Wall clock time and date at job start Tue Mar 31 2020 20:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.28802 * 2 1 4 4 C 1.54007 * 110.32631 * 237.85853 * 2 1 3 5 5 N 1.47486 * 107.08154 * 242.41590 * 4 2 1 6 6 C 1.34773 * 127.03006 * 154.52271 * 5 4 2 7 7 O 1.21682 * 120.00280 * 185.50979 * 6 5 4 8 8 C 1.46735 * 120.00081 * 5.50449 * 6 5 4 9 9 C 1.34880 * 125.05664 * 186.23244 * 8 6 5 10 10 C 1.38931 * 113.65277 * 179.86743 * 9 8 6 11 11 C 1.47345 * 122.95993 * 180.18711 * 10 9 8 12 12 N 1.34773 * 119.99770 * 180.21843 * 11 10 9 13 13 O 1.21611 * 119.99949 * 0.22256 * 11 10 9 14 14 C 1.36661 * 114.07907 * 0.41191 * 10 9 8 15 15 S 1.70593 * 110.52963 * 359.77600 * 14 10 9 16 16 C 1.48114 * 105.93478 * 334.78204 * 5 4 2 17 17 C 1.54590 * 103.42308 * 39.02323 * 16 5 4 18 18 H 1.09001 * 110.57646 * 81.17029 * 17 16 5 19 19 C 1.53007 * 110.83630 * 204.44446 * 17 16 5 20 20 N 1.46502 * 109.47074 * 288.56628 * 19 17 16 21 21 C 1.36931 * 119.99583 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00764 * 359.97438 * 21 20 19 23 23 C 1.38817 * 119.99537 * 180.02562 * 21 20 19 24 24 N 1.31612 * 120.00007 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99728 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47358 * 59.99861 * 25 23 21 27 27 H 1.48504 * 109.46978 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47135 * 299.99396 * 25 23 21 29 29 H 1.08994 * 109.47171 * 180.68223 * 1 2 3 30 30 H 1.08991 * 109.47348 * 300.68582 * 1 2 3 31 31 H 1.09006 * 109.46404 * 60.68807 * 1 2 3 32 32 H 1.09001 * 109.90796 * 123.05709 * 4 2 1 33 33 H 1.08999 * 110.07212 * 1.86999 * 4 2 1 34 34 H 1.08003 * 123.17290 * 0.02732 * 9 8 6 35 35 H 0.97005 * 120.00546 * 0.02562 * 12 11 10 36 36 H 0.96996 * 119.99812 * 180.02562 * 12 11 10 37 37 H 1.08003 * 124.73291 * 179.79225 * 14 10 9 38 38 H 1.09000 * 110.65878 * 157.50909 * 16 5 4 39 39 H 1.09001 * 110.66246 * 280.62439 * 16 5 4 40 40 H 1.08998 * 109.46657 * 48.56562 * 19 17 16 41 41 H 1.08996 * 109.47065 * 168.56297 * 19 17 16 42 42 H 0.96996 * 119.99589 * 359.97438 * 20 19 17 43 43 H 0.97004 * 120.00174 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0650 -0.7683 -1.2228 5 7 2.8277 -1.9218 -0.7100 6 6 3.0613 -3.0874 -1.3450 7 8 3.6242 -3.9955 -0.7626 8 6 2.6369 -3.2615 -2.7388 9 6 2.7098 -4.4160 -3.4325 10 6 2.2393 -4.3140 -4.7357 11 6 2.2205 -5.4511 -5.6725 12 7 1.7544 -5.2838 -6.9260 13 8 2.6254 -6.5405 -5.3146 14 6 1.7998 -3.0648 -5.0736 15 16 1.9649 -1.9954 -3.7547 16 6 3.2788 -1.5398 0.6480 17 6 2.0671 -0.7735 1.2264 18 1 1.3174 -1.4698 1.6021 19 6 2.5094 0.1940 2.3260 20 7 2.9002 -0.5653 3.5164 21 6 3.3351 0.0925 4.6358 22 1 3.3905 1.1711 4.6411 23 6 3.7059 -0.6270 5.7636 24 7 3.6389 -1.9414 5.7570 25 14 4.2998 0.2704 7.2904 26 1 3.2304 1.1773 7.7791 27 1 4.6314 -0.7181 8.3480 28 1 5.5095 1.0652 6.9584 29 1 -0.3633 -1.0275 0.0122 30 1 -0.3633 0.5244 0.8837 31 1 -0.3632 0.5032 -0.8962 32 1 2.7182 -0.1228 -1.8101 33 1 1.2355 -1.1158 -1.8386 34 1 3.0952 -5.3338 -3.0134 35 1 1.4317 -4.4147 -7.2116 36 1 1.7417 -6.0324 -7.5426 37 1 1.4032 -2.7927 -6.0406 38 1 3.4934 -2.4259 1.2454 39 1 4.1523 -0.8899 0.5945 40 1 3.3583 0.7803 1.9742 41 1 1.6850 0.8619 2.5755 42 1 2.8508 -1.5340 3.5115 43 1 3.8983 -2.4443 6.5449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107043174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:38 Heat of formation + Delta-G solvation = -27.012326 kcal Electronic energy + Delta-G solvation = -26157.078871 eV Core-core repulsion = 22329.062093 eV Total energy + Delta-G solvation = -3828.016778 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.40122 -39.99746 -38.19750 -36.90805 -34.70920 -34.16270 -32.94198 -31.49839 -30.50776 -28.99440 -26.76984 -26.01451 -25.45852 -23.59444 -22.54249 -21.30174 -20.18352 -20.05381 -19.34044 -18.55061 -17.47899 -17.29782 -16.96304 -16.13710 -15.99553 -15.47969 -15.18662 -14.82310 -14.59891 -14.29551 -14.04212 -13.77722 -13.46674 -13.33121 -13.16259 -13.12138 -12.97759 -12.88600 -12.40036 -12.19217 -11.94457 -11.64189 -11.27790 -11.13291 -10.85406 -10.64525 -10.52757 -10.44190 -10.37047 -10.14802 -10.10037 -10.00484 -9.66703 -9.38995 -9.03359 -8.87449 -8.67973 -6.92659 -5.74559 -3.04443 -0.00428 0.98249 1.34887 1.37857 2.76158 2.84501 3.14531 3.15614 3.45216 3.49375 3.51086 4.20592 4.40193 4.42925 4.57782 4.59972 4.75002 4.79555 4.81300 5.15744 5.24660 5.35617 5.44024 5.45439 5.57175 5.60193 5.71372 5.72590 5.84483 5.90978 6.00146 6.08597 6.13410 6.14495 6.33235 6.37118 6.41501 6.68329 6.80531 6.86318 7.43722 7.69889 7.83859 8.03644 8.43316 9.54500 10.11325 10.45442 11.47857 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.023021 B = 0.002338 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.988500 B =11973.437087 C =12912.477290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 H 0.092 0.908 4 C 0.092 3.908 5 N -0.618 5.618 6 C 0.603 3.397 7 O -0.519 6.519 8 C -0.259 4.259 9 C -0.016 4.016 10 C -0.162 4.162 11 C 0.582 3.418 12 N -0.851 5.851 13 O -0.533 6.533 14 C -0.223 4.223 15 S 0.263 5.737 16 C 0.116 3.884 17 C -0.102 4.102 18 H 0.086 0.914 19 C 0.166 3.834 20 N -0.733 5.733 21 C -0.243 4.243 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.165 0.835 35 H 0.399 0.601 36 H 0.406 0.594 37 H 0.173 0.827 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.022 0.978 41 H 0.024 0.976 42 H 0.385 0.615 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.456 3.230 -29.148 30.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.110 0.890 4 C -0.032 4.032 5 N -0.352 5.352 6 C 0.390 3.610 7 O -0.396 6.396 8 C -0.379 4.379 9 C -0.047 4.047 10 C -0.180 4.180 11 C 0.366 3.634 12 N -0.415 5.415 13 O -0.410 6.410 14 C -0.363 4.363 15 S 0.532 5.468 16 C -0.005 4.005 17 C -0.122 4.122 18 H 0.104 0.896 19 C 0.038 3.962 20 N -0.377 5.377 21 C -0.374 4.374 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.579 5.579 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.182 0.818 35 H 0.228 0.772 36 H 0.237 0.763 37 H 0.191 0.809 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.040 0.960 41 H 0.042 0.958 42 H 0.218 0.782 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.097 3.681 -28.142 29.515 hybrid contribution 0.362 -1.175 -0.020 1.229 sum -7.736 2.507 -28.163 29.313 Atomic orbital electron populations 1.21860 0.93944 1.02149 1.02129 1.22058 0.96519 0.99704 0.93163 0.89002 1.22417 0.95515 0.87976 0.97315 1.48683 1.53546 1.14164 1.18757 1.16481 0.79419 0.81328 0.83738 1.90895 1.42744 1.39575 1.66352 1.24221 1.15122 0.98854 0.99679 1.20336 0.94391 0.98803 0.91177 1.19009 1.09000 0.93966 0.96032 1.17656 0.76660 0.87371 0.81720 1.43658 1.67648 1.16258 1.13928 1.90873 1.46803 1.26388 1.76943 1.26422 1.05060 0.98706 1.06081 1.83399 1.54556 1.10374 0.98421 1.22584 0.96984 1.00445 0.80479 1.22543 0.97112 0.97900 0.94657 0.89583 1.20619 0.96617 0.92669 0.86336 1.42363 1.79223 1.05981 1.10157 1.19143 1.36232 0.91215 0.90834 0.91227 1.24761 1.02295 0.95489 0.98334 1.69649 1.54092 1.04530 1.29619 0.86270 0.78594 0.78340 0.82961 1.21302 1.21701 1.21264 0.92538 0.91559 0.92620 0.90843 0.90657 0.81791 0.77204 0.76259 0.80926 0.88858 0.90283 0.96041 0.95827 0.78165 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.90 37.16 0.33 -1.00 16 2 C -0.09 -1.01 3.17 -89.24 -0.28 -1.29 16 3 H 0.09 0.88 7.85 -51.93 -0.41 0.48 16 4 C 0.09 0.91 5.04 -2.98 -0.02 0.90 16 5 N -0.62 -8.54 3.29 -171.50 -0.56 -9.11 16 6 C 0.60 9.34 7.85 -12.83 -0.10 9.24 16 7 O -0.52 -10.26 17.00 5.20 0.09 -10.17 16 8 C -0.26 -3.10 6.28 -37.34 -0.23 -3.33 16 9 C -0.02 -0.20 9.47 -40.52 -0.38 -0.58 16 10 C -0.16 -1.54 5.82 -106.51 -0.62 -2.16 16 11 C 0.58 5.80 8.06 -12.56 -0.10 5.70 16 12 N -0.85 -4.21 8.84 30.41 0.27 -3.94 16 13 O -0.53 -7.76 17.52 5.27 0.09 -7.67 16 14 C -0.22 -1.35 10.41 30.16 0.31 -1.04 16 15 S 0.26 1.85 18.76 -107.50 -2.02 -0.17 16 16 C 0.12 1.85 6.46 -2.32 -0.01 1.84 16 17 C -0.10 -1.54 2.61 -88.93 -0.23 -1.77 16 18 H 0.09 1.41 7.86 -51.93 -0.41 1.01 16 19 C 0.17 3.09 5.58 -4.04 -0.02 3.06 16 20 N -0.73 -18.12 5.52 -59.91 -0.33 -18.45 16 21 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -28.42 13.06 55.49 0.72 -27.70 16 25 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.59 8.03 -51.93 -0.42 0.17 16 33 H 0.08 0.62 5.24 -39.07 -0.20 0.42 16 34 H 0.16 2.29 7.96 -52.48 -0.42 1.87 16 35 H 0.40 0.66 7.29 -40.82 -0.30 0.37 16 36 H 0.41 1.54 8.93 -40.82 -0.36 1.18 16 37 H 0.17 0.34 6.99 -52.48 -0.37 -0.03 16 38 H 0.09 1.78 7.81 -51.93 -0.41 1.37 16 39 H 0.08 1.24 7.93 -51.93 -0.41 0.83 16 40 H 0.02 0.40 7.99 -51.93 -0.41 -0.01 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.38 10.17 7.67 -40.82 -0.31 9.86 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -36.89 370.24 -8.46 -45.35 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -5.67 Total: 6.63 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -1.61 Total: 2.23 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: 0.10 Total: -59.19 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: 0.18 Total: -17.84 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.02 Total: -0.17 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.89 -8.46 -45.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107043174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.333 kcal (2) G-P(sol) polarization free energy of solvation -36.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds