Wall clock time and date at job start Tue Mar 31 2020 20:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46808 * 2 1 4 4 N 1.46502 * 109.47079 * 240.00282 * 2 1 3 5 5 C 1.34782 * 120.00166 * 85.00040 * 4 2 1 6 6 O 1.21350 * 119.99528 * 359.97438 * 5 4 2 7 7 C 1.49446 * 120.00084 * 179.97438 * 5 4 2 8 8 O 1.21356 * 119.99803 * 353.37756 * 7 5 4 9 9 N 1.34768 * 120.00057 * 173.37736 * 7 5 4 10 10 C 1.46923 * 120.63140 * 353.06161 * 9 7 5 11 11 C 1.53197 * 108.77603 * 126.41596 * 10 9 7 12 12 C 1.53036 * 109.34037 * 54.62030 * 11 10 9 13 13 C 1.53043 * 109.53781 * 298.68543 * 12 11 10 14 14 H 1.09000 * 109.49772 * 301.34791 * 13 12 11 15 15 C 1.50699 * 109.49861 * 181.28187 * 13 12 11 16 16 H 1.08009 * 119.99826 * 0.06421 * 15 13 12 17 17 C 1.37874 * 120.00391 * 180.34183 * 15 13 12 18 18 N 1.31511 * 119.99935 * 359.72505 * 17 15 13 19 19 Si 1.86803 * 120.00371 * 179.72468 * 17 15 13 20 20 H 1.48502 * 109.47059 * 89.99815 * 19 17 15 21 21 H 1.48498 * 109.47106 * 209.99770 * 19 17 15 22 22 H 1.48506 * 109.46912 * 330.00086 * 19 17 15 23 23 C 1.46927 * 120.63303 * 173.08900 * 9 7 5 24 24 C 1.50695 * 109.46936 * 120.00026 * 2 1 3 25 25 C 1.33634 * 126.03705 * 259.71299 * 24 2 1 26 26 N 1.31783 * 114.50199 * 179.79105 * 25 24 2 27 27 C 1.29033 * 117.12028 * 0.52507 * 26 25 24 28 28 S 1.70973 * 110.16894 * 359.71087 * 27 26 25 29 29 H 1.08995 * 109.47045 * 299.99796 * 1 2 3 30 30 H 1.09000 * 109.47225 * 60.00009 * 1 2 3 31 31 H 1.08997 * 109.46876 * 179.97438 * 1 2 3 32 32 H 0.96996 * 120.00059 * 264.99663 * 4 2 1 33 33 H 1.08998 * 109.59171 * 246.19792 * 10 9 7 34 34 H 1.09003 * 109.58922 * 6.48999 * 10 9 7 35 35 H 1.08995 * 109.50150 * 174.58993 * 11 10 9 36 36 H 1.09009 * 109.49617 * 294.68452 * 11 10 9 37 37 H 1.08997 * 109.49188 * 178.64856 * 12 11 10 38 38 H 1.09001 * 109.43006 * 58.68768 * 12 11 10 39 39 H 0.97000 * 120.00590 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.59192 * 113.79627 * 23 9 7 41 41 H 1.08998 * 109.70190 * 353.44355 * 23 9 7 42 42 H 1.07997 * 122.75446 * 359.97438 * 25 24 2 43 43 H 1.08001 * 124.91084 * 179.67938 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3572 6 8 1.8580 1.1592 -2.4117 7 6 2.6458 -0.7225 -3.5773 8 8 3.0481 -1.8646 -3.4968 9 7 2.6487 -0.0893 -4.7670 10 6 2.0274 1.2342 -4.9122 11 6 3.0524 2.1959 -5.5217 12 6 3.5866 1.6056 -6.8287 13 6 4.2839 0.2739 -6.5415 14 1 5.0974 0.4343 -5.8341 15 6 4.8370 -0.2912 -7.8244 16 1 4.7055 0.2461 -8.7521 17 6 5.5058 -1.4968 -7.8149 18 7 5.6659 -2.1510 -6.6854 19 14 6.1847 -2.2009 -9.4064 20 1 7.5732 -1.7153 -9.6100 21 1 6.1851 -3.6840 -9.3310 22 1 5.3354 -1.7632 -10.5433 23 6 3.2728 -0.7096 -5.9436 24 6 2.0323 -0.7104 1.2304 25 6 2.4763 -0.1281 2.3483 26 7 2.8582 -0.9692 3.2881 27 6 2.7709 -2.2286 3.0213 28 16 2.1452 -2.4555 1.4464 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 2.2491 -1.6317 -1.1527 33 1 1.1602 1.1608 -5.5683 34 1 1.7158 1.6008 -3.9341 35 1 2.5760 3.1552 -5.7237 36 1 3.8773 2.3387 -4.8235 37 1 4.2983 2.2990 -7.2767 38 1 2.7580 1.4406 -7.5174 39 1 6.1367 -2.9991 -6.6786 40 1 2.5071 -0.9416 -6.6839 41 1 3.7847 -1.6254 -5.6482 42 1 2.5160 0.9440 2.4725 43 1 3.0527 -3.0242 3.6951 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119870762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:56 Heat of formation + Delta-G solvation = -29.936141 kcal Electronic energy + Delta-G solvation = -26991.787323 eV Core-core repulsion = 23163.643758 eV Total energy + Delta-G solvation = -3828.143565 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.06537 -40.73362 -39.88220 -38.55430 -37.15503 -35.21208 -33.50337 -32.79902 -31.56955 -30.03980 -27.73712 -26.89524 -26.51506 -24.89188 -23.53935 -22.91534 -21.99231 -21.12527 -20.40106 -19.37003 -18.80178 -18.27466 -17.83032 -16.97760 -16.88022 -16.66808 -16.47035 -15.86602 -15.70340 -15.49060 -15.25698 -14.92290 -14.83601 -14.61226 -14.46203 -14.41578 -14.06649 -13.77131 -13.47676 -13.18958 -12.95262 -12.88464 -12.65343 -12.50135 -12.29473 -12.26655 -12.15827 -11.71276 -11.63246 -11.17839 -10.98500 -10.77446 -10.58001 -10.54649 -10.33415 -10.03440 -9.94687 -9.55850 -8.12583 -6.28938 -0.36450 0.26920 0.31039 0.70820 1.26412 1.42188 1.42517 1.53149 1.81762 2.10331 2.40784 2.52542 3.15177 3.24254 3.29486 3.58927 4.02734 4.14146 4.16777 4.19465 4.32829 4.35311 4.47781 4.53419 4.61250 4.73895 4.79015 4.82140 4.91278 5.06086 5.10851 5.14966 5.19651 5.24093 5.27094 5.38025 5.50451 5.56720 5.82259 5.87710 5.94161 6.28411 6.41492 6.64505 6.66613 6.82078 6.94682 7.40952 8.91416 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.017217 B = 0.002817 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.909959 B = 9937.943403 C =11060.260049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.221 3.779 3 H 0.116 0.884 4 N -0.690 5.690 5 C 0.529 3.471 6 O -0.509 6.509 7 C 0.484 3.516 8 O -0.558 6.558 9 N -0.573 5.573 10 C 0.049 3.951 11 C -0.120 4.120 12 C -0.107 4.107 13 C 0.039 3.961 14 H -0.012 1.012 15 C -0.535 4.535 16 H 0.062 0.938 17 C 0.011 3.989 18 N -0.915 5.915 19 Si 0.959 3.041 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.263 1.263 23 C 0.121 3.879 24 C -0.248 4.248 25 C 0.047 3.953 26 N -0.499 5.499 27 C 0.028 3.972 28 S 0.144 5.856 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.411 0.589 33 H 0.072 0.928 34 H 0.158 0.842 35 H 0.099 0.901 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.261 0.739 40 H 0.045 0.955 41 H 0.084 0.916 42 H 0.194 0.806 43 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.189 3.328 18.073 22.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.116 3.884 3 H 0.134 0.866 4 N -0.343 5.343 5 C 0.310 3.690 6 O -0.387 6.387 7 C 0.267 3.733 8 O -0.438 6.438 9 N -0.304 5.304 10 C -0.071 4.071 11 C -0.158 4.158 12 C -0.145 4.145 13 C 0.020 3.980 14 H 0.006 0.994 15 C -0.574 4.574 16 H 0.081 0.919 17 C -0.188 4.188 18 N -0.553 5.553 19 Si 0.784 3.216 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.187 1.187 23 C 0.000 4.000 24 C -0.369 4.369 25 C -0.105 4.105 26 N -0.212 5.212 27 C -0.269 4.269 28 S 0.397 5.603 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.248 0.752 33 H 0.090 0.910 34 H 0.174 0.826 35 H 0.117 0.883 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.103 0.897 42 H 0.211 0.789 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -12.131 2.666 18.105 21.956 hybrid contribution 1.070 -0.395 -0.832 1.412 sum -11.061 2.270 17.274 20.637 Atomic orbital electron populations 1.22201 0.91587 1.03414 1.04114 1.19464 0.95558 0.96106 0.77278 0.86613 1.46068 1.64832 1.14842 1.08555 1.19911 0.77925 0.86617 0.84505 1.90284 1.50133 1.15410 1.82825 1.20433 0.80982 0.86516 0.85383 1.90739 1.48772 1.18463 1.85809 1.48463 1.53217 1.20128 1.08568 1.23338 0.95355 0.80739 1.07662 1.21823 0.98478 0.99042 0.96500 1.21567 0.99361 0.96605 0.96984 1.18908 0.92267 0.92195 0.94653 0.99350 1.21488 1.35573 1.05734 0.94572 0.91930 1.25876 0.96122 0.97441 0.99375 1.70043 1.42241 1.15768 1.27284 0.85540 0.78790 0.77247 0.79996 1.20211 1.21132 1.18747 1.21951 0.94567 0.99468 0.84052 1.26060 1.12185 0.96926 1.01777 1.22057 0.98341 1.02171 0.87941 1.66429 1.19100 1.02512 1.33164 1.29037 1.01556 0.97391 0.98929 1.84274 1.57994 1.03704 1.14322 0.88787 0.91474 0.91719 0.75163 0.90966 0.82615 0.88294 0.93556 0.92847 0.92398 0.92953 0.93695 0.89736 0.78914 0.75328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.47 71.98 0.68 -1.57 16 2 C 0.22 4.00 3.03 44.24 0.13 4.13 16 3 H 0.12 2.08 7.57 -2.39 -0.02 2.07 16 4 N -0.69 -16.90 5.06 -447.43 -2.26 -19.17 16 5 C 0.53 16.38 7.74 87.27 0.68 17.06 16 6 O -0.51 -15.38 12.77 -3.25 -0.04 -15.42 16 7 C 0.48 19.55 7.74 87.27 0.68 20.22 16 8 O -0.56 -26.07 15.95 -3.27 -0.05 -26.13 16 9 N -0.57 -23.78 2.97 -820.48 -2.44 -26.22 16 10 C 0.05 1.63 6.27 86.36 0.54 2.17 16 11 C -0.12 -4.00 6.08 30.67 0.19 -3.82 16 12 C -0.11 -4.32 5.11 30.62 0.16 -4.16 16 13 C 0.04 1.98 2.25 -11.46 -0.03 1.96 16 14 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 15 C -0.54 -29.38 8.57 25.60 0.22 -29.16 16 16 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 17 C 0.01 0.63 5.30 84.65 0.45 1.08 16 18 N -0.91 -54.46 11.38 21.45 0.24 -54.22 16 19 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 21 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 23 C 0.12 6.04 5.38 86.36 0.46 6.50 16 24 C -0.25 -4.21 5.51 24.64 0.14 -4.07 16 25 C 0.05 0.80 11.24 83.65 0.94 1.74 16 26 N -0.50 -9.32 10.54 -203.75 -2.15 -11.46 16 27 C 0.03 0.39 12.23 130.65 1.60 1.99 16 28 S 0.14 2.20 22.28 -56.49 -1.26 0.94 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.41 10.26 7.23 -92.71 -0.67 9.59 16 33 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.16 4.83 3.78 -78.73 -0.30 4.53 16 35 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 40 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.08 4.92 5.17 -2.39 -0.01 4.91 16 42 H 0.19 2.46 8.06 -2.91 -0.02 2.43 16 43 H 0.23 1.62 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -69.78 365.07 0.99 -68.80 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.09 Total: 23.00 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 6.83 Total: 14.07 kcal Atomic # 7 Polarization: -104.46 SS G_CDS: -6.61 Total: -111.06 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -0.09 Total: -41.55 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -1.26 Total: 0.94 kcal Total: -69.78 0.99 -68.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119870762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.859 kcal (2) G-P(sol) polarization free energy of solvation -69.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds