Wall clock time and date at job start Tue Mar 31 2020 20:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46808 * 2 1 4 4 N 1.46502 * 109.47079 * 240.00282 * 2 1 3 5 5 C 1.34782 * 120.00166 * 85.00040 * 4 2 1 6 6 O 1.21350 * 119.99528 * 359.97438 * 5 4 2 7 7 C 1.49446 * 120.00084 * 179.97438 * 5 4 2 8 8 O 1.21356 * 119.99803 * 353.37756 * 7 5 4 9 9 N 1.34768 * 120.00057 * 173.37736 * 7 5 4 10 10 C 1.46923 * 120.63140 * 353.06161 * 9 7 5 11 11 C 1.53197 * 108.77603 * 126.41596 * 10 9 7 12 12 C 1.53036 * 109.34037 * 54.62030 * 11 10 9 13 13 C 1.53043 * 109.53781 * 298.68543 * 12 11 10 14 14 H 1.09000 * 109.49772 * 301.34791 * 13 12 11 15 15 C 1.50699 * 109.49861 * 181.28187 * 13 12 11 16 16 H 1.08009 * 119.99826 * 0.06421 * 15 13 12 17 17 C 1.37874 * 120.00391 * 180.34183 * 15 13 12 18 18 N 1.31511 * 119.99935 * 359.72505 * 17 15 13 19 19 Si 1.86803 * 120.00371 * 179.72468 * 17 15 13 20 20 H 1.48502 * 109.47059 * 89.99815 * 19 17 15 21 21 H 1.48498 * 109.47106 * 209.99770 * 19 17 15 22 22 H 1.48506 * 109.46912 * 330.00086 * 19 17 15 23 23 C 1.46927 * 120.63303 * 173.08900 * 9 7 5 24 24 C 1.50695 * 109.46936 * 120.00026 * 2 1 3 25 25 C 1.33634 * 126.03705 * 259.71299 * 24 2 1 26 26 N 1.31783 * 114.50199 * 179.79105 * 25 24 2 27 27 C 1.29033 * 117.12028 * 0.52507 * 26 25 24 28 28 S 1.70973 * 110.16894 * 359.71087 * 27 26 25 29 29 H 1.08995 * 109.47045 * 299.99796 * 1 2 3 30 30 H 1.09000 * 109.47225 * 60.00009 * 1 2 3 31 31 H 1.08997 * 109.46876 * 179.97438 * 1 2 3 32 32 H 0.96996 * 120.00059 * 264.99663 * 4 2 1 33 33 H 1.08998 * 109.59171 * 246.19792 * 10 9 7 34 34 H 1.09003 * 109.58922 * 6.48999 * 10 9 7 35 35 H 1.08995 * 109.50150 * 174.58993 * 11 10 9 36 36 H 1.09009 * 109.49617 * 294.68452 * 11 10 9 37 37 H 1.08997 * 109.49188 * 178.64856 * 12 11 10 38 38 H 1.09001 * 109.43006 * 58.68768 * 12 11 10 39 39 H 0.97000 * 120.00590 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.59192 * 113.79627 * 23 9 7 41 41 H 1.08998 * 109.70190 * 353.44355 * 23 9 7 42 42 H 1.07997 * 122.75446 * 359.97438 * 25 24 2 43 43 H 1.08001 * 124.91084 * 179.67938 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3572 6 8 1.8580 1.1592 -2.4117 7 6 2.6458 -0.7225 -3.5773 8 8 3.0481 -1.8646 -3.4968 9 7 2.6487 -0.0893 -4.7670 10 6 2.0274 1.2342 -4.9122 11 6 3.0524 2.1959 -5.5217 12 6 3.5866 1.6056 -6.8287 13 6 4.2839 0.2739 -6.5415 14 1 5.0974 0.4343 -5.8341 15 6 4.8370 -0.2912 -7.8244 16 1 4.7055 0.2461 -8.7521 17 6 5.5058 -1.4968 -7.8149 18 7 5.6659 -2.1510 -6.6854 19 14 6.1847 -2.2009 -9.4064 20 1 7.5732 -1.7153 -9.6100 21 1 6.1851 -3.6840 -9.3310 22 1 5.3354 -1.7632 -10.5433 23 6 3.2728 -0.7096 -5.9436 24 6 2.0323 -0.7104 1.2304 25 6 2.4763 -0.1281 2.3483 26 7 2.8582 -0.9692 3.2881 27 6 2.7709 -2.2286 3.0213 28 16 2.1452 -2.4555 1.4464 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 2.2491 -1.6317 -1.1527 33 1 1.1602 1.1608 -5.5683 34 1 1.7158 1.6008 -3.9341 35 1 2.5760 3.1552 -5.7237 36 1 3.8773 2.3387 -4.8235 37 1 4.2983 2.2990 -7.2767 38 1 2.7580 1.4406 -7.5174 39 1 6.1367 -2.9991 -6.6786 40 1 2.5071 -0.9416 -6.6839 41 1 3.7847 -1.6254 -5.6482 42 1 2.5160 0.9440 2.4725 43 1 3.0527 -3.0242 3.6951 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119870762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:57 Heat of formation + Delta-G solvation = -8.760304 kcal Electronic energy + Delta-G solvation = -26990.869070 eV Core-core repulsion = 23163.643758 eV Total energy + Delta-G solvation = -3827.225311 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.72895 -39.95454 -38.48003 -36.92988 -36.07199 -33.31441 -31.95893 -31.67112 -29.76468 -29.33504 -26.24446 -25.74251 -25.02335 -23.64335 -21.88948 -21.74563 -20.99842 -19.94319 -18.99482 -18.38023 -17.40945 -16.68858 -16.19895 -15.80771 -15.61248 -15.47627 -14.84442 -14.73636 -14.56292 -14.28191 -14.01639 -13.79017 -13.71912 -13.38814 -13.14748 -12.78886 -12.62079 -12.44874 -12.12042 -11.98999 -11.79310 -11.59667 -11.39397 -10.99594 -10.72839 -10.47109 -10.29910 -10.09730 -10.04604 -9.91981 -9.70232 -9.50835 -9.28626 -9.23566 -9.13978 -8.56888 -8.44113 -7.86278 -6.03790 -4.11935 0.30194 0.94567 1.36643 1.69339 2.39484 2.65692 3.29138 3.36445 3.38909 3.56361 3.86967 3.95441 4.24381 4.40266 4.62734 4.77159 4.89510 4.90929 5.14591 5.26841 5.31200 5.50554 5.62620 5.66781 5.74284 5.82492 5.86654 6.01699 6.22673 6.37142 6.55000 6.58416 6.71519 6.83500 6.97144 6.98559 7.12213 7.14958 7.31898 7.56773 7.79537 7.89334 7.93181 8.11876 8.32626 8.52626 8.92087 9.53720 11.01818 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.017217 B = 0.002817 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.909959 B = 9937.943403 C =11060.260049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.220 3.780 3 H 0.114 0.886 4 N -0.703 5.703 5 C 0.517 3.483 6 O -0.510 6.510 7 C 0.494 3.506 8 O -0.523 6.523 9 N -0.565 5.565 10 C 0.050 3.950 11 C -0.127 4.127 12 C -0.114 4.114 13 C 0.041 3.959 14 H 0.029 0.971 15 C -0.519 4.519 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.883 5.883 19 Si 0.894 3.106 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.108 3.892 24 C -0.234 4.234 25 C 0.048 3.952 26 N -0.470 5.470 27 C 0.019 3.981 28 S 0.142 5.858 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.411 0.589 33 H 0.055 0.945 34 H 0.143 0.857 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.264 0.736 40 H 0.048 0.952 41 H 0.124 0.876 42 H 0.179 0.821 43 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.936 2.278 17.418 20.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.114 3.886 3 H 0.131 0.869 4 N -0.358 5.358 5 C 0.300 3.700 6 O -0.386 6.386 7 C 0.275 3.725 8 O -0.400 6.400 9 N -0.297 5.297 10 C -0.072 4.072 11 C -0.166 4.166 12 C -0.151 4.151 13 C 0.022 3.978 14 H 0.047 0.953 15 C -0.557 4.557 16 H 0.078 0.922 17 C -0.141 4.141 18 N -0.520 5.520 19 Si 0.722 3.278 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.012 4.012 24 C -0.356 4.356 25 C -0.104 4.104 26 N -0.183 5.183 27 C -0.278 4.278 28 S 0.395 5.605 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.248 0.752 33 H 0.073 0.927 34 H 0.159 0.841 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.141 0.859 42 H 0.196 0.804 43 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -10.850 1.587 17.425 20.589 hybrid contribution 0.664 -0.028 -0.723 0.982 sum -10.186 1.559 16.702 19.625 Atomic orbital electron populations 1.22233 0.93099 1.03036 1.03507 1.19281 0.94487 0.96361 0.78503 0.86854 1.46056 1.66167 1.14878 1.08682 1.20851 0.77271 0.86892 0.84946 1.90310 1.49581 1.15815 1.82942 1.19683 0.81760 0.86735 0.84309 1.90768 1.47398 1.16765 1.85088 1.48445 1.53176 1.18956 1.09103 1.23079 0.95199 0.82572 1.06315 1.21854 0.98643 0.97457 0.98604 1.21668 0.99431 0.98963 0.95064 1.18973 0.92884 0.89614 0.96373 0.95268 1.21095 1.35497 1.05512 0.93639 0.92233 1.25059 0.95728 0.96984 0.96296 1.69865 1.41451 1.15571 1.25156 0.86566 0.79379 0.78213 0.83692 1.20660 1.21153 1.19885 1.22504 0.94975 1.00876 0.82808 1.26158 1.11043 0.96455 1.01967 1.21774 0.99108 1.01330 0.88154 1.66368 1.17799 1.01661 1.32491 1.28485 1.03207 0.97217 0.98898 1.84240 1.58056 1.04221 1.14000 0.90843 0.90708 0.91951 0.75185 0.92670 0.84051 0.92246 0.92337 0.93046 0.93233 0.92621 0.93318 0.85854 0.80399 0.78205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.47 37.16 0.35 -0.98 16 2 C 0.22 2.17 3.03 -69.08 -0.21 1.96 16 3 H 0.11 1.13 7.57 -51.93 -0.39 0.74 16 4 N -0.70 -8.90 5.06 -55.36 -0.28 -9.18 16 5 C 0.52 8.19 7.74 -11.58 -0.09 8.10 16 6 O -0.51 -8.13 12.77 5.50 0.07 -8.06 16 7 C 0.49 9.79 7.74 -11.59 -0.09 9.70 16 8 O -0.52 -11.73 15.95 5.49 0.09 -11.64 16 9 N -0.57 -11.61 2.97 -173.27 -0.51 -12.12 16 10 C 0.05 0.87 6.27 -3.71 -0.02 0.85 16 11 C -0.13 -2.24 6.08 -26.61 -0.16 -2.40 16 12 C -0.11 -2.32 5.11 -26.69 -0.14 -2.46 16 13 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 14 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 15 C -0.52 -13.98 8.57 -34.44 -0.30 -14.27 16 16 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 17 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 18 N -0.88 -25.30 11.38 55.43 0.63 -24.67 16 19 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 C 0.11 2.60 5.38 -3.71 -0.02 2.58 16 24 C -0.23 -2.17 5.51 -35.92 -0.20 -2.36 16 25 C 0.05 0.45 11.24 -19.19 -0.22 0.23 16 26 N -0.47 -4.77 10.54 -15.75 -0.17 -4.94 16 27 C 0.02 0.15 12.23 51.59 0.63 0.79 16 28 S 0.14 1.18 22.28 -107.50 -2.40 -1.22 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.41 5.19 7.23 -40.82 -0.30 4.90 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.14 2.35 3.78 -56.75 -0.21 2.13 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 1.08 8.14 -51.92 -0.42 0.65 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.12 3.41 5.17 -51.93 -0.27 3.14 16 42 H 0.18 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.20 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 365.07 15.07 5.50 5.50 Total: -1.00 -31.28 365.07 -8.63 -39.91 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.79 Total: 6.25 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -0.76 Total: 4.14 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.33 Total: -50.91 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: 0.16 Total: -19.70 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.40 Total: -1.22 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.28 -8.63 -39.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119870762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.146 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds