Wall clock time and date at job start Tue Mar 31 2020 20:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 110.28824 * 2 1 4 4 C 1.54007 * 110.32541 * 237.85980 * 2 1 3 5 5 N 1.47486 * 107.08154 * 242.31192 * 4 2 1 6 6 C 1.34773 * 127.03006 * 154.52271 * 5 4 2 7 7 O 1.21627 * 120.00373 * 185.47414 * 6 5 4 8 8 C 1.47175 * 120.00113 * 5.47255 * 6 5 4 9 9 C 1.36608 * 125.15978 * 186.22203 * 8 6 5 10 10 C 1.36798 * 114.74403 * 179.84896 * 9 8 6 11 11 C 1.36613 * 114.74544 * 0.43746 * 10 9 8 12 12 C 1.47172 * 125.16491 * 179.76100 * 11 10 9 13 13 N 1.34770 * 120.00233 * 179.97438 * 12 11 10 14 14 O 1.21623 * 119.99477 * 359.97438 * 12 11 10 15 15 S 1.75832 * 125.16034 * 6.52396 * 8 6 5 16 16 C 1.48114 * 105.93478 * 334.78204 * 5 4 2 17 17 C 1.54590 * 103.42308 * 39.02323 * 16 5 4 18 18 H 1.09001 * 110.57646 * 81.17029 * 17 16 5 19 19 C 1.53003 * 110.99011 * 204.37121 * 17 16 5 20 20 N 1.46489 * 109.47404 * 288.65620 * 19 17 16 21 21 C 1.36938 * 120.00225 * 179.97438 * 20 19 17 22 22 H 1.07994 * 120.00295 * 0.02562 * 21 20 19 23 23 C 1.38820 * 119.99910 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99884 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00313 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.46670 * 90.00059 * 25 23 21 27 27 H 1.48488 * 109.47051 * 210.00207 * 25 23 21 28 28 H 1.48499 * 109.46809 * 330.00487 * 25 23 21 29 29 H 1.09005 * 109.47111 * 180.68311 * 1 2 3 30 30 H 1.08998 * 109.46709 * 300.68404 * 1 2 3 31 31 H 1.09002 * 109.46854 * 60.68535 * 1 2 3 32 32 H 1.09001 * 109.90796 * 122.95312 * 4 2 1 33 33 H 1.08999 * 110.07212 * 1.76602 * 4 2 1 34 34 H 1.08002 * 122.62997 * 0.02562 * 9 8 6 35 35 H 1.08003 * 122.62749 * 180.19612 * 10 9 8 36 36 H 0.97006 * 120.00242 * 0.02562 * 13 12 11 37 37 H 0.97001 * 120.00347 * 180.02562 * 13 12 11 38 38 H 1.09000 * 110.65878 * 157.50909 * 16 5 4 39 39 H 1.09001 * 110.66246 * 280.62439 * 16 5 4 40 40 H 1.08998 * 109.46954 * 48.65916 * 19 17 16 41 41 H 1.09004 * 109.47003 * 168.65193 * 19 17 16 42 42 H 0.97002 * 120.00398 * 359.97438 * 20 19 17 43 43 H 0.96994 * 120.00112 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7683 -1.2229 5 7 2.8298 -1.9204 -0.7100 6 6 3.0645 -3.0860 -1.3446 7 8 3.6296 -3.9923 -0.7626 8 6 2.6371 -3.2624 -2.7418 9 6 2.7113 -4.4308 -3.4456 10 6 2.2505 -4.3550 -4.7315 11 6 1.7999 -3.1208 -5.1056 12 6 1.2616 -2.7813 -6.4326 13 7 0.8445 -1.5259 -6.6896 14 8 1.1933 -3.6339 -7.2973 15 16 1.9606 -1.9992 -3.7608 16 6 3.2816 -1.5369 0.6474 17 6 2.0693 -0.7720 1.2263 18 1 1.3209 -1.4692 1.6032 19 6 2.5072 0.1967 2.3267 20 7 2.9001 -0.5616 3.5169 21 6 3.3317 0.0974 4.6370 22 1 3.3821 1.1761 4.6432 23 6 3.7036 -0.6212 5.7651 24 7 4.1179 0.0122 6.8419 25 14 3.6145 -2.4871 5.7553 26 1 4.9075 -3.0418 5.2803 27 1 3.3410 -2.9767 7.1302 28 1 2.5242 -2.9258 4.8475 29 1 -0.3633 -1.0276 0.0123 30 1 -0.3633 0.5244 0.8838 31 1 -0.3633 0.5032 -0.8961 32 1 2.7167 -0.1222 -1.8111 33 1 1.2354 -1.1173 -1.8376 34 1 3.1004 -5.3437 -3.0194 35 1 2.2471 -5.2034 -5.3998 36 1 0.8993 -0.8458 -6.0001 37 1 0.4894 -1.3022 -7.5642 38 1 3.4980 -2.4223 1.2451 39 1 4.1541 -0.8858 0.5927 40 1 3.3539 0.7865 1.9758 41 1 1.6799 0.8613 2.5760 42 1 2.8546 -1.5305 3.5117 43 1 4.3781 -0.4899 7.6299 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106759563.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:34 Heat of formation + Delta-G solvation = -49.810003 kcal Electronic energy + Delta-G solvation = -26292.779633 eV Core-core repulsion = 22463.774273 eV Total energy + Delta-G solvation = -3829.005360 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.40913 -40.69292 -39.44451 -38.00422 -36.64283 -34.89004 -34.33205 -33.31146 -31.73805 -30.62758 -28.03326 -27.38799 -26.28533 -24.62987 -22.95658 -22.71816 -21.81802 -21.32746 -20.18356 -19.79000 -19.13336 -18.16554 -17.96378 -17.26805 -16.77528 -16.60436 -16.58272 -16.10351 -15.96127 -15.67500 -15.27061 -15.16674 -14.80261 -14.63509 -14.36047 -14.17120 -13.88934 -13.79928 -13.60876 -13.50832 -13.29313 -13.01893 -12.84090 -12.55474 -12.34101 -12.06924 -11.86443 -11.80595 -11.66132 -11.58236 -11.42468 -11.26026 -10.98657 -10.88871 -10.19435 -9.87498 -9.63318 -9.29116 -8.03612 -5.35748 -1.10696 0.13581 0.49103 0.88642 1.36242 1.38499 1.44292 1.63662 1.82773 2.06122 2.32996 2.46098 3.16027 3.28846 3.43434 3.52529 3.74814 3.81585 3.96791 4.01644 4.11168 4.21512 4.28217 4.40616 4.47853 4.57031 4.72953 4.76315 4.79619 4.82253 4.86035 4.99517 5.05737 5.10702 5.17406 5.23247 5.35208 5.50989 5.73042 5.76827 6.18903 6.20876 6.26981 6.80166 7.07672 7.09098 7.85037 8.00706 9.17792 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.023153 B = 0.002573 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.033204 B =10879.872106 C =11800.793243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 H 0.113 0.887 4 C 0.086 3.914 5 N -0.615 5.615 6 C 0.596 3.404 7 O -0.571 6.571 8 C -0.249 4.249 9 C -0.072 4.072 10 C -0.073 4.073 11 C -0.264 4.264 12 C 0.595 3.405 13 N -0.826 5.826 14 O -0.570 6.570 15 S 0.291 5.709 16 C 0.112 3.888 17 C -0.099 4.099 18 H 0.075 0.925 19 C 0.167 3.833 20 N -0.762 5.762 21 C -0.227 4.227 22 H 0.065 0.935 23 C -0.061 4.061 24 N -0.982 5.982 25 Si 0.945 3.055 26 H -0.283 1.283 27 H -0.295 1.295 28 H -0.257 1.257 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.156 0.844 35 H 0.162 0.838 36 H 0.414 0.586 37 H 0.421 0.579 38 H 0.057 0.943 39 H 0.086 0.914 40 H 0.038 0.962 41 H 0.039 0.961 42 H 0.362 0.638 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.074 0.685 -30.897 32.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.104 4.104 3 H 0.132 0.868 4 C -0.037 4.037 5 N -0.347 5.347 6 C 0.385 3.615 7 O -0.453 6.453 8 C -0.371 4.371 9 C -0.106 4.106 10 C -0.106 4.106 11 C -0.386 4.386 12 C 0.379 3.621 13 N -0.391 5.391 14 O -0.451 6.451 15 S 0.562 5.438 16 C -0.010 4.010 17 C -0.119 4.119 18 H 0.093 0.907 19 C 0.041 3.959 20 N -0.408 5.408 21 C -0.358 4.358 22 H 0.083 0.917 23 C -0.253 4.253 24 N -0.632 5.632 25 Si 0.774 3.226 26 H -0.210 1.210 27 H -0.222 1.222 28 H -0.182 1.182 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.123 0.877 33 H 0.114 0.886 34 H 0.173 0.827 35 H 0.179 0.821 36 H 0.245 0.755 37 H 0.255 0.745 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.195 0.805 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.049 1.292 -30.780 32.405 hybrid contribution 0.644 -2.504 0.769 2.697 sum -9.405 -1.212 -30.012 31.474 Atomic orbital electron populations 1.21885 0.92505 1.02101 1.03583 1.22062 0.97622 1.00127 0.90555 0.86847 1.22770 0.96417 0.86928 0.97557 1.48707 1.53105 1.14890 1.17949 1.17034 0.78768 0.80903 0.84766 1.90831 1.45182 1.41486 1.67769 1.24715 1.13611 1.00720 0.98032 1.20627 0.98341 0.98439 0.93151 1.20586 0.96755 0.97783 0.95437 1.25304 1.12448 1.00821 0.99999 1.17137 0.76647 0.83211 0.85139 1.43516 1.65581 1.09954 1.20008 1.90864 1.57160 1.49549 1.47531 1.83584 1.54885 1.08025 0.97356 1.22483 0.97871 0.99067 0.81624 1.22427 0.96525 0.97479 0.95461 0.90694 1.20798 0.97522 0.93068 0.84494 1.42822 1.80712 1.04847 1.12386 1.19052 1.33876 0.92240 0.90631 0.91739 1.25406 1.02138 1.01845 0.95892 1.69856 1.52820 1.36117 1.04457 0.85550 0.78462 0.81818 0.76797 1.20971 1.22194 1.18169 0.93251 0.92269 0.89280 0.87710 0.88562 0.82652 0.82052 0.75489 0.74536 0.92398 0.89541 0.94435 0.94336 0.80516 0.93400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.90 71.98 0.64 -1.15 16 2 C -0.08 -1.27 3.17 -9.90 -0.03 -1.30 16 3 H 0.11 1.38 7.85 -2.39 -0.02 1.36 16 4 C 0.09 1.15 5.05 86.53 0.44 1.59 16 5 N -0.61 -14.04 3.29 -814.25 -2.68 -16.72 16 6 C 0.60 15.98 7.86 86.59 0.68 16.66 16 7 O -0.57 -20.61 17.02 -4.12 -0.07 -20.68 16 8 C -0.25 -4.86 6.36 24.24 0.15 -4.71 16 9 C -0.07 -1.34 9.89 21.55 0.21 -1.13 16 10 C -0.07 -1.19 9.88 21.55 0.21 -0.98 16 11 C -0.26 -3.76 6.46 24.24 0.16 -3.60 16 12 C 0.59 8.85 8.07 86.59 0.70 9.55 16 13 N -0.83 -4.64 8.87 -176.08 -1.56 -6.21 16 14 O -0.57 -13.40 17.65 -4.11 -0.07 -13.47 16 15 S 0.29 2.95 18.08 -56.49 -1.02 1.92 16 16 C 0.11 3.07 6.46 86.61 0.56 3.63 16 17 C -0.10 -2.49 2.60 -9.70 -0.03 -2.51 16 18 H 0.07 2.07 7.86 -2.39 -0.02 2.05 16 19 C 0.17 5.51 5.58 86.38 0.48 6.00 16 20 N -0.76 -34.23 5.33 -343.46 -1.83 -36.06 16 21 C -0.23 -12.64 10.47 84.04 0.88 -11.76 16 22 H 0.06 3.87 8.06 -2.91 -0.02 3.85 16 23 C -0.06 -3.60 5.50 84.86 0.47 -3.14 16 24 N -0.98 -62.74 13.97 21.65 0.30 -62.44 16 25 Si 0.95 46.50 27.74 68.60 1.90 48.40 16 26 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 27 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 28 H -0.26 -11.59 6.52 99.48 0.65 -10.94 16 29 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.10 0.89 8.04 -2.39 -0.02 0.87 16 33 H 0.10 0.92 5.25 -10.25 -0.05 0.87 16 34 H 0.16 2.96 8.04 -2.91 -0.02 2.94 16 35 H 0.16 2.45 8.04 -2.91 -0.02 2.43 16 36 H 0.41 0.06 7.93 -92.70 -0.74 -0.67 16 37 H 0.42 1.17 8.93 -92.71 -0.83 0.35 16 38 H 0.06 1.95 7.81 -2.39 -0.02 1.93 16 39 H 0.09 2.30 7.95 -2.39 -0.02 2.29 16 40 H 0.04 1.22 8.00 -2.39 -0.02 1.20 16 41 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.36 16.14 5.53 -92.71 -0.51 15.62 16 43 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -82.18 369.12 -0.60 -82.78 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -1.10 Total: 15.34 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 5.53 Total: 7.14 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -5.77 Total: -121.43 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -0.14 Total: -34.15 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.90 Total: 48.40 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -1.02 Total: 1.92 kcal Total: -82.18 -0.60 -82.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106759563.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.970 kcal (2) G-P(sol) polarization free energy of solvation -82.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds