Wall clock time and date at job start Tue Mar 31 2020 20:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47146 * 2 1 4 4 N 1.46507 * 109.47085 * 239.99985 * 2 1 3 5 5 C 1.34775 * 120.00018 * 85.00229 * 4 2 1 6 6 O 1.21350 * 119.99870 * 359.97438 * 5 4 2 7 7 C 1.49446 * 120.00225 * 180.02562 * 5 4 2 8 8 O 1.21346 * 120.00021 * 6.39367 * 7 5 4 9 9 N 1.34779 * 120.00107 * 186.39968 * 7 5 4 10 10 C 1.46928 * 120.63071 * 7.08269 * 9 7 5 11 11 C 1.53183 * 108.77483 * 233.58645 * 10 9 7 12 12 C 1.53041 * 109.31624 * 305.36420 * 11 10 9 13 13 C 1.53045 * 109.53492 * 61.36556 * 12 11 10 14 14 H 1.08994 * 109.49852 * 58.61912 * 13 12 11 15 15 C 1.50695 * 109.49584 * 178.68642 * 13 12 11 16 16 H 1.08001 * 120.00242 * 359.97438 * 15 13 12 17 17 C 1.37875 * 120.00073 * 180.02562 * 15 13 12 18 18 N 1.31517 * 120.00039 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00220 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47250 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47503 * 119.99780 * 19 17 15 22 22 H 1.48504 * 109.47193 * 239.99686 * 19 17 15 23 23 C 1.46921 * 120.62716 * 186.80350 * 9 7 5 24 24 C 1.50706 * 109.47336 * 120.00300 * 2 1 3 25 25 C 1.35142 * 127.24419 * 259.98617 * 24 2 1 26 26 C 1.37806 * 114.75323 * 180.02562 * 25 24 2 27 27 N 1.30076 * 116.88836 * 359.97438 * 26 25 24 28 28 S 1.69609 * 107.14980 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.47305 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47302 * 299.99824 * 1 2 3 31 31 H 1.09000 * 109.47308 * 59.99807 * 1 2 3 32 32 H 0.97001 * 119.99979 * 264.99832 * 4 2 1 33 33 H 1.09003 * 109.58443 * 353.37902 * 10 9 7 34 34 H 1.09002 * 109.58335 * 113.65488 * 10 9 7 35 35 H 1.09003 * 109.49940 * 65.31794 * 11 10 9 36 36 H 1.09004 * 109.49765 * 185.41391 * 11 10 9 37 37 H 1.08995 * 109.46274 * 181.38430 * 12 11 10 38 38 H 1.08995 * 109.45888 * 301.36220 * 12 11 10 39 39 H 0.96996 * 119.99916 * 179.97438 * 18 17 15 40 40 H 1.09007 * 109.58689 * 246.19539 * 23 9 7 41 41 H 1.08991 * 109.59393 * 6.62582 * 23 9 7 42 42 H 1.07998 * 122.61930 * 0.02562 * 25 24 2 43 43 H 1.08009 * 121.55528 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8580 1.1590 -2.4118 7 6 2.6446 -0.7229 -3.5776 8 8 2.8223 -1.9231 -3.5552 9 7 2.8962 -0.0253 -4.7030 10 6 2.8357 1.4427 -4.7031 11 6 1.8915 1.8972 -5.8204 12 6 2.3472 1.2869 -7.1478 13 6 2.2878 -0.2397 -7.0563 14 1 1.2699 -0.5508 -6.8217 15 6 2.7059 -0.8391 -8.3742 16 1 2.9857 -0.1960 -9.1955 17 6 2.7302 -2.2086 -8.5319 18 7 2.3890 -2.9918 -7.5320 19 14 3.2477 -2.9517 -10.1657 20 1 3.5797 -1.8644 -11.1211 21 1 4.4399 -3.8135 -9.9622 22 1 2.1345 -3.7681 -10.7130 23 6 3.2421 -0.7182 -5.9515 24 6 2.0323 -0.7105 1.2305 25 6 2.4814 -0.1474 2.3740 26 6 2.8816 -1.0445 3.3405 27 7 2.7828 -2.3080 3.0474 28 16 2.1540 -2.4091 1.4754 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 2.2490 -1.6318 -1.1527 33 1 2.4597 1.7930 -3.7418 34 1 3.8321 1.8494 -4.8758 35 1 0.8773 1.5660 -5.5969 36 1 1.9117 2.9846 -5.8940 37 1 1.6915 1.6284 -7.9487 38 1 3.3703 1.5983 -7.3584 39 1 2.4058 -3.9553 -7.6430 40 1 4.2706 -0.4840 -6.2266 41 1 3.1343 -1.7941 -5.8144 42 1 2.5233 0.9219 2.5190 43 1 3.2588 -0.7140 4.2970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119200847.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:09 Heat of formation + Delta-G solvation = -35.527496 kcal Electronic energy + Delta-G solvation = -26950.219252 eV Core-core repulsion = 23121.833228 eV Total energy + Delta-G solvation = -3828.386024 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.06217 -40.21322 -39.59722 -38.54491 -37.14776 -35.20637 -33.51122 -33.01211 -31.55330 -30.62276 -27.73985 -26.89410 -26.31438 -24.76777 -23.53146 -22.91501 -21.95950 -21.04742 -20.31355 -19.20215 -18.73747 -18.24319 -17.77618 -17.14611 -16.75455 -16.67654 -16.49892 -15.77068 -15.64052 -15.47498 -15.21624 -14.84277 -14.66034 -14.59558 -14.44769 -14.10786 -13.98451 -13.72553 -13.48427 -13.20747 -12.93213 -12.89861 -12.80880 -12.46463 -12.30380 -12.16846 -12.06068 -11.70589 -11.62522 -11.46137 -11.15740 -10.97758 -10.82256 -10.55654 -10.43964 -10.02212 -9.77613 -9.55223 -8.12570 -6.28549 -0.37513 0.28866 0.38638 0.85191 1.24315 1.40734 1.42456 1.54028 1.56696 2.10390 2.40683 2.51488 3.15279 3.19781 3.25481 3.97491 4.11350 4.15718 4.19734 4.20877 4.26865 4.34209 4.52541 4.61721 4.73066 4.74716 4.77147 4.82822 4.91994 4.94649 5.06717 5.15101 5.19105 5.24948 5.27428 5.38273 5.50523 5.57339 5.61041 5.81599 5.87063 5.94171 6.28741 6.41464 6.64531 6.82675 6.95016 7.41345 8.91670 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.018960 B = 0.002732 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.463436 B =10246.785484 C =11292.672391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.220 3.780 3 H 0.129 0.871 4 N -0.693 5.693 5 C 0.532 3.468 6 O -0.506 6.506 7 C 0.484 3.516 8 O -0.559 6.559 9 N -0.573 5.573 10 C 0.049 3.951 11 C -0.120 4.120 12 C -0.108 4.108 13 C 0.039 3.961 14 H -0.010 1.010 15 C -0.534 4.534 16 H 0.062 0.938 17 C 0.011 3.989 18 N -0.915 5.915 19 Si 0.958 3.042 20 H -0.262 1.262 21 H -0.282 1.282 22 H -0.283 1.283 23 C 0.121 3.879 24 C -0.187 4.187 25 C -0.176 4.176 26 C 0.096 3.904 27 N -0.486 5.486 28 S 0.224 5.776 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.411 0.589 33 H 0.159 0.841 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.099 0.901 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.261 0.739 40 H 0.045 0.955 41 H 0.083 0.917 42 H 0.195 0.805 43 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.199 10.766 21.775 24.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.115 3.885 3 H 0.146 0.854 4 N -0.346 5.346 5 C 0.313 3.687 6 O -0.384 6.384 7 C 0.266 3.734 8 O -0.438 6.438 9 N -0.304 5.304 10 C -0.071 4.071 11 C -0.158 4.158 12 C -0.145 4.145 13 C 0.020 3.980 14 H 0.008 0.992 15 C -0.572 4.572 16 H 0.081 0.919 17 C -0.189 4.189 18 N -0.553 5.553 19 Si 0.784 3.216 20 H -0.186 1.186 21 H -0.208 1.208 22 H -0.209 1.209 23 C 0.000 4.000 24 C -0.317 4.317 25 C -0.211 4.211 26 C -0.101 4.101 27 N -0.306 5.306 28 S 0.376 5.624 29 H 0.078 0.922 30 H 0.118 0.882 31 H 0.084 0.916 32 H 0.248 0.752 33 H 0.175 0.825 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.101 0.899 42 H 0.212 0.788 43 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -1.358 8.577 21.631 23.309 hybrid contribution 0.459 0.185 -0.881 1.011 sum -0.899 8.762 20.750 22.542 Atomic orbital electron populations 1.22237 0.91829 1.03351 1.04391 1.19506 0.95406 0.96523 0.77082 0.85390 1.46053 1.65024 1.14979 1.08525 1.19855 0.78225 0.86468 0.84136 1.90283 1.49971 1.15127 1.82995 1.20450 0.80283 0.87212 0.85464 1.90746 1.53262 1.15688 1.84151 1.48472 1.63812 1.09122 1.08990 1.23346 1.00999 0.77170 1.05611 1.21818 0.98431 1.01331 0.94195 1.21569 1.00573 0.95460 0.96933 1.18987 0.93365 0.92683 0.92965 0.99176 1.21518 1.45721 0.91841 0.98134 0.91942 1.25874 0.95038 0.97986 0.99956 1.70057 1.48533 1.04183 1.32555 0.85499 0.77723 0.78445 0.79958 1.18596 1.20775 1.20853 1.22040 0.97467 0.98958 0.81571 1.25545 1.05370 1.00093 1.00731 1.21690 1.02945 1.05024 0.91484 1.23538 0.96539 0.87261 1.02799 1.76915 1.22476 1.23311 1.07928 1.84520 1.59055 1.04964 1.13864 0.92157 0.88151 0.91596 0.75160 0.82537 0.91036 0.93407 0.88270 0.92836 0.92459 0.92992 0.93713 0.89887 0.78790 0.76114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.47 71.98 0.68 -1.74 16 2 C 0.22 3.70 3.07 44.24 0.14 3.83 16 3 H 0.13 1.89 7.58 -2.39 -0.02 1.87 16 4 N -0.69 -16.76 5.06 -447.42 -2.26 -19.02 16 5 C 0.53 16.16 7.74 87.27 0.68 16.84 16 6 O -0.51 -14.76 12.76 -3.25 -0.04 -14.80 16 7 C 0.48 19.46 7.74 87.27 0.68 20.14 16 8 O -0.56 -26.30 15.94 -3.23 -0.05 -26.35 16 9 N -0.57 -23.68 2.97 -819.66 -2.43 -26.11 16 10 C 0.05 1.60 6.27 86.36 0.54 2.14 16 11 C -0.12 -3.91 6.08 30.67 0.19 -3.73 16 12 C -0.11 -4.29 5.10 30.62 0.16 -4.13 16 13 C 0.04 1.99 2.26 -11.31 -0.03 1.96 16 14 H -0.01 -0.58 8.14 -2.39 -0.02 -0.59 16 15 C -0.53 -29.26 8.56 25.60 0.22 -29.04 16 16 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 17 C 0.01 0.61 5.30 84.65 0.45 1.06 16 18 N -0.91 -54.58 11.41 21.45 0.24 -54.34 16 19 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 20 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 23 C 0.12 6.04 5.41 86.51 0.47 6.51 16 24 C -0.19 -2.88 5.50 24.97 0.14 -2.75 16 25 C -0.18 -1.86 10.17 21.45 0.22 -1.65 16 26 C 0.10 1.16 11.27 84.85 0.96 2.11 16 27 N -0.49 -9.49 12.09 -62.60 -0.76 -10.25 16 28 S 0.22 4.40 22.84 -56.49 -1.29 3.11 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.41 10.48 7.30 -92.71 -0.68 9.81 16 33 H 0.16 4.74 3.78 -78.75 -0.30 4.44 16 34 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.10 2.50 8.14 -2.38 -0.02 2.49 16 37 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 40 H 0.04 2.20 8.14 -2.38 -0.02 2.18 16 41 H 0.08 4.84 5.20 -2.39 -0.01 4.83 16 42 H 0.20 0.72 8.06 -2.91 -0.02 0.70 16 43 H 0.22 0.89 8.06 -2.91 -0.02 0.86 16 Total: -1.00 -70.98 365.33 0.99 -69.99 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.08 Total: 20.24 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 5.47 Total: 11.56 kcal Atomic # 7 Polarization: -104.51 SS G_CDS: -5.21 Total: -109.72 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -0.09 Total: -41.15 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 4.40 SS G_CDS: -1.29 Total: 3.11 kcal Total: -70.98 0.99 -69.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119200847.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.458 kcal (2) G-P(sol) polarization free energy of solvation -70.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds