.756 29.020 Atomic orbital electron populations 1.21868 0.93775 1.02153 1.02363 1.22050 0.96640 0.99831 0.92806 0.88702 1.22470 0.95604 0.87890 0.97410 1.48684 1.53248 1.14274 1.18724 1.16611 0.79509 0.81350 0.83749 1.90870 1.42712 1.39745 1.66255 1.24909 1.11235 0.98528 0.98838 1.20610 0.98692 0.98547 0.92879 1.20582 0.96068 0.97072 0.95755 1.25098 1.13372 1.00279 0.99379 1.17060 0.76740 0.82537 0.85597 1.43675 1.67441 1.11107 1.19052 1.90875 1.55180 1.48053 1.46371 1.84140 1.57400 1.11184 1.00288 1.22622 0.97303 1.00260 0.80602 1.22604 0.97050 0.98072 0.95015 0.89636 1.20598 0.97321 0.92490 0.85353 1.42725 1.80941 1.04539 1.12024 1.19019 1.36084 0.93133 0.89390 0.89167 1.24673 1.01070 0.97313 0.95921 1.69697 1.50363 1.34399 1.03586 0.86582 0.78028 0.87242 0.76882 1.20907 1.21682 1.20326 0.92591 0.91402 0.92454 0.90611 0.90457 0.82071 0.82409 0.77128 0.75752 0.89259 0.89802 0.95097 0.94904 0.80599 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.90 37.16 0.33 -0.86 16 2 C -0.09 -0.88 3.17 -89.24 -0.28 -1.16 16 3 H 0.09 0.80 7.85 -51.93 -0.41 0.40 16 4 C 0.09 0.79 5.05 -2.98 -0.02 0.77 16 5 N -0.62 -7.56 3.29 -171.34 -0.56 -8.13 16 6 C 0.60 8.22 7.86 -12.63 -0.10 8.12 16 7 O -0.52 -9.05 17.02 5.25 0.09 -8.96 16 8 C -0.21 -2.25 6.36 -36.54 -0.23 -2.48 16 9 C -0.07 -0.72 9.89 -40.69 -0.40 -1.12 16 10 C -0.06 -0.54 9.88 -40.69 -0.40 -0.94 16 11 C -0.26 -2.18 6.46 -36.54 -0.24 -2.42 16 12 C 0.60 5.19 8.07 -12.64 -0.10 5.09 16 13 N -0.85 -3.91 8.87 30.37 0.27 -3.64 16 14 O -0.53 -6.55 17.65 5.26 0.09 -6.45 16 15 S 0.20 1.40 18.08 -107.50 -1.94 -0.54 16 16 C 0.11 1.60 6.46 -2.32 -0.01 1.58 16 17 C -0.11 -1.44 2.60 -88.93 -0.23 -1.68 16 18 H 0.09 1.24 7.86 -51.93 -0.41 0.83 16 19 C 0.17 2.92 5.58 -4.05 -0.02 2.90 16 20 N -0.76 -17.16 5.33 -59.91 -0.32 -17.48 16 21 C -0.25 -6.80 10.47 -15.06 -0.16 -6.96 16 22 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 23 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 24 N -0.93 -29.05 13.97 55.49 0.78 -28.28 16 25 Si 0.88 22.17 27.74 -169.99 -4.71 17.46 16 26 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.53 8.04 -51.93 -0.42 0.11 16 33 H 0.08 0.56 5.25 -39.57 -0.21 0.36 16 34 H 0.16 1.48 8.04 -52.49 -0.42 1.05 16 35 H 0.16 1.23 8.04 -52.48 -0.42 0.81 16 36 H 0.40 0.96 7.93 -40.82 -0.32 0.64 16 37 H 0.41 1.27 8.93 -40.82 -0.36 0.90 16 38 H 0.09 1.47 7.81 -51.93 -0.41 1.06 16 39 H 0.08 1.16 7.95 -51.93 -0.41 0.75 16 40 H 0.03 0.53 8.00 -51.93 -0.42 0.11 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.36 8.16 5.53 -40.82 -0.23 7.94 16 43 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -36.13 369.12 -8.43 -44.56 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.71 Total: 4.99 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -1.96 Total: 0.92 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.16 Total: -57.53 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.18 Total: -15.42 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.71 Total: 17.46 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -1.94 Total: -0.54 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.13 -8.43 -44.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106759563.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.829 kcal (2) G-P(sol) polarization free energy of solvation -36.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds