Wall clock time and date at job start Tue Mar 31 2020 20:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47129 * 2 1 4 4 N 1.46502 * 109.47374 * 119.99717 * 2 1 3 5 5 C 1.34772 * 120.00197 * 275.00262 * 4 2 1 6 6 O 1.21356 * 119.99888 * 359.97438 * 5 4 2 7 7 C 1.49451 * 120.00460 * 179.97438 * 5 4 2 8 8 O 1.21356 * 119.99494 * 353.38309 * 7 5 4 9 9 N 1.34776 * 120.00381 * 173.38729 * 7 5 4 10 10 C 1.46926 * 120.62820 * 353.06567 * 9 7 5 11 11 C 1.53196 * 108.76922 * 126.41895 * 10 9 7 12 12 C 1.53036 * 109.34112 * 54.62209 * 11 10 9 13 13 C 1.53043 * 109.53413 * 298.67856 * 12 11 10 14 14 H 1.09001 * 109.50042 * 301.34757 * 13 12 11 15 15 C 1.50704 * 109.49240 * 181.28640 * 13 12 11 16 16 H 1.07995 * 120.00346 * 0.06542 * 15 13 12 17 17 C 1.37886 * 119.99595 * 180.34521 * 15 13 12 18 18 N 1.31514 * 119.99766 * 179.72269 * 17 15 13 19 19 Si 1.86795 * 120.00150 * 359.71814 * 17 15 13 20 20 H 1.48501 * 109.46845 * 90.00540 * 19 17 15 21 21 H 1.48503 * 109.47375 * 210.00216 * 19 17 15 22 22 H 1.48504 * 109.47401 * 330.00581 * 19 17 15 23 23 C 1.46931 * 120.62929 * 173.09499 * 9 7 5 24 24 C 1.50698 * 109.47314 * 240.00097 * 2 1 3 25 25 C 1.33632 * 126.03992 * 99.99379 * 24 2 1 26 26 N 1.31788 * 114.50204 * 180.02562 * 25 24 2 27 27 C 1.29024 * 117.12140 * 0.02562 * 26 25 24 28 28 S 1.70975 * 110.16706 * 359.71731 * 27 26 25 29 29 H 1.08994 * 109.46749 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46640 * 300.00387 * 1 2 3 31 31 H 1.08994 * 109.46895 * 60.00181 * 1 2 3 32 32 H 0.97001 * 119.99571 * 94.99870 * 4 2 1 33 33 H 1.09002 * 109.58673 * 246.20018 * 10 9 7 34 34 H 1.08996 * 109.58887 * 6.49406 * 10 9 7 35 35 H 1.09005 * 109.49633 * 174.58725 * 11 10 9 36 36 H 1.09002 * 109.49831 * 294.68233 * 11 10 9 37 37 H 1.09003 * 109.48723 * 178.64696 * 12 11 10 38 38 H 1.08994 * 109.43652 * 58.68064 * 12 11 10 39 39 H 0.97004 * 119.99910 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.58264 * 113.79778 * 23 9 7 41 41 H 1.08999 * 109.70240 * 353.44052 * 23 9 7 42 42 H 1.08001 * 122.75254 * 0.02562 * 25 24 2 43 43 H 1.08001 * 124.91291 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8589 1.1594 2.4115 7 6 2.6448 -0.7227 3.5776 8 8 2.8187 -1.9236 3.5564 9 7 2.9004 -0.0245 4.7017 10 6 2.8411 1.4435 4.7008 11 6 1.9007 1.8995 5.8209 12 6 2.3595 1.2898 7.1475 13 6 2.2994 -0.2367 7.0571 14 1 1.2807 -0.5477 6.8257 15 6 2.7212 -0.8355 8.3741 16 1 3.0030 -0.1920 9.1944 17 6 2.7530 -2.2052 8.5301 18 7 3.1263 -2.7278 9.6777 19 14 2.2656 -3.3182 7.1113 20 1 3.4651 -3.6327 6.2943 21 1 1.6870 -4.5771 7.6460 22 1 1.2574 -2.6299 6.2658 23 6 3.2443 -0.7170 5.9511 24 6 2.0324 -0.7104 -1.2304 25 6 2.4713 -0.1281 -2.3503 26 7 2.8581 -0.9693 -3.2882 27 6 2.7694 -2.2286 -3.0219 28 16 2.1505 -2.4553 -1.4443 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2491 -1.6317 1.1526 33 1 3.8379 1.8496 4.8727 34 1 2.4645 1.7935 3.7397 35 1 1.9219 2.9869 5.8937 36 1 0.8856 1.5689 5.6009 37 1 1.7062 1.6320 7.9502 38 1 3.3832 1.6013 7.3550 39 1 3.1483 -3.6913 9.7875 40 1 4.2740 -0.4870 6.2248 41 1 3.1334 -1.7931 5.8174 42 1 2.5062 0.9439 -2.4765 43 1 3.0506 -3.0242 -3.6960 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119870759.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:49 Heat of formation + Delta-G solvation = -24.532552 kcal Electronic energy + Delta-G solvation = -27172.435954 eV Core-core repulsion = 23344.526707 eV Total energy + Delta-G solvation = -3827.909247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.20497 -40.78041 -40.03739 -38.73873 -37.21893 -35.25813 -33.68200 -32.85710 -32.27323 -30.06765 -27.83247 -26.99332 -26.56871 -24.99682 -23.61791 -22.97504 -22.03692 -21.13683 -20.51349 -19.43345 -19.02313 -18.58920 -18.21130 -17.25727 -16.92519 -16.70599 -16.38045 -15.97763 -15.73716 -15.69952 -15.34696 -15.09883 -14.93122 -14.90681 -14.67182 -14.46558 -14.23183 -13.90179 -13.71199 -13.38990 -13.09849 -13.02408 -12.68146 -12.56081 -12.35067 -12.27706 -12.13026 -11.76715 -11.62558 -11.34687 -11.09535 -10.82546 -10.77467 -10.68465 -10.33406 -10.10443 -9.98461 -9.76502 -8.39683 -6.42520 -0.38373 0.16867 0.27039 0.69228 1.13551 1.23058 1.29649 1.36743 1.79130 1.97410 2.19900 2.37394 2.96258 3.11153 3.27141 3.57246 3.94875 4.00085 4.12449 4.13626 4.15897 4.33673 4.37911 4.42940 4.47367 4.52680 4.59086 4.72963 4.75841 4.86988 4.92595 5.05830 5.09954 5.17048 5.17824 5.26841 5.35456 5.48859 5.57399 5.63394 5.79203 6.20135 6.24021 6.53586 6.64532 6.66458 6.76896 7.22801 8.76409 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.018117 B = 0.003101 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.167005 B = 9025.753951 C =10110.288256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.223 3.777 3 H 0.122 0.878 4 N -0.690 5.690 5 C 0.530 3.470 6 O -0.504 6.504 7 C 0.487 3.513 8 O -0.561 6.561 9 N -0.573 5.573 10 C 0.049 3.951 11 C -0.121 4.121 12 C -0.100 4.100 13 C 0.005 3.995 14 H 0.017 0.983 15 C -0.513 4.513 16 H 0.051 0.949 17 C 0.027 3.973 18 N -0.937 5.937 19 Si 0.935 3.065 20 H -0.274 1.274 21 H -0.291 1.291 22 H -0.266 1.266 23 C 0.104 3.896 24 C -0.247 4.247 25 C 0.050 3.950 26 N -0.498 5.498 27 C 0.030 3.970 28 S 0.139 5.861 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.412 0.588 33 H 0.077 0.923 34 H 0.162 0.838 35 H 0.103 0.897 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.268 0.732 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.196 0.804 43 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.732 6.336 -27.749 28.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.118 3.882 3 H 0.140 0.860 4 N -0.343 5.343 5 C 0.311 3.689 6 O -0.381 6.381 7 C 0.269 3.731 8 O -0.441 6.441 9 N -0.304 5.304 10 C -0.070 4.070 11 C -0.159 4.159 12 C -0.138 4.138 13 C -0.014 4.014 14 H 0.035 0.965 15 C -0.551 4.551 16 H 0.069 0.931 17 C -0.172 4.172 18 N -0.577 5.577 19 Si 0.763 3.237 20 H -0.200 1.200 21 H -0.218 1.218 22 H -0.191 1.191 23 C -0.017 4.017 24 C -0.369 4.369 25 C -0.102 4.102 26 N -0.212 5.212 27 C -0.267 4.267 28 S 0.392 5.608 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.249 0.751 33 H 0.095 0.905 34 H 0.178 0.822 35 H 0.121 0.879 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.213 0.787 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -3.810 5.659 -27.585 28.416 hybrid contribution 0.227 -0.817 0.095 0.853 sum -3.583 4.842 -27.491 28.143 Atomic orbital electron populations 1.22223 0.92104 1.03260 1.04057 1.19457 0.95207 0.96316 0.77218 0.85991 1.46071 1.64815 1.14947 1.08457 1.19732 0.78500 0.86525 0.84101 1.90306 1.49851 1.15045 1.82901 1.20529 0.79849 0.87185 0.85503 1.90731 1.53513 1.15616 1.84268 1.48398 1.64011 1.09590 1.08400 1.23438 1.01552 0.76196 1.05857 1.21858 0.98731 1.01749 0.93586 1.21427 1.01192 0.93739 0.97422 1.19422 0.94253 0.95779 0.91977 0.96498 1.21275 1.44540 0.91742 0.97551 0.93123 1.25676 0.94664 0.99623 0.97234 1.69990 1.49259 1.12568 1.25834 0.86090 0.79449 0.78650 0.79461 1.20038 1.21764 1.19095 1.22361 1.00323 0.96297 0.82750 1.26027 1.12317 0.96761 1.01775 1.22074 0.98137 1.02211 0.87812 1.66435 1.19049 1.02491 1.33202 1.29027 1.01440 0.97398 0.98866 1.84338 1.58325 1.03903 1.14253 0.92012 0.91747 0.88699 0.75109 0.90496 0.82202 0.87893 0.92643 0.92389 0.92220 0.92263 0.90953 0.92684 0.78726 0.75413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.47 71.98 0.68 -1.48 16 2 C 0.22 3.43 3.03 44.25 0.13 3.56 16 3 H 0.12 1.74 7.57 -2.38 -0.02 1.73 16 4 N -0.69 -14.63 5.06 -447.42 -2.26 -16.90 16 5 C 0.53 14.32 7.74 87.27 0.68 15.00 16 6 O -0.50 -13.26 12.76 -3.26 -0.04 -13.30 16 7 C 0.49 17.30 7.74 87.27 0.68 17.98 16 8 O -0.56 -23.16 15.95 -3.26 -0.05 -23.21 16 9 N -0.57 -21.05 2.97 -820.47 -2.44 -23.49 16 10 C 0.05 1.42 6.27 86.36 0.54 1.96 16 11 C -0.12 -3.52 6.08 30.67 0.19 -3.34 16 12 C -0.10 -3.72 5.11 30.62 0.16 -3.57 16 13 C 0.01 0.25 1.84 -11.46 -0.02 0.22 16 14 H 0.02 0.84 7.21 -2.39 -0.02 0.82 16 15 C -0.51 -28.89 9.15 25.60 0.23 -28.66 16 16 H 0.05 3.08 7.99 -2.91 -0.02 3.06 16 17 C 0.03 1.58 5.45 84.66 0.46 2.04 16 18 N -0.94 -58.35 13.96 21.45 0.30 -58.05 16 19 Si 0.93 48.17 24.32 68.60 1.67 49.84 16 20 H -0.27 -14.10 6.91 99.48 0.69 -13.41 16 21 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 22 H -0.27 -13.53 6.54 99.48 0.65 -12.88 16 23 C 0.10 4.64 5.09 86.36 0.44 5.08 16 24 C -0.25 -3.52 5.51 24.64 0.14 -3.38 16 25 C 0.05 0.70 11.24 83.65 0.94 1.64 16 26 N -0.50 -8.08 10.54 -203.75 -2.15 -10.23 16 27 C 0.03 0.35 12.23 130.66 1.60 1.95 16 28 S 0.14 1.81 22.27 -56.49 -1.26 0.55 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.41 8.86 7.23 -92.71 -0.67 8.19 16 33 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.16 4.27 3.78 -78.75 -0.30 3.97 16 35 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 36 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 40 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 41 H 0.06 2.72 2.36 -2.39 -0.01 2.71 16 42 H 0.20 1.88 8.06 -2.91 -0.02 1.86 16 43 H 0.23 1.16 8.06 -2.91 -0.02 1.14 16 Total: -1.00 -72.03 358.17 0.63 -71.41 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 0.02 Total: 14.36 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: 6.84 Total: 9.01 kcal Atomic # 7 Polarization: -102.11 SS G_CDS: -6.55 Total: -108.66 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -0.09 Total: -36.51 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 1.67 Total: 49.84 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -1.26 Total: 0.55 kcal Total: -72.03 0.63 -71.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119870759.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.874 kcal (2) G-P(sol) polarization free energy of solvation -72.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds