Wall clock time and date at job start Tue Mar 31 2020 20:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.87110 * 2 1 4 4 C 1.54326 * 109.88265 * 121.17401 * 2 1 3 5 5 H 1.08995 * 110.72051 * 259.97690 * 4 2 1 6 6 N 1.46496 * 110.71847 * 23.25226 * 4 2 1 7 7 C 1.36940 * 119.99850 * 205.00078 * 6 4 2 8 8 H 1.07997 * 120.00046 * 359.97438 * 7 6 4 9 9 C 1.38814 * 119.99961 * 179.97438 * 7 6 4 10 10 N 1.31613 * 120.00039 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00017 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46879 * 90.00200 * 11 9 7 13 13 H 1.48497 * 109.47413 * 210.00016 * 11 9 7 14 14 H 1.48507 * 109.47235 * 330.00460 * 11 9 7 15 15 C 1.55156 * 102.94124 * 141.61470 * 4 2 1 16 16 C 1.55136 * 101.48512 * 324.33216 * 15 4 2 17 17 N 1.47024 * 109.88705 * 238.98697 * 2 1 3 18 18 C 1.34772 * 125.64724 * 61.60039 * 17 2 1 19 19 O 1.21279 * 120.00292 * 0.02562 * 18 17 2 20 20 C 1.50701 * 119.99711 * 180.02562 * 18 17 2 21 21 N 1.46511 * 109.46927 * 180.02562 * 20 18 17 22 22 C 1.34771 * 119.99871 * 180.02562 * 21 20 18 23 23 O 1.21702 * 120.00117 * 359.97438 * 22 21 20 24 24 C 1.46575 * 120.00045 * 179.97438 * 22 21 20 25 25 C 1.36655 * 125.46205 * 179.97438 * 24 22 21 26 26 C 1.37467 * 113.29840 * 179.73918 * 25 24 22 27 27 C 1.33819 * 115.10375 * 359.97438 * 26 25 24 28 28 S 1.70616 * 110.95280 * 0.02562 * 27 26 25 29 29 H 1.09003 * 109.46854 * 179.55930 * 1 2 3 30 30 H 1.08994 * 109.47206 * 299.56019 * 1 2 3 31 31 H 1.08995 * 109.47011 * 59.56298 * 1 2 3 32 32 H 0.96995 * 120.00253 * 24.99470 * 6 4 2 33 33 H 0.96996 * 120.00452 * 179.97438 * 10 9 7 34 34 H 1.08995 * 111.00875 * 82.57291 * 15 4 2 35 35 H 1.08998 * 111.00579 * 206.38976 * 15 4 2 36 36 H 1.08998 * 110.49316 * 278.45389 * 16 15 4 37 37 H 1.08998 * 110.34358 * 156.06090 * 16 15 4 38 38 H 1.08997 * 109.47467 * 60.00159 * 20 18 17 39 39 H 1.08998 * 109.47259 * 299.99584 * 20 18 17 40 40 H 0.97001 * 119.99736 * 359.97438 * 21 20 18 41 41 H 1.07999 * 123.34463 * 359.77453 * 25 24 22 42 42 H 1.08000 * 122.44665 * 179.97438 * 26 25 24 43 43 H 1.07995 * 124.52302 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7512 1.2417 5 1 2.3528 -0.0488 2.0200 6 7 1.0472 -1.6880 1.7450 7 6 1.0606 -2.0660 3.0611 8 1 1.8143 -1.6739 3.7279 9 6 0.1056 -2.9532 3.5382 10 7 -0.8126 -3.4314 2.7255 11 14 0.1243 -3.4695 5.3333 12 1 -0.7102 -2.5317 6.1268 13 1 -0.4213 -4.8449 5.4586 14 1 1.5194 -3.4421 5.8418 15 6 3.2877 -1.5151 0.6903 16 6 2.8100 -1.8814 -0.7395 17 7 2.0301 -0.7123 -1.1849 18 6 1.8075 -0.3585 -2.4662 19 8 1.1436 0.6249 -2.7171 20 6 2.3835 -1.1849 -3.5870 21 7 2.0024 -0.5964 -4.8734 22 6 2.4071 -1.1706 -6.0235 23 8 3.0897 -2.1778 -5.9935 24 6 2.0254 -0.5821 -7.3105 25 6 2.3727 -1.0691 -8.5392 26 6 1.8739 -0.3233 -9.5806 27 6 1.1427 0.7378 -9.2198 28 16 1.0406 0.8593 -7.5210 29 1 -0.3633 -1.0277 -0.0079 30 1 -0.3633 0.5070 0.8938 31 1 -0.3633 0.5206 -0.8860 32 1 0.3705 -2.0403 1.1461 33 1 -1.4798 -4.0517 3.0587 34 1 4.1654 -0.8697 0.6592 35 1 3.4857 -2.4124 1.2766 36 1 2.1803 -2.7708 -0.7153 37 1 3.6656 -2.0391 -1.3961 38 1 1.9974 -2.2023 -3.5239 39 1 3.4701 -1.2029 -3.5039 40 1 1.4581 0.2062 -4.8973 41 1 2.9784 -1.9525 -8.6781 42 1 2.0586 -0.5753 -10.6144 43 1 0.6792 1.4255 -9.9115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180070423.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:25 Heat of formation + Delta-G solvation = -11.766935 kcal Electronic energy + Delta-G solvation = -26278.211121 eV Core-core repulsion = 22450.855432 eV Total energy + Delta-G solvation = -3827.355689 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.44376 -39.63868 -37.93387 -37.48521 -34.62321 -34.08055 -31.82126 -30.89401 -30.50827 -29.20146 -27.55246 -25.28489 -25.01017 -23.59734 -22.56774 -21.51135 -20.17339 -19.59983 -19.16309 -18.38833 -17.54242 -16.71482 -16.58537 -16.24222 -15.78703 -15.74069 -15.30486 -14.77733 -14.37860 -14.09464 -13.87920 -13.64485 -13.37052 -13.29149 -13.10915 -12.92364 -12.64009 -12.60216 -12.48069 -12.31299 -11.78570 -11.34641 -11.30377 -11.05789 -11.00171 -10.79620 -10.68671 -10.39205 -10.30213 -10.10749 -9.75638 -9.65553 -9.50209 -9.18633 -9.00605 -8.95324 -8.46676 -7.08144 -5.86110 -3.16041 0.16419 1.12167 1.53483 2.05724 2.57951 2.62738 2.94643 3.28098 3.38303 3.43921 3.45532 4.39513 4.50880 4.53613 4.65168 4.93992 4.98632 5.11482 5.13510 5.21164 5.24552 5.41313 5.51681 5.57527 5.59044 5.69677 5.75839 5.80600 5.92778 5.95049 5.97561 6.04738 6.27912 6.36216 6.45547 6.55684 6.64953 6.78645 6.95799 7.18276 7.62438 7.64352 7.87529 8.14494 8.31972 9.43767 9.98083 10.32914 11.35985 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.026546 B = 0.002125 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.514407 B =13176.173287 C =13333.782883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.126 3.874 3 H 0.072 0.928 4 C 0.172 3.828 5 H 0.072 0.928 6 N -0.713 5.713 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.282 1.282 15 C -0.159 4.159 16 C 0.099 3.901 17 N -0.600 5.600 18 C 0.522 3.478 19 O -0.546 6.546 20 C 0.105 3.895 21 N -0.713 5.713 22 C 0.593 3.407 23 O -0.530 6.530 24 C -0.267 4.267 25 C -0.055 4.055 26 C -0.151 4.151 27 C -0.232 4.232 28 S 0.213 5.787 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.388 0.612 33 H 0.256 0.744 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.410 0.590 41 H 0.155 0.845 42 H 0.146 0.854 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.660 8.352 -21.564 24.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 H 0.090 0.910 4 C 0.059 3.941 5 H 0.090 0.910 6 N -0.355 5.355 7 C -0.376 4.376 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.200 4.200 16 C -0.023 4.023 17 N -0.334 5.334 18 C 0.309 3.691 19 O -0.425 6.425 20 C -0.022 4.022 21 N -0.368 5.368 22 C 0.379 3.621 23 O -0.408 6.408 24 C -0.388 4.388 25 C -0.088 4.088 26 C -0.183 4.183 27 C -0.370 4.370 28 S 0.480 5.520 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.225 0.775 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.248 0.752 41 H 0.172 0.828 42 H 0.164 0.836 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 6.056 9.160 -20.521 23.275 hybrid contribution 0.167 -1.172 -0.339 1.232 sum 6.223 7.988 -20.861 23.189 Atomic orbital electron populations 1.21925 0.94073 1.03052 1.01709 1.22083 0.95568 0.95666 0.84401 0.90956 1.21195 0.89128 0.91680 0.92049 0.91049 1.42553 1.32660 1.51319 1.08988 1.19230 1.10875 1.21349 0.86153 0.90992 1.24753 0.97883 1.00015 0.97941 1.69651 1.18387 1.35469 1.34239 0.86190 0.77467 0.77685 0.84787 1.21697 1.21805 1.20716 1.23565 0.99276 1.02510 0.94695 1.22476 0.94654 0.88530 0.96684 1.48578 1.51633 1.28491 1.04656 1.19933 0.80894 0.85355 0.82899 1.90662 1.40715 1.27986 1.83120 1.21098 1.01617 0.97850 0.81668 1.45564 1.55216 1.31447 1.04550 1.16873 0.79625 0.83416 0.82159 1.90846 1.38442 1.24425 1.87093 1.24585 1.12176 1.04453 0.97573 1.20816 0.98255 1.00108 0.89654 1.20057 1.01126 0.96096 1.00989 1.25398 1.06478 1.04124 1.00975 1.83314 1.46222 1.22690 0.99782 0.91491 0.91362 0.92750 0.77534 0.93374 0.91893 0.89242 0.90524 0.91344 0.87950 0.88163 0.75238 0.82777 0.83645 0.81306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.51 37.16 0.32 -2.39 16 2 C 0.13 2.09 3.42 -66.95 -0.23 1.86 16 3 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 4 C 0.17 3.08 3.48 -66.10 -0.23 2.85 16 5 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 6 N -0.71 -16.22 4.54 -51.65 -0.23 -16.45 16 7 C -0.25 -6.30 9.96 -15.06 -0.15 -6.45 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 10 N -0.93 -26.84 13.06 55.49 0.72 -26.12 16 11 Si 0.91 21.49 29.55 -169.99 -5.02 16.46 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 C -0.16 -2.41 6.78 -24.46 -0.17 -2.57 16 16 C 0.10 1.38 6.68 -2.41 -0.02 1.36 16 17 N -0.60 -9.04 3.06 -162.88 -0.50 -9.54 16 18 C 0.52 7.73 7.71 -10.99 -0.08 7.64 16 19 O -0.55 -9.29 14.70 5.56 0.08 -9.21 16 20 C 0.10 1.31 5.16 -5.19 -0.03 1.28 16 21 N -0.71 -8.84 5.52 -62.83 -0.35 -9.19 16 22 C 0.59 7.72 7.78 -12.90 -0.10 7.61 16 23 O -0.53 -8.31 16.84 5.19 0.09 -8.22 16 24 C -0.27 -2.86 6.45 -36.79 -0.24 -3.09 16 25 C -0.05 -0.51 10.01 -40.43 -0.40 -0.91 16 26 C -0.15 -1.09 10.15 -41.41 -0.42 -1.51 16 27 C -0.23 -1.56 10.92 29.18 0.32 -1.25 16 28 S 0.21 1.74 22.16 -107.50 -2.38 -0.64 16 29 H 0.07 1.36 6.20 -51.93 -0.32 1.04 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.05 0.97 6.88 -51.93 -0.36 0.62 16 32 H 0.39 9.54 5.67 -40.82 -0.23 9.31 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.07 0.76 7.48 -51.93 -0.39 0.38 16 38 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.10 1.13 7.85 -51.93 -0.41 0.72 16 40 H 0.41 4.91 6.55 -40.82 -0.27 4.64 16 41 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 42 H 0.15 0.71 8.06 -52.49 -0.42 0.28 16 43 H 0.17 0.71 8.06 -52.49 -0.42 0.28 16 LS Contribution 371.17 15.07 5.59 5.59 Total: -1.00 -31.22 371.17 -9.27 -40.49 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -5.75 Total: 12.75 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -1.53 Total: 4.08 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: -0.36 Total: -61.30 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.17 Total: -17.44 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.38 Total: -0.64 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.22 -9.27 -40.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180070423.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.722 kcal (2) G-P(sol) polarization free energy of solvation -31.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds