Wall clock time and date at job start Tue Mar 31 2020 20:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.28802 * 2 1 4 4 C 1.54007 * 110.32631 * 237.85853 * 2 1 3 5 5 N 1.47486 * 107.08154 * 242.41590 * 4 2 1 6 6 C 1.34773 * 127.03006 * 154.52271 * 5 4 2 7 7 O 1.21682 * 120.00280 * 185.50979 * 6 5 4 8 8 C 1.46735 * 120.00081 * 5.50449 * 6 5 4 9 9 C 1.34880 * 125.05664 * 186.23244 * 8 6 5 10 10 C 1.38931 * 113.65277 * 179.86743 * 9 8 6 11 11 C 1.47345 * 122.95993 * 180.18711 * 10 9 8 12 12 N 1.34773 * 119.99770 * 180.21843 * 11 10 9 13 13 O 1.21611 * 119.99949 * 0.22256 * 11 10 9 14 14 C 1.36661 * 114.07907 * 0.41191 * 10 9 8 15 15 S 1.70593 * 110.52963 * 359.77600 * 14 10 9 16 16 C 1.48114 * 105.93478 * 334.78204 * 5 4 2 17 17 C 1.54590 * 103.42308 * 39.02323 * 16 5 4 18 18 H 1.09001 * 110.57646 * 81.17029 * 17 16 5 19 19 C 1.53007 * 110.83630 * 204.44446 * 17 16 5 20 20 N 1.46502 * 109.47074 * 288.56628 * 19 17 16 21 21 C 1.36931 * 119.99583 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00764 * 359.97438 * 21 20 19 23 23 C 1.38817 * 119.99537 * 180.02562 * 21 20 19 24 24 N 1.31612 * 120.00007 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99728 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47358 * 59.99861 * 25 23 21 27 27 H 1.48504 * 109.46978 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47135 * 299.99396 * 25 23 21 29 29 H 1.08994 * 109.47171 * 180.68223 * 1 2 3 30 30 H 1.08991 * 109.47348 * 300.68582 * 1 2 3 31 31 H 1.09006 * 109.46404 * 60.68807 * 1 2 3 32 32 H 1.09001 * 109.90796 * 123.05709 * 4 2 1 33 33 H 1.08999 * 110.07212 * 1.86999 * 4 2 1 34 34 H 1.08003 * 123.17290 * 0.02732 * 9 8 6 35 35 H 0.97005 * 120.00546 * 0.02562 * 12 11 10 36 36 H 0.96996 * 119.99812 * 180.02562 * 12 11 10 37 37 H 1.08003 * 124.73291 * 179.79225 * 14 10 9 38 38 H 1.09000 * 110.65878 * 157.50909 * 16 5 4 39 39 H 1.09001 * 110.66246 * 280.62439 * 16 5 4 40 40 H 1.08998 * 109.46657 * 48.56562 * 19 17 16 41 41 H 1.08996 * 109.47065 * 168.56297 * 19 17 16 42 42 H 0.96996 * 119.99589 * 359.97438 * 20 19 17 43 43 H 0.97004 * 120.00174 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0650 -0.7683 -1.2228 5 7 2.8277 -1.9218 -0.7100 6 6 3.0613 -3.0874 -1.3450 7 8 3.6242 -3.9955 -0.7626 8 6 2.6369 -3.2615 -2.7388 9 6 2.7098 -4.4160 -3.4325 10 6 2.2393 -4.3140 -4.7357 11 6 2.2205 -5.4511 -5.6725 12 7 1.7544 -5.2838 -6.9260 13 8 2.6254 -6.5405 -5.3146 14 6 1.7998 -3.0648 -5.0736 15 16 1.9649 -1.9954 -3.7547 16 6 3.2788 -1.5398 0.6480 17 6 2.0671 -0.7735 1.2264 18 1 1.3174 -1.4698 1.6021 19 6 2.5094 0.1940 2.3260 20 7 2.9002 -0.5653 3.5164 21 6 3.3351 0.0925 4.6358 22 1 3.3905 1.1711 4.6411 23 6 3.7059 -0.6270 5.7636 24 7 3.6389 -1.9414 5.7570 25 14 4.2998 0.2704 7.2904 26 1 3.2304 1.1773 7.7791 27 1 4.6314 -0.7181 8.3480 28 1 5.5095 1.0652 6.9584 29 1 -0.3633 -1.0275 0.0122 30 1 -0.3633 0.5244 0.8837 31 1 -0.3632 0.5032 -0.8962 32 1 2.7182 -0.1228 -1.8101 33 1 1.2355 -1.1158 -1.8386 34 1 3.0952 -5.3338 -3.0134 35 1 1.4317 -4.4147 -7.2116 36 1 1.7417 -6.0324 -7.5426 37 1 1.4032 -2.7927 -6.0406 38 1 3.4934 -2.4259 1.2454 39 1 4.1523 -0.8899 0.5945 40 1 3.3583 0.7803 1.9742 41 1 1.6850 0.8619 2.5755 42 1 2.8508 -1.5340 3.5115 43 1 3.8983 -2.4443 6.5449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107043174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:37 Heat of formation + Delta-G solvation = -57.066039 kcal Electronic energy + Delta-G solvation = -26158.382098 eV Core-core repulsion = 22329.062093 eV Total energy + Delta-G solvation = -3829.320005 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.42388 -40.86111 -39.31958 -37.81643 -36.47583 -34.82664 -34.28417 -33.06585 -31.57475 -30.33116 -27.71180 -27.25088 -26.41115 -25.19689 -23.72422 -22.51916 -21.23777 -21.01711 -20.11511 -19.55790 -18.95035 -18.15396 -17.97002 -17.35964 -16.98111 -16.57171 -16.40929 -15.97938 -15.79346 -15.42361 -15.25037 -15.06449 -14.88791 -14.45038 -14.21350 -14.14146 -13.91824 -13.82162 -13.61063 -13.37528 -13.17515 -12.90555 -12.71146 -12.51511 -12.34650 -12.13127 -11.93865 -11.78704 -11.58910 -11.47401 -11.29486 -11.14340 -10.91409 -10.76249 -10.23954 -9.81078 -9.60300 -8.99058 -7.93468 -5.22993 -0.71893 0.27646 0.50897 0.67943 1.47190 1.50895 1.57003 1.68820 1.84142 2.30920 2.55455 2.57185 3.27424 3.40465 3.48079 3.66569 3.80187 3.91879 4.04222 4.09000 4.14203 4.19388 4.35130 4.46995 4.51786 4.57886 4.60013 4.77377 4.79892 4.86356 4.89232 4.95098 5.05332 5.09665 5.21209 5.27185 5.36828 5.50276 5.54780 5.84809 6.27570 6.33813 6.40900 6.88038 7.28142 7.33512 8.10685 8.31487 9.30091 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.023021 B = 0.002338 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.988500 B =11973.437087 C =12912.477290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 H 0.115 0.885 4 C 0.087 3.913 5 N -0.616 5.616 6 C 0.594 3.406 7 O -0.585 6.585 8 C -0.302 4.302 9 C -0.028 4.028 10 C -0.191 4.191 11 C 0.579 3.421 12 N -0.822 5.822 13 O -0.596 6.596 14 C -0.184 4.184 15 S 0.361 5.639 16 C 0.117 3.883 17 C -0.094 4.094 18 H 0.065 0.935 19 C 0.165 3.835 20 N -0.750 5.750 21 C -0.241 4.241 22 H 0.082 0.918 23 C -0.082 4.082 24 N -0.974 5.974 25 Si 0.976 3.024 26 H -0.274 1.274 27 H -0.300 1.300 28 H -0.276 1.276 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.124 0.876 35 H 0.420 0.580 36 H 0.414 0.586 37 H 0.229 0.771 38 H 0.045 0.955 39 H 0.082 0.918 40 H 0.033 0.967 41 H 0.035 0.965 42 H 0.370 0.630 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.484 7.614 -33.007 35.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 H 0.134 0.866 4 C -0.035 4.035 5 N -0.348 5.348 6 C 0.384 3.616 7 O -0.467 6.467 8 C -0.422 4.422 9 C -0.061 4.061 10 C -0.208 4.208 11 C 0.363 3.637 12 N -0.387 5.387 13 O -0.478 6.478 14 C -0.324 4.324 15 S 0.630 5.370 16 C -0.005 4.005 17 C -0.114 4.114 18 H 0.083 0.917 19 C 0.039 3.961 20 N -0.392 5.392 21 C -0.373 4.373 22 H 0.100 0.900 23 C -0.274 4.274 24 N -0.625 5.625 25 Si 0.804 3.196 26 H -0.200 1.200 27 H -0.227 1.227 28 H -0.202 1.202 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.126 0.874 33 H 0.116 0.884 34 H 0.142 0.858 35 H 0.252 0.748 36 H 0.247 0.753 37 H 0.245 0.755 38 H 0.064 0.936 39 H 0.100 0.900 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.201 0.799 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.186 8.185 -32.097 34.654 hybrid contribution 0.923 -2.421 1.033 2.789 sum -9.263 5.765 -31.063 32.924 Atomic orbital electron populations 1.21876 0.92492 1.01943 1.03629 1.22082 0.97658 1.00084 0.90520 0.86642 1.22779 0.96471 0.86755 0.97527 1.48707 1.53395 1.14907 1.17756 1.17092 0.78534 0.80778 0.85157 1.90843 1.45813 1.41780 1.68290 1.23925 1.18070 1.01527 0.98670 1.20242 0.94984 0.97825 0.93000 1.18794 1.11546 0.95540 0.94872 1.17828 0.76257 0.86618 0.82966 1.43409 1.65472 1.17691 1.12099 1.90847 1.49962 1.28647 1.78313 1.27030 1.00852 0.96611 1.07867 1.82872 1.51461 1.06818 0.95893 1.22366 0.97853 0.98616 0.81660 1.22360 0.96104 0.97308 0.95609 0.91694 1.20816 0.97045 0.93040 0.85230 1.42658 1.79270 1.05699 1.11569 1.19637 1.34269 0.91895 0.91506 0.89986 1.25646 1.03744 0.96223 1.01774 1.69841 1.56305 1.06256 1.30082 0.85177 0.78473 0.77009 0.78899 1.20026 1.22701 1.20217 0.93599 0.92365 0.88893 0.87447 0.88387 0.85823 0.74785 0.75312 0.75484 0.93597 0.89990 0.94936 0.94701 0.79893 0.94204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.90 71.98 0.64 -1.49 16 2 C -0.08 -1.52 3.17 -9.90 -0.03 -1.55 16 3 H 0.12 1.65 7.85 -2.39 -0.02 1.63 16 4 C 0.09 1.42 5.04 86.53 0.44 1.85 16 5 N -0.62 -17.17 3.29 -814.73 -2.68 -19.85 16 6 C 0.59 19.60 7.85 86.46 0.68 20.28 16 7 O -0.59 -26.00 17.00 -4.29 -0.07 -26.08 16 8 C -0.30 -7.22 6.28 23.72 0.15 -7.07 16 9 C -0.03 -0.72 9.47 21.66 0.21 -0.52 16 10 C -0.19 -3.35 5.82 -21.08 -0.12 -3.47 16 11 C 0.58 11.13 8.06 86.64 0.70 11.83 16 12 N -0.82 -5.74 8.84 -175.95 -1.56 -7.30 16 13 O -0.60 -18.43 17.52 -4.07 -0.07 -18.50 16 14 C -0.18 -1.29 10.41 67.45 0.70 -0.59 16 15 S 0.36 3.35 18.76 -56.49 -1.06 2.29 16 16 C 0.12 3.95 6.46 86.61 0.56 4.51 16 17 C -0.09 -2.83 2.61 -9.70 -0.03 -2.85 16 18 H 0.06 2.23 7.86 -2.39 -0.02 2.21 16 19 C 0.17 6.07 5.58 86.38 0.48 6.55 16 20 N -0.75 -38.10 5.52 -343.45 -1.90 -39.99 16 21 C -0.24 -13.45 9.99 84.04 0.84 -12.61 16 22 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 23 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 24 N -0.97 -61.97 13.06 21.65 0.28 -61.69 16 25 Si 0.98 46.82 29.55 68.60 2.03 48.85 16 26 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 27 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 28 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 29 H 0.04 0.80 8.13 -2.39 -0.02 0.78 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.11 1.13 8.03 -2.39 -0.02 1.11 16 33 H 0.10 1.14 5.24 -10.56 -0.06 1.09 16 34 H 0.12 4.10 7.96 -2.91 -0.02 4.07 16 35 H 0.42 -0.71 7.29 -92.70 -0.68 -1.39 16 36 H 0.41 2.16 8.93 -92.71 -0.83 1.33 16 37 H 0.23 -0.97 6.99 -2.91 -0.02 -0.99 16 38 H 0.05 1.96 7.81 -2.39 -0.02 1.94 16 39 H 0.08 2.66 7.93 -2.39 -0.02 2.64 16 40 H 0.03 1.15 7.99 -2.39 -0.02 1.13 16 41 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.37 20.75 7.67 -92.71 -0.71 20.04 16 43 H 0.25 15.49 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -91.52 370.24 -0.53 -92.04 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -1.18 Total: 19.71 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 5.68 Total: 10.52 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -5.85 Total: -128.83 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -0.14 Total: -44.57 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -1.06 Total: 2.29 kcal Total: -91.52 -0.53 -92.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107043174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.978 kcal (2) G-P(sol) polarization free energy of solvation -91.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds