Wall clock time and date at job start Tue Mar 31 2020 20:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47146 * 2 1 4 4 N 1.46507 * 109.47085 * 239.99985 * 2 1 3 5 5 C 1.34775 * 120.00018 * 85.00229 * 4 2 1 6 6 O 1.21350 * 119.99870 * 359.97438 * 5 4 2 7 7 C 1.49446 * 120.00225 * 180.02562 * 5 4 2 8 8 O 1.21346 * 120.00021 * 6.39367 * 7 5 4 9 9 N 1.34779 * 120.00107 * 186.39968 * 7 5 4 10 10 C 1.46928 * 120.63071 * 7.08269 * 9 7 5 11 11 C 1.53183 * 108.77483 * 233.58645 * 10 9 7 12 12 C 1.53041 * 109.31624 * 305.36420 * 11 10 9 13 13 C 1.53045 * 109.53492 * 61.36556 * 12 11 10 14 14 H 1.08994 * 109.49852 * 58.61912 * 13 12 11 15 15 C 1.50695 * 109.49584 * 178.68642 * 13 12 11 16 16 H 1.08001 * 120.00242 * 359.97438 * 15 13 12 17 17 C 1.37875 * 120.00073 * 180.02562 * 15 13 12 18 18 N 1.31517 * 120.00039 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00220 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47250 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47503 * 119.99780 * 19 17 15 22 22 H 1.48504 * 109.47193 * 239.99686 * 19 17 15 23 23 C 1.46921 * 120.62716 * 186.80350 * 9 7 5 24 24 C 1.50706 * 109.47336 * 120.00300 * 2 1 3 25 25 C 1.35142 * 127.24419 * 259.98617 * 24 2 1 26 26 C 1.37806 * 114.75323 * 180.02562 * 25 24 2 27 27 N 1.30076 * 116.88836 * 359.97438 * 26 25 24 28 28 S 1.69609 * 107.14980 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.47305 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47302 * 299.99824 * 1 2 3 31 31 H 1.09000 * 109.47308 * 59.99807 * 1 2 3 32 32 H 0.97001 * 119.99979 * 264.99832 * 4 2 1 33 33 H 1.09003 * 109.58443 * 353.37902 * 10 9 7 34 34 H 1.09002 * 109.58335 * 113.65488 * 10 9 7 35 35 H 1.09003 * 109.49940 * 65.31794 * 11 10 9 36 36 H 1.09004 * 109.49765 * 185.41391 * 11 10 9 37 37 H 1.08995 * 109.46274 * 181.38430 * 12 11 10 38 38 H 1.08995 * 109.45888 * 301.36220 * 12 11 10 39 39 H 0.96996 * 119.99916 * 179.97438 * 18 17 15 40 40 H 1.09007 * 109.58689 * 246.19539 * 23 9 7 41 41 H 1.08991 * 109.59393 * 6.62582 * 23 9 7 42 42 H 1.07998 * 122.61930 * 0.02562 * 25 24 2 43 43 H 1.08009 * 121.55528 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8580 1.1590 -2.4118 7 6 2.6446 -0.7229 -3.5776 8 8 2.8223 -1.9231 -3.5552 9 7 2.8962 -0.0253 -4.7030 10 6 2.8357 1.4427 -4.7031 11 6 1.8915 1.8972 -5.8204 12 6 2.3472 1.2869 -7.1478 13 6 2.2878 -0.2397 -7.0563 14 1 1.2699 -0.5508 -6.8217 15 6 2.7059 -0.8391 -8.3742 16 1 2.9857 -0.1960 -9.1955 17 6 2.7302 -2.2086 -8.5319 18 7 2.3890 -2.9918 -7.5320 19 14 3.2477 -2.9517 -10.1657 20 1 3.5797 -1.8644 -11.1211 21 1 4.4399 -3.8135 -9.9622 22 1 2.1345 -3.7681 -10.7130 23 6 3.2421 -0.7182 -5.9515 24 6 2.0323 -0.7105 1.2305 25 6 2.4814 -0.1474 2.3740 26 6 2.8816 -1.0445 3.3405 27 7 2.7828 -2.3080 3.0474 28 16 2.1540 -2.4091 1.4754 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 2.2490 -1.6318 -1.1527 33 1 2.4597 1.7930 -3.7418 34 1 3.8321 1.8494 -4.8758 35 1 0.8773 1.5660 -5.5969 36 1 1.9117 2.9846 -5.8940 37 1 1.6915 1.6284 -7.9487 38 1 3.3703 1.5983 -7.3584 39 1 2.4058 -3.9553 -7.6430 40 1 4.2706 -0.4840 -6.2266 41 1 3.1343 -1.7941 -5.8144 42 1 2.5233 0.9219 2.5190 43 1 3.2588 -0.7140 4.2970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119200847.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:09 Heat of formation + Delta-G solvation = -14.874274 kcal Electronic energy + Delta-G solvation = -26949.323661 eV Core-core repulsion = 23121.833228 eV Total energy + Delta-G solvation = -3827.490433 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.72275 -39.28920 -38.42040 -36.93469 -36.09832 -33.31743 -32.17558 -31.72337 -29.91212 -29.73862 -26.24874 -25.55338 -25.01219 -23.56933 -21.91708 -21.77007 -20.95236 -19.87477 -18.92605 -18.19320 -17.37780 -16.62397 -16.32443 -15.88975 -15.74540 -15.30612 -14.81838 -14.68141 -14.57612 -14.00282 -13.96356 -13.78693 -13.49523 -13.35482 -13.15470 -12.76571 -12.62864 -12.43288 -12.14753 -12.10029 -11.80504 -11.47656 -11.31979 -11.01143 -10.80751 -10.71104 -10.47547 -10.30868 -10.10473 -10.01982 -9.91907 -9.49642 -9.23647 -9.13992 -9.09687 -8.57976 -8.45019 -7.86402 -6.03873 -4.11790 0.27318 1.06704 1.50620 1.67386 2.06393 2.55890 3.28452 3.37023 3.40184 3.54953 3.84182 3.92324 4.40429 4.57787 4.66870 4.76414 4.82504 4.86744 5.24421 5.27001 5.35398 5.41730 5.51111 5.61541 5.66314 5.80500 5.87880 5.99681 6.18678 6.22492 6.36610 6.53579 6.57367 6.70850 6.82704 6.96079 6.97332 7.10863 7.14117 7.56179 7.78537 7.87379 7.92882 8.10995 8.32438 8.51961 8.92446 9.53951 11.01889 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.018960 B = 0.002732 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.463436 B =10246.785484 C =11292.672391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.218 3.782 3 H 0.115 0.885 4 N -0.705 5.705 5 C 0.519 3.481 6 O -0.509 6.509 7 C 0.494 3.506 8 O -0.522 6.522 9 N -0.565 5.565 10 C 0.050 3.950 11 C -0.127 4.127 12 C -0.114 4.114 13 C 0.041 3.959 14 H 0.030 0.970 15 C -0.519 4.519 16 H 0.060 0.940 17 C 0.062 3.938 18 N -0.882 5.882 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.284 1.284 23 C 0.108 3.892 24 C -0.183 4.183 25 C -0.193 4.193 26 C 0.089 3.911 27 N -0.458 5.458 28 S 0.275 5.725 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.412 0.588 33 H 0.143 0.857 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.263 0.737 40 H 0.049 0.951 41 H 0.123 0.877 42 H 0.160 0.840 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.520 7.971 20.268 21.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.112 3.888 3 H 0.133 0.867 4 N -0.359 5.359 5 C 0.302 3.698 6 O -0.386 6.386 7 C 0.275 3.725 8 O -0.399 6.399 9 N -0.297 5.297 10 C -0.072 4.072 11 C -0.165 4.165 12 C -0.151 4.151 13 C 0.022 3.978 14 H 0.048 0.952 15 C -0.557 4.557 16 H 0.078 0.922 17 C -0.141 4.141 18 N -0.520 5.520 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.210 1.210 23 C -0.011 4.011 24 C -0.314 4.314 25 C -0.229 4.229 26 C -0.108 4.108 27 N -0.279 5.279 28 S 0.428 5.572 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.250 0.750 33 H 0.159 0.841 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.141 0.859 42 H 0.178 0.822 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -1.665 5.754 20.096 20.970 hybrid contribution 0.561 1.023 -0.536 1.284 sum -1.105 6.776 19.560 20.730 Atomic orbital electron populations 1.22244 0.92663 1.03417 1.03749 1.19288 0.94808 0.96367 0.78365 0.86740 1.46031 1.66352 1.15019 1.08538 1.20855 0.77592 0.86720 0.84639 1.90312 1.49462 1.15622 1.83186 1.19663 0.81191 0.87388 0.84258 1.90772 1.51999 1.13886 1.83224 1.48455 1.63730 1.07708 1.09809 1.23077 0.99928 0.79440 1.04745 1.21851 0.99280 0.99189 0.96198 1.21671 0.99881 0.98747 0.94844 1.19054 0.95724 0.89480 0.93556 0.95193 1.21132 1.46111 0.91423 0.97043 0.92191 1.25062 0.94944 0.97390 0.96688 1.69881 1.47319 1.04217 1.30579 0.86517 0.78276 0.79203 0.83905 1.19773 1.20944 1.20995 1.22601 0.97940 1.00832 0.79753 1.25651 1.04163 1.01252 1.00334 1.21314 1.05308 1.03448 0.92783 1.22866 0.98295 0.88129 1.01526 1.76826 1.21247 1.21566 1.08216 1.84363 1.57327 1.02890 1.12664 0.91650 0.90767 0.90360 0.75038 0.84081 0.92660 0.92313 0.92263 0.93050 0.93233 0.92672 0.93289 0.85919 0.82201 0.79706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.47 37.15 0.35 -1.03 16 2 C 0.22 2.07 3.07 -69.08 -0.21 1.85 16 3 H 0.11 1.05 7.58 -51.93 -0.39 0.65 16 4 N -0.70 -8.77 5.06 -55.36 -0.28 -9.05 16 5 C 0.52 8.07 7.74 -11.59 -0.09 7.98 16 6 O -0.51 -7.94 12.76 5.50 0.07 -7.87 16 7 C 0.49 9.71 7.74 -11.59 -0.09 9.63 16 8 O -0.52 -11.66 15.94 5.50 0.09 -11.57 16 9 N -0.57 -11.53 2.97 -173.02 -0.51 -12.04 16 10 C 0.05 0.86 6.27 -3.71 -0.02 0.83 16 11 C -0.13 -2.20 6.08 -26.62 -0.16 -2.36 16 12 C -0.11 -2.31 5.10 -26.69 -0.14 -2.44 16 13 C 0.04 1.01 2.26 -91.42 -0.21 0.80 16 14 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 15 C -0.52 -13.92 8.56 -34.44 -0.29 -14.21 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 17 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 18 N -0.88 -25.22 11.41 55.43 0.63 -24.59 16 19 Si 0.89 21.05 29.54 -169.99 -5.02 16.02 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 23 C 0.11 2.60 5.41 -3.49 -0.02 2.58 16 24 C -0.18 -1.60 5.50 -35.41 -0.19 -1.80 16 25 C -0.19 -1.37 10.17 -40.84 -0.42 -1.78 16 26 C 0.09 0.67 11.27 -18.45 -0.21 0.46 16 27 N -0.46 -4.74 12.09 28.86 0.35 -4.39 16 28 S 0.28 2.73 22.84 -107.50 -2.46 0.27 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.41 5.17 7.30 -40.82 -0.30 4.87 16 33 H 0.14 2.31 3.78 -56.75 -0.21 2.10 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.05 1.17 8.14 -51.92 -0.42 0.74 16 41 H 0.12 3.38 5.20 -51.93 -0.27 3.11 16 42 H 0.16 0.73 8.06 -52.49 -0.42 0.30 16 43 H 0.19 0.76 8.06 -52.48 -0.42 0.34 16 LS Contribution 365.33 15.07 5.51 5.51 Total: -1.00 -31.03 365.33 -9.21 -40.24 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.79 Total: 5.36 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -1.79 Total: 2.10 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: 0.19 Total: -50.06 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: 0.16 Total: -19.44 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -2.46 Total: 0.27 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.03 -9.21 -40.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119200847.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.365 kcal (2) G-P(sol) polarization free energy of solvation -31.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds