Wall clock time and date at job start Tue Mar 31 2020 20:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46859 * 2 1 4 4 N 1.46496 * 109.47271 * 119.99587 * 2 1 3 5 5 C 1.34778 * 120.00141 * 275.00500 * 4 2 1 6 6 O 1.21347 * 120.00143 * 359.97438 * 5 4 2 7 7 C 1.49452 * 119.99873 * 179.97438 * 5 4 2 8 8 O 1.21352 * 120.00368 * 353.61235 * 7 5 4 9 9 N 1.34782 * 119.99853 * 173.61290 * 7 5 4 10 10 C 1.46928 * 120.62748 * 351.27341 * 9 7 5 11 11 C 1.53194 * 108.88949 * 233.55808 * 10 9 7 12 12 C 1.53076 * 109.29729 * 305.57898 * 11 10 9 13 13 C 1.53040 * 109.65532 * 61.15721 * 12 11 10 14 14 H 1.08991 * 109.50418 * 58.64985 * 13 12 11 15 15 C 1.50700 * 109.49510 * 178.75142 * 13 12 11 16 16 H 1.07995 * 120.00544 * 34.99849 * 15 13 12 17 17 C 1.37883 * 119.99712 * 215.00205 * 15 13 12 18 18 N 1.31515 * 119.99984 * 174.90469 * 17 15 13 19 19 Si 1.86803 * 120.00037 * 354.90530 * 17 15 13 20 20 H 1.48497 * 109.46798 * 94.66334 * 19 17 15 21 21 H 1.48500 * 109.46944 * 214.66632 * 19 17 15 22 22 H 1.48499 * 109.47042 * 334.66587 * 19 17 15 23 23 C 1.46926 * 120.63165 * 171.29622 * 9 7 5 24 24 C 1.50694 * 109.47178 * 240.00028 * 2 1 3 25 25 C 1.35137 * 127.25193 * 99.99601 * 24 2 1 26 26 C 1.37808 * 114.76048 * 179.97438 * 25 24 2 27 27 N 1.30083 * 116.88319 * 0.02562 * 26 25 24 28 28 S 1.69598 * 107.14754 * 359.73119 * 27 26 25 29 29 H 1.09004 * 109.47078 * 300.00147 * 1 2 3 30 30 H 1.09001 * 109.47025 * 60.00079 * 1 2 3 31 31 H 1.08996 * 109.46856 * 180.02562 * 1 2 3 32 32 H 0.96998 * 120.00301 * 94.99645 * 4 2 1 33 33 H 1.08999 * 109.58763 * 353.41653 * 10 9 7 34 34 H 1.09002 * 109.58608 * 113.70289 * 10 9 7 35 35 H 1.08998 * 109.50040 * 65.39283 * 11 10 9 36 36 H 1.09001 * 109.49449 * 185.48666 * 11 10 9 37 37 H 1.08994 * 109.34804 * 301.13289 * 12 11 10 38 38 H 1.09004 * 109.44061 * 181.23460 * 12 11 10 39 39 H 0.97003 * 120.00101 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.58859 * 246.15909 * 23 9 7 41 41 H 1.09003 * 109.58551 * 6.44068 * 23 9 7 42 42 H 1.07997 * 122.61698 * 0.02817 * 25 24 2 43 43 H 1.08004 * 121.55834 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8588 1.1594 2.4115 7 6 2.6447 -0.7227 3.5775 8 8 2.8226 -1.9229 3.5552 9 7 2.8959 -0.0251 4.7031 10 6 2.8702 1.4439 4.6947 11 6 4.1924 1.9663 5.2656 12 6 4.4276 1.3467 6.6454 13 6 4.5213 -0.1755 6.5169 14 1 5.3350 -0.4341 5.8394 15 6 4.7834 -0.7794 7.8725 16 1 4.3465 -0.3359 8.7550 17 6 5.5811 -1.8983 7.9861 18 7 5.8919 -2.3663 9.1753 19 14 6.2205 -2.7494 6.4511 20 1 7.5784 -2.2401 6.1320 21 1 6.2839 -4.2141 6.6873 22 1 5.3073 -2.4704 5.3137 23 6 3.2012 -0.7192 5.9616 24 6 2.0324 -0.7104 -1.2304 25 6 2.4811 -0.1474 -2.3741 26 6 2.8813 -1.0445 -3.3406 27 7 2.7828 -2.3080 -3.0473 28 16 2.1621 -2.4088 -1.4722 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 2.2490 -1.6316 1.1527 33 1 2.7470 1.8014 3.6724 34 1 2.0419 1.7984 5.3082 35 1 5.0104 1.6898 4.6004 36 1 4.1465 3.0517 5.3547 37 1 3.5981 1.6052 7.3035 38 1 5.3570 1.7337 7.0632 39 1 6.4528 -3.1537 9.2552 40 1 2.4014 -0.5412 6.6804 41 1 3.2937 -1.7893 5.7756 42 1 2.5235 0.9219 -2.5189 43 1 3.2591 -0.7140 -4.2969 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119200846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:07 Heat of formation + Delta-G solvation = -17.737958 kcal Electronic energy + Delta-G solvation = -26976.690904 eV Core-core repulsion = 23149.076292 eV Total energy + Delta-G solvation = -3827.614612 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.91160 -39.40883 -38.65739 -37.17030 -36.24636 -33.34761 -32.28110 -31.87269 -30.53177 -29.99743 -26.42556 -25.66231 -25.18662 -23.73117 -21.99302 -21.87761 -21.04952 -19.91604 -19.07887 -18.36671 -17.50568 -16.96052 -16.65538 -16.18347 -15.96907 -15.59088 -14.91827 -14.85467 -14.33913 -14.17130 -14.05248 -13.87918 -13.63136 -13.56166 -13.23695 -13.10126 -12.62506 -12.59152 -12.46679 -12.24053 -12.22271 -11.75614 -11.44229 -11.15818 -10.88781 -10.78554 -10.66024 -10.50922 -10.12206 -10.10946 -9.72717 -9.62269 -9.57191 -9.24534 -9.17146 -8.85169 -8.66391 -8.16718 -6.14302 -4.15468 0.19523 0.98578 1.42471 1.46823 1.98567 2.37111 3.28066 3.29920 3.40194 3.50271 3.59714 3.82304 4.36152 4.40649 4.56728 4.68101 4.73039 4.76274 5.14197 5.16667 5.26211 5.33345 5.39201 5.42917 5.47356 5.65794 5.73325 5.83664 5.98245 6.11678 6.16054 6.18300 6.30706 6.43682 6.51818 6.61391 6.73534 6.79564 6.88213 7.23191 7.31093 7.55403 7.69280 7.73947 8.18161 8.45338 8.91028 9.48874 10.97936 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.016104 B = 0.003056 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.276869 B = 9161.343475 C =10219.330607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.219 3.781 3 H 0.115 0.885 4 N -0.705 5.705 5 C 0.517 3.483 6 O -0.508 6.508 7 C 0.495 3.505 8 O -0.527 6.527 9 N -0.569 5.569 10 C 0.072 3.928 11 C -0.137 4.137 12 C -0.106 4.106 13 C 0.008 3.992 14 H 0.035 0.965 15 C -0.514 4.514 16 H 0.076 0.924 17 C 0.076 3.924 18 N -0.894 5.894 19 Si 0.867 3.133 20 H -0.279 1.279 21 H -0.287 1.287 22 H -0.252 1.252 23 C 0.106 3.894 24 C -0.185 4.185 25 C -0.191 4.191 26 C 0.090 3.910 27 N -0.456 5.456 28 S 0.272 5.728 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.412 0.588 33 H 0.128 0.872 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.265 0.735 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.161 0.839 43 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.946 7.410 -23.608 26.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.112 3.888 3 H 0.133 0.867 4 N -0.360 5.360 5 C 0.300 3.700 6 O -0.385 6.385 7 C 0.276 3.724 8 O -0.405 6.405 9 N -0.301 5.301 10 C -0.050 4.050 11 C -0.175 4.175 12 C -0.144 4.144 13 C -0.012 4.012 14 H 0.053 0.947 15 C -0.552 4.552 16 H 0.094 0.906 17 C -0.127 4.127 18 N -0.531 5.531 19 Si 0.693 3.307 20 H -0.205 1.205 21 H -0.213 1.213 22 H -0.176 1.176 23 C -0.014 4.014 24 C -0.316 4.316 25 C -0.227 4.227 26 C -0.108 4.108 27 N -0.276 5.276 28 S 0.424 5.576 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.249 0.751 33 H 0.145 0.855 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.179 0.821 43 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -9.982 5.246 -23.281 25.868 hybrid contribution 0.695 0.889 -1.054 1.545 sum -9.287 6.135 -24.335 26.760 Atomic orbital electron populations 1.22238 0.92625 1.03357 1.03769 1.19289 0.94797 0.96397 0.78279 0.86687 1.46014 1.66360 1.15019 1.08588 1.20622 0.78056 0.86781 0.84543 1.90494 1.48660 1.15286 1.84027 1.19823 0.80831 0.87383 0.84363 1.90763 1.52104 1.14257 1.83354 1.48458 1.64305 1.08079 1.09278 1.22749 0.97945 0.78429 1.05874 1.22027 0.96962 0.99647 0.98908 1.21598 1.01322 0.97280 0.94174 1.19456 0.92239 0.92374 0.97081 0.94668 1.20886 1.30722 1.12119 0.91506 0.90601 1.25079 0.95255 0.96641 0.95732 1.69903 1.36727 1.23842 1.22653 0.86993 0.79858 0.79059 0.84763 1.20504 1.21286 1.17570 1.22743 0.99951 0.97967 0.80721 1.25624 1.04377 1.01243 1.00328 1.21322 1.05065 1.03492 0.92792 1.22886 0.98185 0.88096 1.01592 1.76842 1.21277 1.21578 1.07941 1.84319 1.57651 1.02907 1.12682 0.90441 0.90669 0.91682 0.75070 0.85511 0.91613 0.92432 0.91530 0.92720 0.92154 0.92507 0.91347 0.89663 0.82145 0.79612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.47 37.16 0.35 -0.82 16 2 C 0.22 1.86 3.07 -69.09 -0.21 1.65 16 3 H 0.12 0.96 7.58 -51.93 -0.39 0.57 16 4 N -0.70 -7.95 5.06 -55.37 -0.28 -8.23 16 5 C 0.52 7.28 7.71 -11.58 -0.09 7.19 16 6 O -0.51 -7.21 12.84 5.50 0.07 -7.14 16 7 C 0.49 8.76 7.73 -11.58 -0.09 8.67 16 8 O -0.53 -10.68 15.93 5.50 0.09 -10.60 16 9 N -0.57 -10.40 2.97 -173.27 -0.52 -10.91 16 10 C 0.07 1.11 5.98 -3.71 -0.02 1.09 16 11 C -0.14 -2.15 6.09 -26.59 -0.16 -2.31 16 12 C -0.11 -2.02 5.14 -26.67 -0.14 -2.15 16 13 C 0.01 0.19 1.79 -91.65 -0.16 0.02 16 14 H 0.04 0.84 5.60 -51.93 -0.29 0.55 16 15 C -0.51 -13.91 8.86 -34.44 -0.31 -14.21 16 16 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 17 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 18 N -0.89 -26.93 13.96 55.43 0.77 -26.15 16 19 Si 0.87 21.75 26.62 -169.99 -4.53 17.22 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.25 -6.30 5.99 56.52 0.34 -5.96 16 23 C 0.11 2.25 5.53 -3.71 -0.02 2.23 16 24 C -0.18 -1.50 5.51 -35.41 -0.19 -1.69 16 25 C -0.19 -1.26 10.17 -40.84 -0.42 -1.68 16 26 C 0.09 0.64 11.27 -18.45 -0.21 0.43 16 27 N -0.46 -4.53 12.09 28.86 0.35 -4.18 16 28 S 0.27 2.53 22.83 -107.50 -2.45 0.07 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.41 4.69 7.29 -40.82 -0.30 4.39 16 33 H 0.13 1.87 4.31 -54.82 -0.24 1.63 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.09 1.99 5.89 -51.93 -0.31 1.69 16 42 H 0.16 0.66 8.06 -52.49 -0.42 0.23 16 43 H 0.19 0.71 8.06 -52.48 -0.42 0.28 16 LS Contribution 362.72 15.07 5.47 5.47 Total: -1.00 -32.32 362.72 -8.59 -40.91 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.80 Total: 3.08 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -1.77 Total: 0.48 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 0.33 Total: -49.48 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: 0.16 Total: -17.74 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.53 Total: 17.22 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -2.45 Total: 0.07 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.32 -8.59 -40.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119200846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.167 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds