Wall clock time and date at job start Tue Mar 31 2020 20:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.87336 * 2 1 4 4 C 1.54325 * 109.88397 * 121.01882 * 2 1 3 5 5 H 1.08997 * 110.71816 * 215.76388 * 4 2 1 6 6 N 1.46893 * 110.71823 * 338.85920 * 4 2 1 7 7 C 1.46907 * 110.99822 * 198.07758 * 6 4 2 8 8 C 1.50701 * 109.47137 * 180.02562 * 7 6 4 9 9 O 1.21298 * 120.00059 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00203 * 180.02562 * 8 7 6 11 11 C 1.37095 * 120.00315 * 179.97438 * 10 8 7 12 12 H 1.08002 * 119.99549 * 0.02562 * 11 10 8 13 13 C 1.38950 * 119.99801 * 179.97438 * 11 10 8 14 14 N 1.31410 * 120.00113 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99480 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47123 * 270.00055 * 15 13 11 17 17 H 1.48498 * 109.47253 * 30.00342 * 15 13 11 18 18 H 1.48498 * 109.46680 * 150.00165 * 15 13 11 19 19 C 1.55158 * 102.94031 * 97.22494 * 4 2 1 20 20 C 1.54906 * 101.58381 * 35.49921 * 19 4 2 21 21 N 1.47026 * 109.87927 * 238.82910 * 2 1 3 22 22 C 1.34777 * 125.65320 * 59.48231 * 21 2 1 23 23 O 1.21637 * 119.99578 * 2.50096 * 22 21 2 24 24 C 1.47182 * 120.00044 * 182.49721 * 22 21 2 25 25 C 1.44428 * 123.46364 * 343.29602 * 24 22 21 26 26 C 1.32768 * 113.08246 * 180.02562 * 25 24 22 27 27 S 1.75502 * 110.57853 * 359.97438 * 26 25 24 28 28 C 1.36008 * 123.45750 * 162.99556 * 24 22 21 29 29 H 1.09001 * 109.46983 * 305.92230 * 1 2 3 30 30 H 1.08997 * 109.47367 * 65.92895 * 1 2 3 31 31 H 1.09002 * 109.46568 * 185.92748 * 1 2 3 32 32 H 1.00899 * 111.00468 * 322.03002 * 6 4 2 33 33 H 1.08999 * 109.47257 * 59.99963 * 7 6 4 34 34 H 1.08994 * 109.47151 * 299.99933 * 7 6 4 35 35 H 0.97002 * 119.99622 * 0.02562 * 10 8 7 36 36 H 0.97004 * 119.99574 * 180.02562 * 14 13 11 37 37 H 1.09007 * 111.00058 * 153.57795 * 19 4 2 38 38 H 1.09000 * 111.00420 * 277.42079 * 19 4 2 39 39 H 1.09003 * 110.36581 * 204.14904 * 20 19 4 40 40 H 1.09002 * 110.45704 * 81.87683 * 20 19 4 41 41 H 1.07999 * 123.45679 * 0.02562 * 25 24 22 42 42 H 1.08000 * 124.71173 * 180.02562 * 26 25 24 43 43 H 1.08005 * 124.59540 * 359.97438 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7479 1.2437 5 1 2.9640 -0.2791 1.6204 6 7 1.0266 -0.7996 2.2914 7 6 1.6218 -1.1092 3.5983 8 6 0.5389 -1.1544 4.6454 9 8 -0.6151 -0.9485 4.3337 10 7 0.8527 -1.4226 5.9284 11 6 -0.1323 -1.4632 6.8810 12 1 -1.1599 -1.2807 6.6033 13 6 0.1913 -1.7403 8.2036 14 7 1.4416 -1.9629 8.5414 15 14 -1.1511 -1.7963 9.5015 16 1 -1.3289 -0.4438 10.0883 17 1 -2.4247 -2.2367 8.8777 18 1 -0.7666 -2.7529 10.5702 19 6 2.3520 -2.1685 0.6952 20 6 2.8568 -1.8508 -0.7344 21 7 2.0300 -0.7156 -1.1830 22 6 1.7742 -0.3887 -2.4653 23 8 1.1122 0.5994 -2.7204 24 6 2.2958 -1.2271 -3.5567 25 6 3.3558 -2.1925 -3.3824 26 6 3.6645 -2.8345 -4.5028 27 16 2.6595 -2.2780 -5.8296 28 6 1.8250 -1.1765 -4.8317 29 1 -0.3633 0.6029 0.8322 30 1 -0.3634 0.4191 -0.9383 31 1 -0.3632 -1.0222 0.1061 32 1 0.5034 0.0623 2.3275 33 1 2.3476 -0.3388 3.8588 34 1 2.1207 -2.0771 3.5503 35 1 1.7758 -1.5862 6.1778 36 1 1.6674 -2.1567 9.4646 37 1 3.1272 -2.6601 1.2832 38 1 1.4453 -2.7728 0.6642 39 1 2.7088 -2.7100 -1.3887 40 1 3.9093 -1.5683 -0.7127 41 1 3.8468 -2.3736 -2.4377 42 1 4.4276 -3.5942 -4.5860 43 1 1.0315 -0.5251 -5.1670 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178088200.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:58 Heat of formation + Delta-G solvation = -37.849895 kcal Electronic energy + Delta-G solvation = -26243.936839 eV Core-core repulsion = 22415.450108 eV Total energy + Delta-G solvation = -3828.486731 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.60961 -40.16734 -39.12446 -37.78515 -36.19972 -35.55168 -33.26539 -32.37273 -31.73904 -30.68074 -28.26553 -26.82244 -26.24027 -25.06168 -24.12627 -21.63409 -21.04942 -20.84240 -20.07119 -19.90009 -18.89451 -17.85114 -17.38193 -17.14649 -16.91304 -16.71139 -16.34752 -16.10582 -15.65556 -15.47689 -15.11398 -14.61117 -14.44412 -14.31888 -13.97603 -13.88326 -13.76115 -13.61777 -13.42809 -13.30706 -13.24597 -13.12584 -12.88907 -12.67986 -12.40914 -12.34871 -12.12329 -11.88611 -11.70295 -11.59498 -11.49368 -11.01699 -10.32392 -10.05373 -9.99782 -9.72601 -9.38313 -9.32312 -8.45772 -5.93865 -0.18980 0.60898 0.95039 1.03506 1.38312 1.42345 1.54675 1.90521 2.07771 2.24398 2.30405 2.92850 3.21897 3.31557 3.52941 3.63689 3.75502 3.91790 4.03128 4.24082 4.27161 4.31680 4.37057 4.44907 4.49944 4.53176 4.59653 4.62830 4.68522 4.68638 4.87628 5.01133 5.04172 5.11409 5.24196 5.27668 5.31002 5.40811 5.42389 5.90252 6.11698 6.32820 6.45121 6.62041 7.05620 7.14467 7.58578 8.14357 8.71476 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.033370 B = 0.001911 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.863951 B =14648.316433 C =15074.938795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.138 3.862 3 H 0.071 0.929 4 C 0.081 3.919 5 H 0.080 0.920 6 N -0.669 5.669 7 C 0.066 3.934 8 C 0.437 3.563 9 O -0.625 6.625 10 N -0.573 5.573 11 C -0.333 4.333 12 H 0.077 0.923 13 C -0.013 4.013 14 N -0.919 5.919 15 Si 0.991 3.009 16 H -0.272 1.272 17 H -0.275 1.275 18 H -0.270 1.270 19 C -0.120 4.120 20 C 0.088 3.912 21 N -0.603 5.603 22 C 0.586 3.414 23 O -0.586 6.586 24 C -0.180 4.180 25 C -0.135 4.135 26 C -0.225 4.225 27 S 0.228 5.772 28 C -0.204 4.204 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.345 0.655 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.397 0.603 36 H 0.277 0.723 37 H 0.109 0.891 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.183 0.817 42 H 0.202 0.798 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.539 -4.110 -25.836 29.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.034 3.966 3 H 0.089 0.911 4 C -0.029 4.029 5 H 0.098 0.902 6 N -0.303 5.303 7 C -0.066 4.066 8 C 0.225 3.775 9 O -0.511 6.511 10 N -0.210 5.210 11 C -0.462 4.462 12 H 0.095 0.905 13 C -0.212 4.212 14 N -0.560 5.560 15 Si 0.815 3.185 16 H -0.197 1.197 17 H -0.200 1.200 18 H -0.195 1.195 19 C -0.159 4.159 20 C -0.034 4.034 21 N -0.335 5.335 22 C 0.375 3.625 23 O -0.468 6.468 24 C -0.198 4.198 25 C -0.162 4.162 26 C -0.360 4.360 27 S 0.494 5.506 28 C -0.343 4.343 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.166 0.834 33 H 0.088 0.912 34 H 0.129 0.871 35 H 0.231 0.769 36 H 0.087 0.913 37 H 0.127 0.873 38 H 0.089 0.911 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.200 0.800 42 H 0.219 0.781 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 11.257 -4.525 -27.711 30.251 hybrid contribution -0.202 1.525 2.770 3.168 sum 11.055 -3.001 -24.941 27.446 Atomic orbital electron populations 1.21843 0.95080 1.02307 1.01071 1.21539 0.94696 0.95681 0.84660 0.91077 1.22626 0.93523 0.97221 0.89553 0.90178 1.60313 1.24847 1.41960 1.03176 1.21578 0.93745 1.03622 0.87635 1.20934 0.90590 0.82192 0.83801 1.90507 1.23139 1.55986 1.81490 1.41916 1.10301 1.62466 1.06354 1.19635 0.90773 1.47236 0.88580 0.90511 1.25998 0.99427 0.96295 0.99527 1.69663 1.18074 1.48012 1.20219 0.84960 0.77755 0.78429 0.77390 1.19741 1.19960 1.19495 1.22926 1.02671 0.95622 0.94659 1.23108 0.95530 0.89089 0.95651 1.48342 1.50283 1.30867 1.03983 1.17737 0.79115 0.83935 0.81674 1.90756 1.42551 1.29493 1.84027 1.20251 1.02999 1.03130 0.93467 1.22010 0.97190 0.95401 1.01636 1.25995 1.06819 1.07496 0.95725 1.82971 1.27089 1.29733 1.10835 1.25749 1.05643 1.05178 0.97743 0.91706 0.93549 0.92550 0.83370 0.91244 0.87112 0.76865 0.91321 0.87294 0.91062 0.87641 0.87978 0.80001 0.78126 0.81813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 8.30 71.98 0.60 -3.60 16 2 C 0.14 3.35 3.40 45.34 0.15 3.51 16 3 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 4 C 0.08 1.73 3.10 46.11 0.14 1.87 16 5 H 0.08 1.43 7.93 -2.39 -0.02 1.41 16 6 N -0.67 -19.71 5.13 -489.45 -2.51 -22.22 16 7 C 0.07 2.09 6.02 85.56 0.52 2.60 16 8 C 0.44 20.21 7.82 87.66 0.69 20.89 16 9 O -0.62 -34.29 15.78 -3.08 -0.05 -34.34 16 10 N -0.57 -28.75 5.29 -306.98 -1.62 -30.37 16 11 C -0.33 -18.74 9.68 84.04 0.81 -17.93 16 12 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 13 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 14 N -0.92 -48.87 13.05 21.66 0.28 -48.59 16 15 Si 0.99 42.81 29.55 68.60 2.03 44.83 16 16 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 18 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 19 C -0.12 -2.02 6.62 31.99 0.21 -1.81 16 20 C 0.09 1.20 5.09 86.85 0.44 1.64 16 21 N -0.60 -13.30 3.08 -792.13 -2.44 -15.74 16 22 C 0.59 15.51 7.53 86.59 0.65 16.17 16 23 O -0.59 -20.26 15.72 -4.15 -0.07 -20.33 16 24 C -0.18 -3.62 5.88 -19.87 -0.12 -3.74 16 25 C -0.13 -1.68 8.51 22.67 0.19 -1.48 16 26 C -0.23 -1.98 11.12 66.64 0.74 -1.24 16 27 S 0.23 2.40 23.02 -56.49 -1.30 1.10 16 28 C -0.20 -3.70 10.55 67.30 0.71 -2.99 16 29 H 0.06 1.90 6.65 -2.39 -0.02 1.88 16 30 H 0.05 1.49 6.64 -2.39 -0.02 1.47 16 31 H 0.06 1.75 8.09 -2.39 -0.02 1.73 16 32 H 0.35 11.21 6.41 -89.69 -0.57 10.64 16 33 H 0.07 1.88 8.09 -2.39 -0.02 1.86 16 34 H 0.11 3.00 8.06 -2.39 -0.02 2.98 16 35 H 0.40 18.73 7.90 -92.71 -0.73 18.00 16 36 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 37 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.11 1.15 5.62 -2.39 -0.01 1.14 16 40 H 0.10 0.86 7.67 -2.39 -0.02 0.85 16 41 H 0.18 1.42 4.58 -2.91 -0.01 1.40 16 42 H 0.20 0.45 8.06 -2.91 -0.02 0.43 16 43 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -75.46 364.72 0.29 -75.16 By element: Atomic # 1 Polarization: 37.05 SS G_CDS: -0.24 Total: 36.81 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 6.21 Total: 13.69 kcal Atomic # 7 Polarization: -110.63 SS G_CDS: -6.29 Total: -116.92 kcal Atomic # 8 Polarization: -54.56 SS G_CDS: -0.11 Total: -54.67 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -1.30 Total: 1.10 kcal Total: -75.46 0.29 -75.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178088200.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.311 kcal (2) G-P(sol) polarization free energy of solvation -75.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds