Wall clock time and date at job start Tue Mar 31 2020 20:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.87336 * 2 1 4 4 C 1.54325 * 109.88397 * 121.01882 * 2 1 3 5 5 H 1.08997 * 110.71816 * 215.76388 * 4 2 1 6 6 N 1.46893 * 110.71823 * 338.85920 * 4 2 1 7 7 C 1.46907 * 110.99822 * 198.07758 * 6 4 2 8 8 C 1.50701 * 109.47137 * 180.02562 * 7 6 4 9 9 O 1.21298 * 120.00059 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00203 * 180.02562 * 8 7 6 11 11 C 1.37095 * 120.00315 * 179.97438 * 10 8 7 12 12 H 1.08002 * 119.99549 * 0.02562 * 11 10 8 13 13 C 1.38950 * 119.99801 * 179.97438 * 11 10 8 14 14 N 1.31410 * 120.00113 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99480 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47123 * 270.00055 * 15 13 11 17 17 H 1.48498 * 109.47253 * 30.00342 * 15 13 11 18 18 H 1.48498 * 109.46680 * 150.00165 * 15 13 11 19 19 C 1.55158 * 102.94031 * 97.22494 * 4 2 1 20 20 C 1.54906 * 101.58381 * 35.49921 * 19 4 2 21 21 N 1.47026 * 109.87927 * 238.82910 * 2 1 3 22 22 C 1.34777 * 125.65320 * 59.48231 * 21 2 1 23 23 O 1.21637 * 119.99578 * 2.50096 * 22 21 2 24 24 C 1.47182 * 120.00044 * 182.49721 * 22 21 2 25 25 C 1.44428 * 123.46364 * 343.29602 * 24 22 21 26 26 C 1.32768 * 113.08246 * 180.02562 * 25 24 22 27 27 S 1.75502 * 110.57853 * 359.97438 * 26 25 24 28 28 C 1.36008 * 123.45750 * 162.99556 * 24 22 21 29 29 H 1.09001 * 109.46983 * 305.92230 * 1 2 3 30 30 H 1.08997 * 109.47367 * 65.92895 * 1 2 3 31 31 H 1.09002 * 109.46568 * 185.92748 * 1 2 3 32 32 H 1.00899 * 111.00468 * 322.03002 * 6 4 2 33 33 H 1.08999 * 109.47257 * 59.99963 * 7 6 4 34 34 H 1.08994 * 109.47151 * 299.99933 * 7 6 4 35 35 H 0.97002 * 119.99622 * 0.02562 * 10 8 7 36 36 H 0.97004 * 119.99574 * 180.02562 * 14 13 11 37 37 H 1.09007 * 111.00058 * 153.57795 * 19 4 2 38 38 H 1.09000 * 111.00420 * 277.42079 * 19 4 2 39 39 H 1.09003 * 110.36581 * 204.14904 * 20 19 4 40 40 H 1.09002 * 110.45704 * 81.87683 * 20 19 4 41 41 H 1.07999 * 123.45679 * 0.02562 * 25 24 22 42 42 H 1.08000 * 124.71173 * 180.02562 * 26 25 24 43 43 H 1.08005 * 124.59540 * 359.97438 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7479 1.2437 5 1 2.9640 -0.2791 1.6204 6 7 1.0266 -0.7996 2.2914 7 6 1.6218 -1.1092 3.5983 8 6 0.5389 -1.1544 4.6454 9 8 -0.6151 -0.9485 4.3337 10 7 0.8527 -1.4226 5.9284 11 6 -0.1323 -1.4632 6.8810 12 1 -1.1599 -1.2807 6.6033 13 6 0.1913 -1.7403 8.2036 14 7 1.4416 -1.9629 8.5414 15 14 -1.1511 -1.7963 9.5015 16 1 -1.3289 -0.4438 10.0883 17 1 -2.4247 -2.2367 8.8777 18 1 -0.7666 -2.7529 10.5702 19 6 2.3520 -2.1685 0.6952 20 6 2.8568 -1.8508 -0.7344 21 7 2.0300 -0.7156 -1.1830 22 6 1.7742 -0.3887 -2.4653 23 8 1.1122 0.5994 -2.7204 24 6 2.2958 -1.2271 -3.5567 25 6 3.3558 -2.1925 -3.3824 26 6 3.6645 -2.8345 -4.5028 27 16 2.6595 -2.2780 -5.8296 28 6 1.8250 -1.1765 -4.8317 29 1 -0.3633 0.6029 0.8322 30 1 -0.3634 0.4191 -0.9383 31 1 -0.3632 -1.0222 0.1061 32 1 0.5034 0.0623 2.3275 33 1 2.3476 -0.3388 3.8588 34 1 2.1207 -2.0771 3.5503 35 1 1.7758 -1.5862 6.1778 36 1 1.6674 -2.1567 9.4646 37 1 3.1272 -2.6601 1.2832 38 1 1.4453 -2.7728 0.6642 39 1 2.7088 -2.7100 -1.3887 40 1 3.9093 -1.5683 -0.7127 41 1 3.8468 -2.3736 -2.4377 42 1 4.4276 -3.5942 -4.5860 43 1 1.0315 -0.5251 -5.1670 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178088200.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:59 Heat of formation + Delta-G solvation = -13.960021 kcal Electronic energy + Delta-G solvation = -26242.900896 eV Core-core repulsion = 22415.450108 eV Total energy + Delta-G solvation = -3827.450788 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.70821 -38.65818 -37.88730 -37.02442 -34.79103 -33.80870 -31.45720 -31.21716 -30.71126 -30.05135 -26.77422 -25.88782 -24.89714 -23.77369 -23.30454 -20.92392 -19.94231 -19.30637 -19.21940 -18.24162 -17.91946 -16.59950 -16.32127 -16.18992 -15.82336 -15.39319 -15.05195 -14.59735 -14.46781 -14.02294 -13.75578 -13.68351 -13.47183 -13.28258 -13.21530 -12.96158 -12.81802 -12.44404 -12.26016 -12.17266 -11.94851 -11.60941 -11.53313 -11.47493 -11.09789 -11.05336 -10.90656 -10.66292 -10.40205 -10.22983 -10.03275 -9.52209 -9.43772 -8.91295 -8.75197 -8.48696 -8.13233 -7.97607 -6.43138 -3.83843 0.46428 1.15721 1.50299 1.66471 2.77747 3.09493 3.17104 3.25942 3.32018 3.89138 4.04481 4.17677 4.28092 4.39567 4.43591 4.62192 4.89745 4.94646 4.98708 5.06865 5.09155 5.21068 5.23418 5.29442 5.42446 5.47892 5.54009 5.59609 5.69680 5.76888 5.82318 5.83610 5.94346 6.06019 6.12127 6.25754 6.30057 6.50712 7.15678 7.31774 7.54123 7.58022 7.99063 8.04932 8.59696 9.16653 9.52746 10.04092 10.74546 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.033370 B = 0.001911 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.863951 B =14648.316433 C =15074.938795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.138 3.862 3 H 0.075 0.925 4 C 0.077 3.923 5 H 0.058 0.942 6 N -0.654 5.654 7 C 0.050 3.950 8 C 0.441 3.559 9 O -0.582 6.582 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.269 1.269 18 H -0.284 1.284 19 C -0.124 4.124 20 C 0.087 3.913 21 N -0.603 5.603 22 C 0.594 3.406 23 O -0.537 6.537 24 C -0.157 4.157 25 C -0.125 4.125 26 C -0.233 4.233 27 S 0.180 5.820 28 C -0.181 4.181 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.354 0.646 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.165 0.835 42 H 0.170 0.830 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.885 -2.426 -25.290 27.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.035 3.965 3 H 0.093 0.907 4 C -0.034 4.034 5 H 0.076 0.924 6 N -0.289 5.289 7 C -0.083 4.083 8 C 0.226 3.774 9 O -0.466 6.466 10 N -0.200 5.200 11 C -0.428 4.428 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.204 1.204 17 H -0.194 1.194 18 H -0.209 1.209 19 C -0.163 4.163 20 C -0.036 4.036 21 N -0.337 5.337 22 C 0.382 3.618 23 O -0.416 6.416 24 C -0.175 4.175 25 C -0.154 4.154 26 C -0.368 4.368 27 S 0.446 5.554 28 C -0.320 4.320 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.176 0.824 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.182 0.818 42 H 0.187 0.813 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 8.546 -2.804 -27.162 28.612 hybrid contribution 0.636 1.010 2.728 2.978 sum 9.182 -1.794 -24.434 26.164 Atomic orbital electron populations 1.21984 0.93391 1.03602 1.02325 1.21616 0.96067 0.95298 0.83530 0.90731 1.22558 0.94000 0.95711 0.91176 0.92378 1.60309 1.23421 1.42103 1.03075 1.21722 0.95975 1.01434 0.89153 1.19783 0.89634 0.84612 0.83380 1.90534 1.20629 1.54726 1.80745 1.41858 1.10592 1.61704 1.05865 1.19702 0.91029 1.45055 0.87053 0.87911 1.25264 0.97220 0.97212 0.98280 1.69611 1.17000 1.48236 1.19478 0.85855 0.80601 0.78043 0.79784 1.20431 1.19396 1.20931 1.22916 1.02663 0.97179 0.93530 1.22848 0.94670 0.89563 0.96513 1.48275 1.50392 1.30325 1.04672 1.17208 0.79690 0.84141 0.80724 1.90796 1.40247 1.27311 1.83231 1.20221 1.01233 1.01950 0.94059 1.21931 0.97601 0.95725 1.00161 1.25561 1.06971 1.07777 0.96507 1.83120 1.28556 1.31866 1.11900 1.25577 1.05167 1.04196 0.97014 0.91167 0.91796 0.91222 0.82378 0.93766 0.89539 0.77476 0.91881 0.89823 0.89053 0.89292 0.90989 0.81844 0.81298 0.80771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.30 37.16 0.31 -1.81 16 2 C 0.14 1.69 3.40 -66.95 -0.23 1.46 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 4 C 0.08 0.89 3.10 -65.88 -0.20 0.69 16 5 H 0.06 0.62 7.93 -51.93 -0.41 0.21 16 6 N -0.65 -9.91 5.13 -106.06 -0.54 -10.45 16 7 C 0.05 0.83 6.02 -4.97 -0.03 0.80 16 8 C 0.44 10.13 7.82 -10.98 -0.09 10.05 16 9 O -0.58 -15.54 15.78 5.54 0.09 -15.46 16 10 N -0.56 -14.03 5.29 -10.96 -0.06 -14.08 16 11 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 12 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -24.29 13.05 55.50 0.72 -23.56 16 15 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 19 C -0.12 -1.22 6.62 -24.58 -0.16 -1.38 16 20 C 0.09 0.72 5.09 -2.53 -0.01 0.71 16 21 N -0.60 -6.88 3.08 -164.35 -0.51 -7.38 16 22 C 0.59 7.73 7.53 -12.63 -0.10 7.63 16 23 O -0.54 -8.74 15.72 5.24 0.08 -8.66 16 24 C -0.16 -1.63 5.88 -104.63 -0.61 -2.24 16 25 C -0.13 -0.96 8.51 -39.02 -0.33 -1.29 16 26 C -0.23 -1.44 11.12 28.86 0.32 -1.12 16 27 S 0.18 1.15 23.02 -107.50 -2.48 -1.33 16 28 C -0.18 -1.65 10.55 29.93 0.32 -1.34 16 29 H 0.07 0.96 6.65 -51.93 -0.35 0.61 16 30 H 0.06 0.95 6.64 -51.93 -0.35 0.60 16 31 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 32 H 0.35 5.68 6.41 -39.29 -0.25 5.43 16 33 H 0.04 0.66 8.09 -51.93 -0.42 0.24 16 34 H 0.09 1.30 8.06 -51.93 -0.42 0.89 16 35 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 36 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.09 0.63 5.62 -51.93 -0.29 0.34 16 40 H 0.07 0.47 7.67 -51.93 -0.40 0.07 16 41 H 0.16 0.96 4.58 -52.49 -0.24 0.72 16 42 H 0.17 0.62 8.06 -52.49 -0.42 0.19 16 43 H 0.17 1.55 8.06 -52.48 -0.42 1.12 16 LS Contribution 364.72 15.07 5.50 5.50 Total: -1.00 -33.23 364.72 -8.77 -42.00 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -5.49 Total: 13.27 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -1.06 Total: 4.23 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.38 Total: -55.48 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: 0.17 Total: -24.12 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.48 Total: -1.33 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.23 -8.77 -42.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178088200.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.038 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds