Wall clock time and date at job start Tue Mar 31 2020 20:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47350 * 2 1 4 4 N 1.46499 * 109.47196 * 120.00971 * 2 1 3 5 5 C 1.34775 * 119.99505 * 274.99755 * 4 2 1 6 6 O 1.21352 * 120.00141 * 359.97438 * 5 4 2 7 7 C 1.49448 * 119.99800 * 180.02562 * 5 4 2 8 8 O 1.21344 * 120.00308 * 353.23338 * 7 5 4 9 9 N 1.34784 * 120.00133 * 173.23049 * 7 5 4 10 10 C 1.46929 * 120.62828 * 351.35143 * 9 7 5 11 11 C 1.53191 * 108.89438 * 233.55930 * 10 9 7 12 12 C 1.53070 * 109.29330 * 305.58156 * 11 10 9 13 13 C 1.53040 * 109.66092 * 61.15257 * 12 11 10 14 14 H 1.09000 * 109.49788 * 58.65045 * 13 12 11 15 15 C 1.50699 * 109.49627 * 178.74544 * 13 12 11 16 16 H 1.07993 * 120.00318 * 359.84311 * 15 13 12 17 17 C 1.37881 * 120.00047 * 179.83697 * 15 13 12 18 18 N 1.31523 * 119.99840 * 0.02562 * 17 15 13 19 19 Si 1.86793 * 120.00310 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47153 * 90.00370 * 19 17 15 21 21 H 1.48502 * 109.47304 * 210.00411 * 19 17 15 22 22 H 1.48497 * 109.47209 * 329.99863 * 19 17 15 23 23 C 1.46924 * 120.63092 * 171.37996 * 9 7 5 24 24 C 1.50704 * 109.46854 * 240.00524 * 2 1 3 25 25 C 1.33641 * 126.03518 * 99.72087 * 24 2 1 26 26 N 1.31789 * 114.49978 * 179.78852 * 25 24 2 27 27 C 1.29029 * 117.12036 * 0.51628 * 26 25 24 28 28 S 1.70979 * 110.16972 * 359.71573 * 27 26 25 29 29 H 1.08996 * 109.47096 * 59.99403 * 1 2 3 30 30 H 1.09002 * 109.46967 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47121 * 299.99047 * 1 2 3 32 32 H 0.96995 * 120.00359 * 95.00277 * 4 2 1 33 33 H 1.09001 * 109.58364 * 353.42154 * 10 9 7 34 34 H 1.08998 * 109.58185 * 113.69820 * 10 9 7 35 35 H 1.09001 * 109.49476 * 65.38778 * 11 10 9 36 36 H 1.08999 * 109.49901 * 185.48778 * 11 10 9 37 37 H 1.09002 * 109.35068 * 301.12365 * 12 11 10 38 38 H 1.09002 * 109.44049 * 181.23616 * 12 11 10 39 39 H 0.96998 * 120.00395 * 179.97438 * 18 17 15 40 40 H 1.09006 * 109.57806 * 246.15416 * 23 9 7 41 41 H 1.09000 * 109.58866 * 6.43300 * 23 9 7 42 42 H 1.07997 * 122.74993 * 359.96473 * 25 24 2 43 43 H 1.08002 * 124.91359 * 179.68626 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6908 1.1960 5 6 2.1470 -0.0185 2.3570 6 8 1.8589 1.1590 2.4115 7 6 2.6458 -0.7230 3.5771 8 8 2.8179 -1.9240 3.5564 9 7 2.9044 -0.0244 4.7003 10 6 2.8840 1.4447 4.6895 11 6 4.2105 1.9634 5.2537 12 6 4.4494 1.3452 6.6334 13 6 4.5370 -0.1775 6.5073 14 1 5.3469 -0.4402 5.8267 15 6 4.8030 -0.7800 7.8628 16 1 4.9024 -0.1410 8.7277 17 6 4.9192 -2.1471 7.9988 18 7 4.7984 -2.9254 6.9454 19 14 5.2481 -2.8941 9.6790 20 1 3.9571 -3.1866 10.3519 21 1 6.0191 -4.1531 9.5187 22 1 6.0296 -1.9365 10.5020 23 6 3.2127 -0.7175 5.9586 24 6 2.0322 -0.7103 -1.2306 25 6 2.4663 -0.1280 -2.3524 26 7 2.8588 -0.9689 -3.2881 27 6 2.7704 -2.2283 -3.0218 28 16 2.1439 -2.4554 -1.4472 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 2.2491 -1.6319 1.1524 33 1 2.7575 1.8008 3.6671 34 1 2.0596 1.8031 5.3059 35 1 5.0246 1.6826 4.5854 36 1 4.1689 3.0490 5.3412 37 1 3.6238 1.6079 7.2948 38 1 5.3820 1.7296 7.0466 39 1 4.8805 -3.8871 7.0409 40 1 2.4166 -0.5351 6.6806 41 1 3.3005 -1.7881 5.7741 42 1 2.4958 0.9440 -2.4805 43 1 3.0510 -3.0239 -3.6962 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119870760.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:52 Heat of formation + Delta-G solvation = -12.294032 kcal Electronic energy + Delta-G solvation = -26966.105755 eV Core-core repulsion = 23138.727210 eV Total energy + Delta-G solvation = -3827.378545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.70048 -39.95190 -38.48875 -36.90171 -36.06322 -33.31636 -31.96619 -31.66838 -29.78915 -29.32482 -26.23196 -25.74213 -25.02086 -23.64685 -21.90758 -21.73678 -20.97036 -19.90262 -19.03693 -18.39814 -17.33043 -16.69837 -16.19244 -15.84435 -15.77390 -15.33166 -14.83372 -14.72471 -14.51455 -14.28526 -13.98130 -13.80252 -13.65565 -13.39517 -13.02025 -12.88132 -12.59696 -12.44570 -12.18668 -11.98462 -11.82991 -11.59994 -11.37093 -10.99223 -10.72351 -10.48817 -10.32967 -10.16855 -10.03593 -9.90489 -9.73329 -9.49189 -9.26001 -9.23993 -9.13048 -8.63954 -8.47010 -7.85568 -6.02868 -4.11520 0.30030 0.94636 1.36881 1.71033 2.39569 2.65980 3.29131 3.36518 3.39057 3.55634 3.86739 3.95510 4.24404 4.40526 4.63071 4.78476 4.89536 4.91352 5.14536 5.27070 5.33121 5.51812 5.58774 5.63399 5.74052 5.82246 5.87141 6.02827 6.20885 6.34063 6.46403 6.57077 6.68363 6.81878 6.96212 6.97377 7.11701 7.15392 7.31588 7.56512 7.78484 7.86752 7.93300 8.11647 8.33048 8.53049 8.92484 9.54103 11.02370 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.017439 B = 0.002787 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.253940 B =10043.956631 C =11010.893017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.221 3.779 3 H 0.113 0.887 4 N -0.704 5.704 5 C 0.515 3.485 6 O -0.513 6.513 7 C 0.493 3.507 8 O -0.519 6.519 9 N -0.568 5.568 10 C 0.071 3.929 11 C -0.134 4.134 12 C -0.113 4.113 13 C 0.041 3.959 14 H 0.030 0.970 15 C -0.520 4.520 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.881 5.881 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.108 3.892 24 C -0.235 4.235 25 C 0.048 3.952 26 N -0.470 5.470 27 C 0.019 3.981 28 S 0.143 5.857 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.411 0.589 33 H 0.125 0.875 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.264 0.736 40 H 0.049 0.951 41 H 0.124 0.876 42 H 0.179 0.821 43 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.997 4.438 -18.093 20.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.114 3.886 3 H 0.131 0.869 4 N -0.359 5.359 5 C 0.298 3.702 6 O -0.390 6.390 7 C 0.274 3.726 8 O -0.396 6.396 9 N -0.300 5.300 10 C -0.051 4.051 11 C -0.172 4.172 12 C -0.150 4.150 13 C 0.022 3.978 14 H 0.048 0.952 15 C -0.558 4.558 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.519 5.519 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.012 4.012 24 C -0.356 4.356 25 C -0.104 4.104 26 N -0.183 5.183 27 C -0.279 4.279 28 S 0.396 5.604 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.248 0.752 33 H 0.142 0.858 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.142 0.858 42 H 0.196 0.804 43 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -8.101 3.695 -18.047 20.124 hybrid contribution 0.374 -0.055 0.736 0.828 sum -7.727 3.640 -17.311 19.303 Atomic orbital electron populations 1.22236 0.93140 1.03067 1.03470 1.19266 0.94500 0.96275 0.78518 0.86909 1.46042 1.66338 1.14927 1.08602 1.20814 0.77897 0.86796 0.84714 1.90479 1.48923 1.15438 1.84150 1.19745 0.81142 0.87488 0.84209 1.90782 1.51783 1.13991 1.83022 1.48442 1.64155 1.07522 1.09859 1.22679 0.97527 0.79351 1.05517 1.21965 0.97183 0.99158 0.98872 1.21663 1.00382 0.98739 0.94260 1.18953 0.92896 0.89281 0.96656 0.95197 1.21087 1.49634 0.91693 0.93412 0.92254 1.25065 0.94905 0.97405 0.96706 1.69884 1.48981 1.04528 1.28465 0.86572 0.78314 0.78697 0.84307 1.20640 1.21191 1.19920 1.22504 0.97929 1.00996 0.79732 1.26170 1.11082 0.96488 1.01895 1.21770 0.99185 1.01316 0.88153 1.66370 1.17740 1.01668 1.32554 1.28488 1.03158 0.97210 0.99003 1.84282 1.58076 1.04176 1.13850 0.90889 0.91927 0.90715 0.75191 0.85771 0.92112 0.92448 0.92044 0.93166 0.93024 0.92639 0.93282 0.85793 0.80415 0.78206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.47 37.16 0.35 -1.03 16 2 C 0.22 2.19 3.03 -69.08 -0.21 1.98 16 3 H 0.11 1.11 7.57 -51.93 -0.39 0.72 16 4 N -0.70 -8.98 5.06 -55.37 -0.28 -9.26 16 5 C 0.51 8.15 7.71 -11.59 -0.09 8.06 16 6 O -0.51 -8.18 12.85 5.50 0.07 -8.11 16 7 C 0.49 9.76 7.73 -11.58 -0.09 9.67 16 8 O -0.52 -11.70 15.93 5.50 0.09 -11.61 16 9 N -0.57 -11.62 2.97 -173.28 -0.52 -12.14 16 10 C 0.07 1.24 5.98 -3.71 -0.02 1.22 16 11 C -0.13 -2.30 6.09 -26.60 -0.16 -2.46 16 12 C -0.11 -2.28 5.10 -26.67 -0.14 -2.42 16 13 C 0.04 1.02 2.26 -91.66 -0.21 0.81 16 14 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 15 C -0.52 -13.94 8.56 -34.44 -0.29 -14.24 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.69 5.30 -17.81 -0.09 1.60 16 18 N -0.88 -25.18 11.39 55.43 0.63 -24.55 16 19 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.11 2.58 5.41 -3.72 -0.02 2.56 16 24 C -0.23 -2.16 5.51 -35.92 -0.20 -2.36 16 25 C 0.05 0.44 11.24 -19.18 -0.22 0.22 16 26 N -0.47 -4.74 10.54 -15.75 -0.17 -4.90 16 27 C 0.02 0.15 12.23 51.59 0.63 0.78 16 28 S 0.14 1.20 22.29 -107.50 -2.40 -1.20 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.41 5.26 7.24 -40.82 -0.30 4.96 16 33 H 0.13 2.06 4.31 -54.78 -0.24 1.83 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.12 3.40 5.13 -51.93 -0.27 3.14 16 42 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.20 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 365.34 15.07 5.51 5.51 Total: -1.00 -31.14 365.34 -8.64 -39.79 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.81 Total: 6.10 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -0.76 Total: 4.39 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: -0.33 Total: -50.85 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: 0.16 Total: -19.72 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.40 Total: -1.20 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.14 -8.64 -39.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119870760.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.494 kcal (2) G-P(sol) polarization free energy of solvation -31.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds