Wall clock time and date at job start Tue Mar 31 2020 20:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47350 * 2 1 4 4 N 1.46499 * 109.47196 * 120.00971 * 2 1 3 5 5 C 1.34775 * 119.99505 * 274.99755 * 4 2 1 6 6 O 1.21352 * 120.00141 * 359.97438 * 5 4 2 7 7 C 1.49448 * 119.99800 * 180.02562 * 5 4 2 8 8 O 1.21344 * 120.00308 * 353.23338 * 7 5 4 9 9 N 1.34784 * 120.00133 * 173.23049 * 7 5 4 10 10 C 1.46929 * 120.62828 * 351.35143 * 9 7 5 11 11 C 1.53191 * 108.89438 * 233.55930 * 10 9 7 12 12 C 1.53070 * 109.29330 * 305.58156 * 11 10 9 13 13 C 1.53040 * 109.66092 * 61.15257 * 12 11 10 14 14 H 1.09000 * 109.49788 * 58.65045 * 13 12 11 15 15 C 1.50699 * 109.49627 * 178.74544 * 13 12 11 16 16 H 1.07993 * 120.00318 * 359.84311 * 15 13 12 17 17 C 1.37881 * 120.00047 * 179.83697 * 15 13 12 18 18 N 1.31523 * 119.99840 * 0.02562 * 17 15 13 19 19 Si 1.86793 * 120.00310 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47153 * 90.00370 * 19 17 15 21 21 H 1.48502 * 109.47304 * 210.00411 * 19 17 15 22 22 H 1.48497 * 109.47209 * 329.99863 * 19 17 15 23 23 C 1.46924 * 120.63092 * 171.37996 * 9 7 5 24 24 C 1.50704 * 109.46854 * 240.00524 * 2 1 3 25 25 C 1.33641 * 126.03518 * 99.72087 * 24 2 1 26 26 N 1.31789 * 114.49978 * 179.78852 * 25 24 2 27 27 C 1.29029 * 117.12036 * 0.51628 * 26 25 24 28 28 S 1.70979 * 110.16972 * 359.71573 * 27 26 25 29 29 H 1.08996 * 109.47096 * 59.99403 * 1 2 3 30 30 H 1.09002 * 109.46967 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47121 * 299.99047 * 1 2 3 32 32 H 0.96995 * 120.00359 * 95.00277 * 4 2 1 33 33 H 1.09001 * 109.58364 * 353.42154 * 10 9 7 34 34 H 1.08998 * 109.58185 * 113.69820 * 10 9 7 35 35 H 1.09001 * 109.49476 * 65.38778 * 11 10 9 36 36 H 1.08999 * 109.49901 * 185.48778 * 11 10 9 37 37 H 1.09002 * 109.35068 * 301.12365 * 12 11 10 38 38 H 1.09002 * 109.44049 * 181.23616 * 12 11 10 39 39 H 0.96998 * 120.00395 * 179.97438 * 18 17 15 40 40 H 1.09006 * 109.57806 * 246.15416 * 23 9 7 41 41 H 1.09000 * 109.58866 * 6.43300 * 23 9 7 42 42 H 1.07997 * 122.74993 * 359.96473 * 25 24 2 43 43 H 1.08002 * 124.91359 * 179.68626 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6908 1.1960 5 6 2.1470 -0.0185 2.3570 6 8 1.8589 1.1590 2.4115 7 6 2.6458 -0.7230 3.5771 8 8 2.8179 -1.9240 3.5564 9 7 2.9044 -0.0244 4.7003 10 6 2.8840 1.4447 4.6895 11 6 4.2105 1.9634 5.2537 12 6 4.4494 1.3452 6.6334 13 6 4.5370 -0.1775 6.5073 14 1 5.3469 -0.4402 5.8267 15 6 4.8030 -0.7800 7.8628 16 1 4.9024 -0.1410 8.7277 17 6 4.9192 -2.1471 7.9988 18 7 4.7984 -2.9254 6.9454 19 14 5.2481 -2.8941 9.6790 20 1 3.9571 -3.1866 10.3519 21 1 6.0191 -4.1531 9.5187 22 1 6.0296 -1.9365 10.5020 23 6 3.2127 -0.7175 5.9586 24 6 2.0322 -0.7103 -1.2306 25 6 2.4663 -0.1280 -2.3524 26 7 2.8588 -0.9689 -3.2881 27 6 2.7704 -2.2283 -3.0218 28 16 2.1439 -2.4554 -1.4472 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 2.2491 -1.6319 1.1524 33 1 2.7575 1.8008 3.6671 34 1 2.0596 1.8031 5.3059 35 1 5.0246 1.6826 4.5854 36 1 4.1689 3.0490 5.3412 37 1 3.6238 1.6079 7.2948 38 1 5.3820 1.7296 7.0466 39 1 4.8805 -3.8871 7.0409 40 1 2.4166 -0.5351 6.6806 41 1 3.3005 -1.7881 5.7741 42 1 2.4958 0.9440 -2.4805 43 1 3.0510 -3.0239 -3.6962 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119870760.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:51 Heat of formation + Delta-G solvation = -33.260459 kcal Electronic energy + Delta-G solvation = -26967.014928 eV Core-core repulsion = 23138.727210 eV Total energy + Delta-G solvation = -3828.287718 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.03543 -40.73164 -39.88453 -38.52863 -37.13803 -35.21060 -33.50880 -32.78766 -31.58627 -30.03862 -27.72599 -26.88894 -26.51402 -24.89281 -23.54570 -22.90397 -21.94005 -21.13950 -20.40549 -19.35641 -18.74131 -18.29406 -17.81504 -17.16329 -16.80004 -16.63819 -16.40323 -15.87641 -15.65170 -15.48805 -15.12457 -14.91768 -14.85577 -14.64713 -14.46034 -14.39095 -14.00680 -13.83987 -13.51227 -13.19951 -12.95626 -12.85939 -12.65949 -12.50970 -12.29871 -12.24953 -12.16017 -11.75110 -11.63755 -11.13820 -10.98506 -10.74170 -10.65951 -10.54530 -10.30424 -10.10047 -9.96518 -9.55307 -8.11053 -6.27831 -0.36355 0.27880 0.31941 0.71354 1.27032 1.42456 1.43035 1.53410 1.81844 2.09774 2.41435 2.52722 3.16458 3.24730 3.29934 3.59034 4.02919 4.11963 4.15554 4.17691 4.32413 4.35433 4.47740 4.55320 4.60673 4.72969 4.77781 4.81330 4.89964 5.06588 5.10952 5.14199 5.18348 5.23370 5.25366 5.33338 5.47813 5.57476 5.83157 5.88438 5.95146 6.29190 6.39742 6.63683 6.66209 6.83404 6.95423 7.41997 8.92558 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.017439 B = 0.002787 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.253940 B =10043.956631 C =11010.893017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.223 3.777 3 H 0.118 0.882 4 N -0.692 5.692 5 C 0.527 3.473 6 O -0.512 6.512 7 C 0.484 3.516 8 O -0.556 6.556 9 N -0.575 5.575 10 C 0.071 3.929 11 C -0.126 4.126 12 C -0.107 4.107 13 C 0.040 3.960 14 H -0.011 1.011 15 C -0.536 4.536 16 H 0.062 0.938 17 C 0.012 3.988 18 N -0.913 5.913 19 Si 0.958 3.042 20 H -0.274 1.274 21 H -0.287 1.287 22 H -0.265 1.265 23 C 0.121 3.879 24 C -0.247 4.247 25 C 0.048 3.952 26 N -0.498 5.498 27 C 0.028 3.972 28 S 0.141 5.859 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.411 0.589 33 H 0.140 0.860 34 H 0.075 0.925 35 H 0.047 0.953 36 H 0.101 0.899 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.261 0.739 40 H 0.046 0.954 41 H 0.085 0.915 42 H 0.195 0.805 43 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.655 5.931 -18.945 21.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.117 3.883 3 H 0.136 0.864 4 N -0.345 5.345 5 C 0.309 3.691 6 O -0.389 6.389 7 C 0.266 3.734 8 O -0.435 6.435 9 N -0.306 5.306 10 C -0.049 4.049 11 C -0.164 4.164 12 C -0.145 4.145 13 C 0.020 3.980 14 H 0.007 0.993 15 C -0.574 4.574 16 H 0.080 0.920 17 C -0.188 4.188 18 N -0.552 5.552 19 Si 0.784 3.216 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.190 1.190 23 C -0.001 4.001 24 C -0.369 4.369 25 C -0.104 4.104 26 N -0.211 5.211 27 C -0.268 4.268 28 S 0.394 5.606 29 H 0.113 0.887 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.248 0.752 33 H 0.156 0.844 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.120 0.880 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.104 0.896 42 H 0.212 0.788 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -8.773 5.224 -18.927 21.506 hybrid contribution 0.593 -0.564 0.909 1.223 sum -8.180 4.660 -18.018 20.329 Atomic orbital electron populations 1.22205 0.91927 1.03293 1.03986 1.19441 0.95349 0.96168 0.77327 0.86400 1.46064 1.65056 1.14885 1.08508 1.19873 0.78485 0.86540 0.84246 1.90462 1.49442 1.15017 1.84015 1.20498 0.80263 0.87299 0.85308 1.90754 1.53121 1.15768 1.83884 1.48462 1.64182 1.08918 1.09087 1.22919 0.98123 0.77128 1.06778 1.21938 0.96694 1.01308 0.96459 1.21559 1.00861 0.95483 0.96568 1.18888 0.91732 0.92538 0.94809 0.99295 1.21482 1.49314 0.92131 0.94488 0.91962 1.25874 0.94759 0.97988 1.00186 1.70063 1.50042 1.04480 1.30573 0.85551 0.78321 0.77744 0.80025 1.19975 1.21258 1.18953 1.21958 0.97518 0.99194 0.81399 1.26050 1.12309 0.96833 1.01708 1.22065 0.98281 1.02193 0.87848 1.66434 1.19005 1.02489 1.33213 1.29033 1.01470 0.97405 0.98937 1.84343 1.58124 1.03846 1.14317 0.88719 0.91886 0.91768 0.75237 0.84364 0.90692 0.93374 0.88019 0.92355 0.92812 0.92981 0.93572 0.89645 0.78779 0.75343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.47 71.98 0.68 -1.72 16 2 C 0.22 4.04 3.03 44.25 0.13 4.18 16 3 H 0.12 2.07 7.57 -2.39 -0.02 2.05 16 4 N -0.69 -17.10 5.06 -447.44 -2.26 -19.36 16 5 C 0.53 16.31 7.71 87.27 0.67 16.98 16 6 O -0.51 -15.40 12.85 -3.25 -0.04 -15.45 16 7 C 0.48 19.52 7.73 87.27 0.67 20.19 16 8 O -0.56 -26.18 15.93 -3.23 -0.05 -26.23 16 9 N -0.57 -23.80 2.97 -820.49 -2.44 -26.24 16 10 C 0.07 2.35 5.98 86.36 0.52 2.87 16 11 C -0.13 -4.10 6.09 30.68 0.19 -3.91 16 12 C -0.11 -4.25 5.10 30.63 0.16 -4.10 16 13 C 0.04 2.00 2.26 -11.47 -0.03 1.97 16 14 H -0.01 -0.65 8.14 -2.39 -0.02 -0.66 16 15 C -0.54 -29.29 8.56 25.60 0.22 -29.07 16 16 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 17 C 0.01 0.64 5.30 84.65 0.45 1.09 16 18 N -0.91 -54.25 11.39 21.45 0.24 -54.01 16 19 Si 0.96 43.68 29.54 68.60 2.03 45.70 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 23 C 0.12 5.99 5.41 86.36 0.47 6.45 16 24 C -0.25 -4.17 5.51 24.64 0.14 -4.04 16 25 C 0.05 0.80 11.24 83.66 0.94 1.74 16 26 N -0.50 -9.15 10.54 -203.74 -2.15 -11.30 16 27 C 0.03 0.40 12.23 130.65 1.60 2.00 16 28 S 0.14 2.18 22.29 -56.49 -1.26 0.92 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.41 10.43 7.24 -92.71 -0.67 9.76 16 33 H 0.14 4.27 4.31 -47.53 -0.21 4.07 16 34 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 40 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 41 H 0.09 4.95 5.13 -2.39 -0.01 4.94 16 42 H 0.20 2.34 8.06 -2.91 -0.02 2.32 16 43 H 0.23 1.61 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -69.51 365.34 1.05 -68.45 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.18 Total: 22.87 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 6.81 Total: 14.65 kcal Atomic # 7 Polarization: -104.30 SS G_CDS: -6.61 Total: -110.91 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -0.09 Total: -41.68 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -1.26 Total: 0.92 kcal Total: -69.51 1.05 -68.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119870760.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.194 kcal (2) G-P(sol) polarization free energy of solvation -69.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds